RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 NISCHQ9Y2I1 1504 aa41.77■■■■■ 4.28
TMEM260-203ENST00000539559 CCDC180Q9P1Z9 1646 aa36.1■■■■□ 3.37
TMEM260-203ENST00000539559 SHROOM4Q9ULL8 1493 aa35.44■■■■□ 3.26
TMEM260-203ENST00000539559 ZCCHC6Q5VYS8 1495 aaKnown RBP35.16■■■■□ 3.22
TMEM260-203ENST00000539559 SUPT5HO00267 1087 aaKnown RBP34.96■■■■□ 3.19
TMEM260-203ENST00000539559 DCAF8L2P0C7V8 631 aa34.57■■■■□ 3.12
TMEM260-203ENST00000539559 DCAF1Q9Y4B6 1507 aa34.47■■■■□ 3.11
TMEM260-203ENST00000539559 MYO15BQ96JP2 1530 aa34.11■■■■□ 3.05
TMEM260-203ENST00000539559 CHIC1Q5VXU3 224 aa34.01■■■■□ 3.04
TMEM260-203ENST00000539559 ABCC9O60706 1549 aa33.88■■■■□ 3.01
TMEM260-203ENST00000539559 HRCP23327 699 aa33.84■■■■□ 3.01
TMEM260-203ENST00000539559 PCGF6Q9BYE7 350 aa33.7■■■□□ 2.99
TMEM260-203ENST00000539559 NACADO15069 1562 aa33.57■■■□□ 2.96
TMEM260-203ENST00000539559 PPARGC1BQ86YN6 1023 aaKnown RBP33.42■■■□□ 2.94
TMEM260-203ENST00000539559 SCRIBQ14160 1630 aa33.38■■■□□ 2.93
TMEM260-203ENST00000539559 LOC105371045A0A1W2PR82 267 aa33.28■■■□□ 2.92
TMEM260-203ENST00000539559 RB1CC1Q8TDY2 1594 aa33.18■■■□□ 2.9
TMEM260-203ENST00000539559 TRIM26Q12899 539 aaPredicted RBP32.65■■■□□ 2.82
TMEM260-203ENST00000539559 RSF1Q96T23 1441 aaPredicted RBP32.63■■■□□ 2.81
TMEM260-203ENST00000539559 UNC13AQ9UPW8 1703 aa32.48■■■□□ 2.79
TMEM260-203ENST00000539559 CECR2Q9BXF3 1484 aa32.47■■■□□ 2.79
TMEM260-203ENST00000539559 FAM9AQ8IZU1 332 aaPredicted RBP32.39■■■□□ 2.78
TMEM260-203ENST00000539559 EHMT2Q96KQ7 1210 aa32.35■■■□□ 2.77
TMEM260-203ENST00000539559 MROH2BQ7Z745 1585 aa32.32■■■□□ 2.76
TMEM260-203ENST00000539559 TRIM41Q8WV44 630 aa32.31■■■□□ 2.76
TMEM260-203ENST00000539559 BAZ1AQ9NRL2 1556 aaPredicted RBP32.21■■■□□ 2.75
TMEM260-203ENST00000539559 BICRAQ9NZM4 1560 aa32.17■■■□□ 2.74
TMEM260-203ENST00000539559 PABPN1Q86U42 306 aaKnown RBP eCLIP32.12■■■□□ 2.73
TMEM260-203ENST00000539559 WIZO95785 1651 aa32.07■■■□□ 2.72
TMEM260-203ENST00000539559 ZEB1P37275 1124 aaPredicted RBP31.99■■■□□ 2.71
TMEM260-203ENST00000539559 SMARCA4P51532 1647 aa31.99■■■□□ 2.71
TMEM260-203ENST00000539559 TOP2AP11388 1531 aaKnown RBP31.71■■■□□ 2.67
TMEM260-203ENST00000539559 SCAF1Q9H7N4 1312 aaKnown RBP31.67■■■□□ 2.66
TMEM260-203ENST00000539559 PEG3Q9GZU2 1588 aa31.54■■■□□ 2.64
TMEM260-203ENST00000539559 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.53■■■□□ 2.64
TMEM260-203ENST00000539559 CCDC88BA6NC98 1476 aa31.46■■■□□ 2.63
TMEM260-203ENST00000539559 SMARCA2P51531 1590 aa31.44■■■□□ 2.62
TMEM260-203ENST00000539559 TTBK1Q5TCY1 1321 aaPredicted RBP31.39■■■□□ 2.62
TMEM260-203ENST00000539559 ATAD2BQ9ULI0 1458 aa31.38■■■□□ 2.61
TMEM260-203ENST00000539559 CCER1Q8TC90 406 aaPredicted RBP31.36■■■□□ 2.61
TMEM260-203ENST00000539559 EIF4G1Q04637 1599 aaKnown RBP31.32■■■□□ 2.6
TMEM260-203ENST00000539559 BAZ1BQ9UIG0 1483 aaKnown RBP31.25■■■□□ 2.59
TMEM260-203ENST00000539559 PELP1Q8IZL8 1130 aaKnown RBP31.19■■■□□ 2.58
TMEM260-203ENST00000539559 NEUROD1Q13562 356 aa31.11■■■□□ 2.57
TMEM260-203ENST00000539559 ABCC8Q09428 1581 aa31.08■■■□□ 2.57
TMEM260-203ENST00000539559 ACIN1Q9UKV3 1341 aaKnown RBP31.05■■■□□ 2.56
TMEM260-203ENST00000539559 NCAPD3P42695 1498 aa31.02■■■□□ 2.56
TMEM260-203ENST00000539559 DIEXFQ68CQ4 756 aaKnown RBP31■■■□□ 2.55
TMEM260-203ENST00000539559 HMGXB3Q12766 1538 aa30.97■■■□□ 2.55
TMEM260-203ENST00000539559 SOGA1O94964 1423 aa30.89■■■□□ 2.54
TMEM260-203ENST00000539559 CEP162Q5TB80 1403 aa30.89■■■□□ 2.54
TMEM260-203ENST00000539559 GTF3C3Q9Y5Q9 886 aa30.84■■■□□ 2.53
TMEM260-203ENST00000539559 WRNQ14191 1432 aaPredicted RBP eCLIP30.79■■■□□ 2.52
TMEM260-203ENST00000539559 UBTFP17480 764 aaKnown RBP30.79■■■□□ 2.52
TMEM260-203ENST00000539559 RUSC2Q8N2Y8 1516 aa30.77■■■□□ 2.52
TMEM260-203ENST00000539559 CENPBP07199 599 aaPredicted RBP30.7■■■□□ 2.5
TMEM260-203ENST00000539559 TNIKQ9UKE5 1360 aa30.68■■■□□ 2.5
TMEM260-203ENST00000539559 CSRNP3Q8WYN3 585 aa30.68■■■□□ 2.5
TMEM260-203ENST00000539559 CC2D2AQ9P2K1 1620 aa30.61■■■□□ 2.49
TMEM260-203ENST00000539559 YTHDC1Q96MU7 727 aaKnown RBP30.57■■■□□ 2.48
TMEM260-203ENST00000539559 ZNF316A6NFI3 1004 aaPredicted RBP30.55■■■□□ 2.48
TMEM260-203ENST00000539559 HNRNPUL2Q1KMD3 747 aaKnown RBP30.53■■■□□ 2.48
TMEM260-203ENST00000539559 SYNJ1O43426 1573 aa30.52■■■□□ 2.48
TMEM260-203ENST00000539559 EEA1Q15075 1411 aa30.49■■■□□ 2.47
TMEM260-203ENST00000539559 CFTRP13569 1480 aa30.47■■■□□ 2.47
TMEM260-203ENST00000539559 GOLGA3Q08378 1498 aa30.41■■■□□ 2.46
TMEM260-203ENST00000539559 RANGAP1P46060 587 aaPredicted RBP30.37■■■□□ 2.45
TMEM260-203ENST00000539559 MIER1Q8N108 512 aa30.35■■■□□ 2.45
TMEM260-203ENST00000539559 TOP2BQ02880 1626 aa30.34■■■□□ 2.45
TMEM260-203ENST00000539559 CADPSQ9ULU8 1353 aa30.3■■■□□ 2.44
TMEM260-203ENST00000539559 BIVM-ERCC5R4GMW8 1640 aa30.27■■■□□ 2.44
TMEM260-203ENST00000539559 PRDM2Q13029 1718 aa30.22■■■□□ 2.43
TMEM260-203ENST00000539559 CLIP1P30622 1438 aa30.2■■■□□ 2.42
TMEM260-203ENST00000539559 CUX1P39880 1505 aa30.17■■■□□ 2.42
TMEM260-203ENST00000539559 CEP164Q9UPV0 1460 aa30.15■■■□□ 2.42
TMEM260-203ENST00000539559 APLP2Q06481 763 aa30.09■■■□□ 2.41
TMEM260-203ENST00000539559 VPS8Q8N3P4 1428 aa30.05■■■□□ 2.4
TMEM260-203ENST00000539559 RAPGEF2Q9Y4G8 1499 aa30.05■■■□□ 2.4
TMEM260-203ENST00000539559 KIF21BO75037 1637 aa30.03■■■□□ 2.4
TMEM260-203ENST00000539559 FANCD2Q9BXW9 1451 aa29.96■■■□□ 2.39
TMEM260-203ENST00000539559 KIF27Q86VH2 1401 aa29.9■■■□□ 2.38
TMEM260-203ENST00000539559 NESP48681 1621 aa29.89■■■□□ 2.38
TMEM260-203ENST00000539559 LAMC3Q9Y6N6 1575 aa29.85■■■□□ 2.37
TMEM260-203ENST00000539559 DNAJC5BQ9UF47 199 aa29.8■■■□□ 2.36
TMEM260-203ENST00000539559 FGD5Q6ZNL6 1462 aa29.79■■■□□ 2.36
TMEM260-203ENST00000539559 PRXQ9BXM0 1461 aa29.78■■■□□ 2.36
TMEM260-203ENST00000539559 KANK4Q5T7N3 995 aaPredicted RBP29.77■■■□□ 2.36
TMEM260-203ENST00000539559 ERICH3Q5RHP9 1530 aa29.75■■■□□ 2.35
TMEM260-203ENST00000539559 DHX57Q6P158 1386 aaKnown RBP29.74■■■□□ 2.35
TMEM260-203ENST00000539559 DNMBPQ6XZF7 1577 aa29.73■■■□□ 2.35
TMEM260-203ENST00000539559 CUX2O14529 1486 aa29.71■■■□□ 2.35
TMEM260-203ENST00000539559 PDS5BQ9NTI5 1447 aa29.67■■■□□ 2.34
TMEM260-203ENST00000539559 TOPBP1Q92547 1522 aa29.67■■■□□ 2.34
TMEM260-203ENST00000539559 ARAP1Q96P48 1450 aa29.63■■■□□ 2.33
TMEM260-203ENST00000539559 MYT1Q01538 1121 aa29.61■■■□□ 2.33
TMEM260-203ENST00000539559 ITGAEP38570 1179 aa29.6■■■□□ 2.33
TMEM260-203ENST00000539559 IGF1RP08069 1367 aa29.59■■■□□ 2.33
TMEM260-203ENST00000539559 POLA1P09884 1462 aaPredicted RBP29.57■■■□□ 2.32
TMEM260-203ENST00000539559 URB2Q14146 1524 aaKnown RBP29.54■■■□□ 2.32
TMEM260-203ENST00000539559 CLSPNQ9HAW4 1339 aa29.51■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms