RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 NISCHQ9Y2I1 1504 aa23.11■■□□□ 1.29
CDH3-203ENST00000542274 CCDC180Q9P1Z9 1646 aa20.04■□□□□ 0.8
CDH3-203ENST00000542274 PELP1Q8IZL8 1130 aaKnown RBP19.93■□□□□ 0.78
CDH3-203ENST00000542274 MYT1Q01538 1121 aa19.67■□□□□ 0.74
CDH3-203ENST00000542274 ZCCHC6Q5VYS8 1495 aaKnown RBP19.41■□□□□ 0.7
CDH3-203ENST00000542274 DCAF8L2P0C7V8 631 aa19.31■□□□□ 0.68
CDH3-203ENST00000542274 SHROOM4Q9ULL8 1493 aa19.22■□□□□ 0.67
CDH3-203ENST00000542274 ABCC9O60706 1549 aa19.14■□□□□ 0.65
CDH3-203ENST00000542274 TTBK1Q5TCY1 1321 aaPredicted RBP18.99■□□□□ 0.63
CDH3-203ENST00000542274 DCAF1Q9Y4B6 1507 aa18.96■□□□□ 0.63
CDH3-203ENST00000542274 PRKCSHP14314 528 aaPredicted RBP18.89■□□□□ 0.62
CDH3-203ENST00000542274 MYO15BQ96JP2 1530 aa18.67■□□□□ 0.58
CDH3-203ENST00000542274 SUPT5HO00267 1087 aaKnown RBP18.66■□□□□ 0.58
CDH3-203ENST00000542274 NACADO15069 1562 aa18.65■□□□□ 0.58
CDH3-203ENST00000542274 SCRIBQ14160 1630 aa18.65■□□□□ 0.58
CDH3-203ENST00000542274 SLC24A1O60721 1099 aa18.56■□□□□ 0.56
CDH3-203ENST00000542274 RB1CC1Q8TDY2 1594 aa18.53■□□□□ 0.56
CDH3-203ENST00000542274 APLP2Q06481 763 aa18.36■□□□□ 0.53
CDH3-203ENST00000542274 ERICH6Q7L0X2 663 aa18.33■□□□□ 0.53
CDH3-203ENST00000542274 UNC13AQ9UPW8 1703 aa18.29■□□□□ 0.52
CDH3-203ENST00000542274 BCL11AQ9H165 835 aa18.21■□□□□ 0.5
CDH3-203ENST00000542274 PABPN1Q86U42 306 aaKnown RBP eCLIP18.11■□□□□ 0.49
CDH3-203ENST00000542274 HRCP23327 699 aa18.09■□□□□ 0.49
CDH3-203ENST00000542274 CECR2Q9BXF3 1484 aa18.07■□□□□ 0.48
CDH3-203ENST00000542274 SCAF1Q9H7N4 1312 aaKnown RBP18.05■□□□□ 0.48
CDH3-203ENST00000542274 BICRAQ9NZM4 1560 aa18.04■□□□□ 0.48
CDH3-203ENST00000542274 FAM9AQ8IZU1 332 aaPredicted RBP17.99■□□□□ 0.47
CDH3-203ENST00000542274 RSF1Q96T23 1441 aaPredicted RBP17.98■□□□□ 0.47
CDH3-203ENST00000542274 MROH2BQ7Z745 1585 aa17.94■□□□□ 0.46
CDH3-203ENST00000542274 CHIC1Q5VXU3 224 aa17.92■□□□□ 0.46
CDH3-203ENST00000542274 WIZO95785 1651 aa17.83■□□□□ 0.44
CDH3-203ENST00000542274 BAZ1AQ9NRL2 1556 aaPredicted RBP17.81■□□□□ 0.44
CDH3-203ENST00000542274 SMARCA4P51532 1647 aa17.78■□□□□ 0.44
CDH3-203ENST00000542274 DAXXQ9UER7 740 aaPredicted RBP17.66■□□□□ 0.42
CDH3-203ENST00000542274 PPARGC1BQ86YN6 1023 aaKnown RBP17.66■□□□□ 0.42
CDH3-203ENST00000542274 TOP2AP11388 1531 aaKnown RBP17.53■□□□□ 0.4
CDH3-203ENST00000542274 EIF4G1Q04637 1599 aaKnown RBP17.48■□□□□ 0.39
CDH3-203ENST00000542274 LOC105371045A0A1W2PR82 267 aa17.47■□□□□ 0.39
CDH3-203ENST00000542274 ATAD2BQ9ULI0 1458 aa17.46■□□□□ 0.39
CDH3-203ENST00000542274 PEG3Q9GZU2 1588 aa17.45■□□□□ 0.38
CDH3-203ENST00000542274 SMARCA2P51531 1590 aa17.42■□□□□ 0.38
CDH3-203ENST00000542274 CENPBP07199 599 aaPredicted RBP17.41■□□□□ 0.38
CDH3-203ENST00000542274 CCDC88BA6NC98 1476 aa17.41■□□□□ 0.38
CDH3-203ENST00000542274 BAZ1BQ9UIG0 1483 aaKnown RBP17.38■□□□□ 0.37
CDH3-203ENST00000542274 EIF5BO60841 1220 aaKnown RBP17.36■□□□□ 0.37
CDH3-203ENST00000542274 TRIM41Q8WV44 630 aa17.33■□□□□ 0.36
CDH3-203ENST00000542274 CC2D2AQ9P2K1 1620 aa17.25■□□□□ 0.35
CDH3-203ENST00000542274 EHMT2Q96KQ7 1210 aa17.24■□□□□ 0.35
CDH3-203ENST00000542274 NCAPD3P42695 1498 aa17.23■□□□□ 0.35
CDH3-203ENST00000542274 HMGXB3Q12766 1538 aa17.21■□□□□ 0.35
CDH3-203ENST00000542274 ABCC8Q09428 1581 aa17.16■□□□□ 0.34
CDH3-203ENST00000542274 PLEKHG5O94827 1062 aa17.11■□□□□ 0.33
CDH3-203ENST00000542274 PCGF6Q9BYE7 350 aa17.08■□□□□ 0.32
CDH3-203ENST00000542274 ACIN1Q9UKV3 1341 aaKnown RBP17.08■□□□□ 0.32
CDH3-203ENST00000542274 ANP32EQ9BTT0 268 aa17.05■□□□□ 0.32
CDH3-203ENST00000542274 GTF3C3Q9Y5Q9 886 aa17.04■□□□□ 0.32
CDH3-203ENST00000542274 DNAJC5BQ9UF47 199 aa16.98■□□□□ 0.31
CDH3-203ENST00000542274 NEUROD1Q13562 356 aa16.96■□□□□ 0.3
CDH3-203ENST00000542274 CSRNP3Q8WYN3 585 aa16.94■□□□□ 0.3
CDH3-203ENST00000542274 WRNQ14191 1432 aaPredicted RBP eCLIP16.93■□□□□ 0.3
CDH3-203ENST00000542274 SYNJ1O43426 1573 aa16.91■□□□□ 0.3
CDH3-203ENST00000542274 CFTRP13569 1480 aa16.9■□□□□ 0.3
CDH3-203ENST00000542274 ANO8Q9HCE9 1232 aaPredicted RBP16.89■□□□□ 0.29
CDH3-203ENST00000542274 UBE2Q2Q8WVN8 375 aa16.87■□□□□ 0.29
CDH3-203ENST00000542274 CADPSQ9ULU8 1353 aa16.84■□□□□ 0.29
CDH3-203ENST00000542274 NESP48681 1621 aa16.83■□□□□ 0.29
CDH3-203ENST00000542274 PRDM2Q13029 1718 aa16.83■□□□□ 0.28
CDH3-203ENST00000542274 SOGA1O94964 1423 aa16.82■□□□□ 0.28
CDH3-203ENST00000542274 RUSC2Q8N2Y8 1516 aa16.79■□□□□ 0.28
CDH3-203ENST00000542274 TOP2BQ02880 1626 aa16.75■□□□□ 0.27
CDH3-203ENST00000542274 CUX1P39880 1505 aa16.75■□□□□ 0.27
CDH3-203ENST00000542274 PODXL2Q9NZ53 605 aa16.74■□□□□ 0.27
CDH3-203ENST00000542274 BIVM-ERCC5R4GMW8 1640 aa16.73■□□□□ 0.27
CDH3-203ENST00000542274 TRIM26Q12899 539 aaPredicted RBP16.71■□□□□ 0.27
CDH3-203ENST00000542274 FANCD2Q9BXW9 1451 aa16.7■□□□□ 0.26
CDH3-203ENST00000542274 LAMC3Q9Y6N6 1575 aa16.65■□□□□ 0.26
CDH3-203ENST00000542274 KIF21AQ7Z4S6 1674 aa16.59■□□□□ 0.25
CDH3-203ENST00000542274 EEA1Q15075 1411 aa16.58■□□□□ 0.25
CDH3-203ENST00000542274 CEP164Q9UPV0 1460 aa16.57■□□□□ 0.24
CDH3-203ENST00000542274 UBTFP17480 764 aaKnown RBP16.57■□□□□ 0.24
CDH3-203ENST00000542274 PKNOX2Q96KN3 472 aa16.56■□□□□ 0.24
CDH3-203ENST00000542274 FGD5Q6ZNL6 1462 aa16.56■□□□□ 0.24
CDH3-203ENST00000542274 PDS5BQ9NTI5 1447 aa16.53■□□□□ 0.24
CDH3-203ENST00000542274 TOPBP1Q92547 1522 aa16.52■□□□□ 0.24
CDH3-203ENST00000542274 CEP162Q5TB80 1403 aa16.52■□□□□ 0.24
CDH3-203ENST00000542274 DNMBPQ6XZF7 1577 aa16.52■□□□□ 0.24
CDH3-203ENST00000542274 ZEB1P37275 1124 aaPredicted RBP16.52■□□□□ 0.24
CDH3-203ENST00000542274 URB2Q14146 1524 aaKnown RBP16.51■□□□□ 0.23
CDH3-203ENST00000542274 RAD54L2Q9Y4B4 1467 aa16.48■□□□□ 0.23
CDH3-203ENST00000542274 CUX2O14529 1486 aa16.48■□□□□ 0.23
CDH3-203ENST00000542274 GOLGA3Q08378 1498 aa16.47■□□□□ 0.23
CDH3-203ENST00000542274 TNIKQ9UKE5 1360 aa16.47■□□□□ 0.23
CDH3-203ENST00000542274 POLA1P09884 1462 aaPredicted RBP16.46■□□□□ 0.23
CDH3-203ENST00000542274 RANGAP1P46060 587 aaPredicted RBP16.46■□□□□ 0.23
CDH3-203ENST00000542274 KIF27Q86VH2 1401 aa16.46■□□□□ 0.23
CDH3-203ENST00000542274 RAPGEF2Q9Y4G8 1499 aa16.45■□□□□ 0.22
CDH3-203ENST00000542274 KIF21BO75037 1637 aa16.45■□□□□ 0.22
CDH3-203ENST00000542274 SALL2Q9Y467 1007 aaPredicted RBP16.45■□□□□ 0.22
CDH3-203ENST00000542274 CCDC136Q96JN2 1154 aa16.44■□□□□ 0.22
CDH3-203ENST00000542274 PRXQ9BXM0 1461 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms