RNA–Protein interactions for RNA: ENST00000539815.5

GNE-205, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GNE, Length 3,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-205ENST00000539815 NISCHQ9Y2I1 1504 aa17.1■□□□□ 0.33
GNE-205ENST00000539815 ABCC9O60706 1549 aa16.12■□□□□ 0.17
GNE-205ENST00000539815 DCAF8L2P0C7V8 631 aa16.03■□□□□ 0.16
GNE-205ENST00000539815 PABPN1Q86U42 306 aaKnown RBP eCLIP15.27■□□□□ 0.03
GNE-205ENST00000539815 CCDC180Q9P1Z9 1646 aa15.11■□□□□ 0.01
GNE-205ENST00000539815 DNAJC5BQ9UF47 199 aa15.05■□□□□ -0
GNE-205ENST00000539815 RB1CC1Q8TDY2 1594 aa14.96□□□□□ -0.01
GNE-205ENST00000539815 NACADO15069 1562 aa14.69□□□□□ -0.06
GNE-205ENST00000539815 CECR2Q9BXF3 1484 aa14.49□□□□□ -0.09
GNE-205ENST00000539815 DNAJC5Q9H3Z4 198 aa14.32□□□□□ -0.12
GNE-205ENST00000539815 SCRIBQ14160 1630 aa14.3□□□□□ -0.12
GNE-205ENST00000539815 ERCC6Q03468 1493 aa14.26□□□□□ -0.13
GNE-205ENST00000539815 TRIM41Q8WV44 630 aa14.24□□□□□ -0.13
GNE-205ENST00000539815 MYO15BQ96JP2 1530 aa14.11□□□□□ -0.15
GNE-205ENST00000539815 CC2D2AQ9P2K1 1620 aa14.1□□□□□ -0.15
GNE-205ENST00000539815 SHROOM4Q9ULL8 1493 aa14.06□□□□□ -0.16
GNE-205ENST00000539815 EIF4G1Q04637 1599 aaKnown RBP14.02□□□□□ -0.16
GNE-205ENST00000539815 ZCCHC6Q5VYS8 1495 aaKnown RBP13.99□□□□□ -0.17
GNE-205ENST00000539815 BICRAQ9NZM4 1560 aa13.97□□□□□ -0.17
GNE-205ENST00000539815 DCAF1Q9Y4B6 1507 aa13.86□□□□□ -0.19
GNE-205ENST00000539815 TRHP20396 242 aaPredicted RBP13.83□□□□□ -0.2
GNE-205ENST00000539815 AEBP2Q6ZN18 517 aaPredicted RBP13.8□□□□□ -0.2
GNE-205ENST00000539815 UNC13AQ9UPW8 1703 aa13.79□□□□□ -0.2
GNE-205ENST00000539815 CUX2O14529 1486 aa13.76□□□□□ -0.21
GNE-205ENST00000539815 FBLN2P98095 1184 aa13.75□□□□□ -0.21
GNE-205ENST00000539815 OSCARQ8IYS5 282 aa13.73□□□□□ -0.21
GNE-205ENST00000539815 PDS5BQ9NTI5 1447 aa13.72□□□□□ -0.21
GNE-205ENST00000539815 BAZ1BQ9UIG0 1483 aaKnown RBP13.69□□□□□ -0.22
GNE-205ENST00000539815 SMARCA2P51531 1590 aa13.6□□□□□ -0.23
GNE-205ENST00000539815 NCAPD3P42695 1498 aa13.59□□□□□ -0.23
GNE-205ENST00000539815 ATAD2BQ9ULI0 1458 aa13.56□□□□□ -0.24
GNE-205ENST00000539815 CYB5RLQ6IPT4 315 aa13.54□□□□□ -0.24
GNE-205ENST00000539815 NESP48681 1621 aa13.5□□□□□ -0.25
GNE-205ENST00000539815 CADPSQ9ULU8 1353 aa13.46□□□□□ -0.26
GNE-205ENST00000539815 BAZ1AQ9NRL2 1556 aaPredicted RBP13.43□□□□□ -0.26
GNE-205ENST00000539815 CHMP7Q8WUX9 453 aaPredicted RBP13.39□□□□□ -0.27
GNE-205ENST00000539815 CEP164Q9UPV0 1460 aa13.36□□□□□ -0.27
GNE-205ENST00000539815 NPM1P06748 294 aaKnown RBP eCLIP13.33□□□□□ -0.28
GNE-205ENST00000539815 MRC2Q9UBG0 1479 aa13.33□□□□□ -0.28
GNE-205ENST00000539815 HMGXB3Q12766 1538 aa13.31□□□□□ -0.28
GNE-205ENST00000539815 LAMC3Q9Y6N6 1575 aa13.28□□□□□ -0.28
GNE-205ENST00000539815 SMARCA4P51532 1647 aa13.28□□□□□ -0.28
GNE-205ENST00000539815 FAM9AQ8IZU1 332 aaPredicted RBP13.26□□□□□ -0.29
GNE-205ENST00000539815 FANCD2Q9BXW9 1451 aa13.25□□□□□ -0.29
GNE-205ENST00000539815 SUPT5HO00267 1087 aaKnown RBP13.24□□□□□ -0.29
GNE-205ENST00000539815 TTBK1Q5TCY1 1321 aaPredicted RBP13.21□□□□□ -0.29
GNE-205ENST00000539815 MROH2BQ7Z745 1585 aa13.15□□□□□ -0.3
GNE-205ENST00000539815 TDRD9Q8NDG6 1382 aaKnown RBP13.03□□□□□ -0.32
GNE-205ENST00000539815 IFT140Q96RY7 1462 aa13.02□□□□□ -0.32
GNE-205ENST00000539815 ABCC8Q09428 1581 aa13.01□□□□□ -0.33
GNE-205ENST00000539815 CHIC1Q5VXU3 224 aa13□□□□□ -0.33
GNE-205ENST00000539815 THOC2Q8NI27 1593 aaKnown RBP12.97□□□□□ -0.33
GNE-205ENST00000539815 SOGA1O94964 1423 aa12.97□□□□□ -0.33
GNE-205ENST00000539815 CFTRP13569 1480 aa12.96□□□□□ -0.33
GNE-205ENST00000539815 KIF21AQ7Z4S6 1674 aa12.96□□□□□ -0.34
GNE-205ENST00000539815 RSF1Q96T23 1441 aaPredicted RBP12.94□□□□□ -0.34
GNE-205ENST00000539815 AQRO60306 1485 aaKnown RBP eCLIP12.94□□□□□ -0.348e-8■■■■■ 39.5
GNE-205ENST00000539815 WDR62O43379 1518 aa12.94□□□□□ -0.34
GNE-205ENST00000539815 FAM69CQ0P6D2 419 aa12.9□□□□□ -0.34
GNE-205ENST00000539815 WIZO95785 1651 aa12.89□□□□□ -0.35
GNE-205ENST00000539815 ARHGEF11O15085 1522 aa12.88□□□□□ -0.35
GNE-205ENST00000539815 PEG3Q9GZU2 1588 aa12.87□□□□□ -0.35
GNE-205ENST00000539815 ZNF608Q9ULD9 1512 aaPredicted RBP12.86□□□□□ -0.35
GNE-205ENST00000539815 URB2Q14146 1524 aaKnown RBP12.85□□□□□ -0.35
GNE-205ENST00000539815 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.84□□□□□ -0.35
GNE-205ENST00000539815 HNRNPUL2Q1KMD3 747 aaKnown RBP12.84□□□□□ -0.35
GNE-205ENST00000539815 TOP2AP11388 1531 aaKnown RBP12.82□□□□□ -0.36
GNE-205ENST00000539815 TOPBP1Q92547 1522 aa12.82□□□□□ -0.36
GNE-205ENST00000539815 CCDC88BA6NC98 1476 aa12.8□□□□□ -0.36
GNE-205ENST00000539815 MYT1LQ9UL68 1186 aa12.77□□□□□ -0.36
GNE-205ENST00000539815 PLPPR3Q6T4P5 718 aa12.76□□□□□ -0.37
GNE-205ENST00000539815 JPH4Q96JJ6 628 aa12.76□□□□□ -0.37
GNE-205ENST00000539815 RAD54L2Q9Y4B4 1467 aa12.75□□□□□ -0.37
GNE-205ENST00000539815 GRIN2BQ13224 1484 aa12.75□□□□□ -0.37
GNE-205ENST00000539815 RIMBP3CA6NJZ7 1639 aa12.74□□□□□ -0.37
GNE-205ENST00000539815 RIMBP3BA6NNM3 1639 aa12.74□□□□□ -0.37
GNE-205ENST00000539815 RIMBP3Q9UFD9 1639 aa12.74□□□□□ -0.37
GNE-205ENST00000539815 SNAPC4Q5SXM2 1469 aa12.73□□□□□ -0.37
GNE-205ENST00000539815 GAPVD1Q14C86 1478 aa12.72□□□□□ -0.37
GNE-205ENST00000539815 SYNJ1O43426 1573 aa12.71□□□□□ -0.37
GNE-205ENST00000539815 ARID4BQ4LE39 1312 aaPredicted RBP12.7□□□□□ -0.38
GNE-205ENST00000539815 WRNQ14191 1432 aaPredicted RBP eCLIP12.69□□□□□ -0.38
GNE-205ENST00000539815 POLA1P09884 1462 aaPredicted RBP12.67□□□□□ -0.38
GNE-205ENST00000539815 ARAP1Q96P48 1450 aa12.67□□□□□ -0.38
GNE-205ENST00000539815 DNMBPQ6XZF7 1577 aa12.67□□□□□ -0.38
GNE-205ENST00000539815 RANGAP1P46060 587 aaPredicted RBP12.66□□□□□ -0.38
GNE-205ENST00000539815 FGD5Q6ZNL6 1462 aa12.66□□□□□ -0.38
GNE-205ENST00000539815 KCNH8Q96L42 1107 aa12.65□□□□□ -0.38
GNE-205ENST00000539815 MAGI1Q96QZ7 1491 aaPredicted RBP12.64□□□□□ -0.39
GNE-205ENST00000539815 ATP1B4Q9UN42 357 aaPredicted RBP12.64□□□□□ -0.39
GNE-205ENST00000539815 SYNJ2O15056 1496 aa12.63□□□□□ -0.39
GNE-205ENST00000539815 EIF4G3O43432 1585 aaKnown RBP12.59□□□□□ -0.39
GNE-205ENST00000539815 ESF1Q9H501 851 aaKnown RBP12.59□□□□□ -0.39
GNE-205ENST00000539815 ARID3CA6NKF2 412 aa12.57□□□□□ -0.4
GNE-205ENST00000539815 CARMIL2Q6F5E8 1435 aa12.57□□□□□ -0.4
GNE-205ENST00000539815 PRG4Q92954 1404 aaPredicted RBP12.57□□□□□ -0.4
GNE-205ENST00000539815 PTPRGP23470 1445 aa12.54□□□□□ -0.4
GNE-205ENST00000539815 ILDR1Q86SU0 546 aaPredicted RBP12.51□□□□□ -0.41
GNE-205ENST00000539815 FHAD1B1AJZ9 1412 aa12.51□□□□□ -0.41
GNE-205ENST00000539815 EHMT2Q96KQ7 1210 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms