RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 NISCHQ9Y2I1 1504 aa26.22■■□□□ 1.79
SFSWAP-208ENST00000539506 SHROOM4Q9ULL8 1493 aa22.34■■□□□ 1.17
SFSWAP-208ENST00000539506 CCDC180Q9P1Z9 1646 aa22.25■■□□□ 1.15
SFSWAP-208ENST00000539506 ZCCHC6Q5VYS8 1495 aaKnown RBP22.17■■□□□ 1.14
SFSWAP-208ENST00000539506 SUPT5HO00267 1087 aaKnown RBP21.84■■□□□ 1.09
SFSWAP-208ENST00000539506 DCAF8L2P0C7V8 631 aa21.74■■□□□ 1.07
SFSWAP-208ENST00000539506 DCAF1Q9Y4B6 1507 aa21.48■■□□□ 1.03
SFSWAP-208ENST00000539506 CHIC1Q5VXU3 224 aa21.24■□□□□ 0.99
SFSWAP-208ENST00000539506 MYO15BQ96JP2 1530 aa21.2■□□□□ 0.98
SFSWAP-208ENST00000539506 PCGF6Q9BYE7 350 aa20.92■□□□□ 0.94
SFSWAP-208ENST00000539506 SCRIBQ14160 1630 aa20.91■□□□□ 0.94
SFSWAP-208ENST00000539506 PPARGC1BQ86YN6 1023 aaKnown RBP20.89■□□□□ 0.93
SFSWAP-208ENST00000539506 ABCC9O60706 1549 aa20.88■□□□□ 0.93
SFSWAP-208ENST00000539506 HRCP23327 699 aa20.85■□□□□ 0.93
SFSWAP-208ENST00000539506 RSF1Q96T23 1441 aaPredicted RBP20.76■□□□□ 0.91
SFSWAP-208ENST00000539506 LOC105371045A0A1W2PR82 267 aa20.64■□□□□ 0.9
SFSWAP-208ENST00000539506 NACADO15069 1562 aa20.6■□□□□ 0.89
SFSWAP-208ENST00000539506 CECR2Q9BXF3 1484 aa20.52■□□□□ 0.88
SFSWAP-208ENST00000539506 RB1CC1Q8TDY2 1594 aa20.52■□□□□ 0.88
SFSWAP-208ENST00000539506 MROH2BQ7Z745 1585 aa20.42■□□□□ 0.86
SFSWAP-208ENST00000539506 TRIM41Q8WV44 630 aa20.31■□□□□ 0.84
SFSWAP-208ENST00000539506 WIZO95785 1651 aa20.3■□□□□ 0.84
SFSWAP-208ENST00000539506 EHMT2Q96KQ7 1210 aa20.22■□□□□ 0.83
SFSWAP-208ENST00000539506 FAM9AQ8IZU1 332 aaPredicted RBP20.19■□□□□ 0.82
SFSWAP-208ENST00000539506 BAZ1AQ9NRL2 1556 aaPredicted RBP20.11■□□□□ 0.81
SFSWAP-208ENST00000539506 TRIM26Q12899 539 aaPredicted RBP20.06■□□□□ 0.8
SFSWAP-208ENST00000539506 UNC13AQ9UPW8 1703 aa20.05■□□□□ 0.8
SFSWAP-208ENST00000539506 EIF4G1Q04637 1599 aaKnown RBP20.01■□□□□ 0.79
SFSWAP-208ENST00000539506 SMARCA4P51532 1647 aa19.97■□□□□ 0.79
SFSWAP-208ENST00000539506 TOP2AP11388 1531 aaKnown RBP19.92■□□□□ 0.78
SFSWAP-208ENST00000539506 CCDC88BA6NC98 1476 aa19.89■□□□□ 0.78
SFSWAP-208ENST00000539506 PABPN1Q86U42 306 aaKnown RBP eCLIP19.87■□□□□ 0.778e-7■■□□□ 12.1
SFSWAP-208ENST00000539506 SMARCA2P51531 1590 aa19.85■□□□□ 0.77
SFSWAP-208ENST00000539506 BICRAQ9NZM4 1560 aa19.83■□□□□ 0.77
SFSWAP-208ENST00000539506 ABCC8Q09428 1581 aa19.83■□□□□ 0.76
SFSWAP-208ENST00000539506 SCAF1Q9H7N4 1312 aaKnown RBP19.73■□□□□ 0.75
SFSWAP-208ENST00000539506 SOGA1O94964 1423 aa19.64■□□□□ 0.74
SFSWAP-208ENST00000539506 TTBK1Q5TCY1 1321 aaPredicted RBP19.59■□□□□ 0.73
SFSWAP-208ENST00000539506 PEG3Q9GZU2 1588 aa19.59■□□□□ 0.73
SFSWAP-208ENST00000539506 RUSC2Q8N2Y8 1516 aa19.58■□□□□ 0.72
SFSWAP-208ENST00000539506 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.51■□□□□ 0.71
SFSWAP-208ENST00000539506 ZEB1P37275 1124 aaPredicted RBP19.51■□□□□ 0.71
SFSWAP-208ENST00000539506 ATAD2BQ9ULI0 1458 aa19.5■□□□□ 0.71
SFSWAP-208ENST00000539506 CSRNP3Q8WYN3 585 aa19.46■□□□□ 0.71
SFSWAP-208ENST00000539506 CEP162Q5TB80 1403 aa19.46■□□□□ 0.71
SFSWAP-208ENST00000539506 WRNQ14191 1432 aaPredicted RBP eCLIP19.45■□□□□ 0.79e-6■■■■■ 50.1
SFSWAP-208ENST00000539506 TNIKQ9UKE5 1360 aa19.42■□□□□ 0.7
SFSWAP-208ENST00000539506 SYNJ1O43426 1573 aa19.4■□□□□ 0.7
SFSWAP-208ENST00000539506 BAZ1BQ9UIG0 1483 aaKnown RBP19.39■□□□□ 0.7
SFSWAP-208ENST00000539506 EEA1Q15075 1411 aa19.39■□□□□ 0.69
SFSWAP-208ENST00000539506 CCER1Q8TC90 406 aaPredicted RBP19.36■□□□□ 0.69
SFSWAP-208ENST00000539506 UBTFP17480 764 aaKnown RBP19.35■□□□□ 0.69
SFSWAP-208ENST00000539506 NEUROD1Q13562 356 aa19.34■□□□□ 0.69
SFSWAP-208ENST00000539506 PELP1Q8IZL8 1130 aaKnown RBP19.33■□□□□ 0.69
SFSWAP-208ENST00000539506 GOLGA3Q08378 1498 aa19.3■□□□□ 0.68
SFSWAP-208ENST00000539506 GTF3C3Q9Y5Q9 886 aa19.22■□□□□ 0.67
SFSWAP-208ENST00000539506 ACIN1Q9UKV3 1341 aaKnown RBP19.21■□□□□ 0.67
SFSWAP-208ENST00000539506 CEP164Q9UPV0 1460 aa19.19■□□□□ 0.66
SFSWAP-208ENST00000539506 KIF21BO75037 1637 aa19.18■□□□□ 0.66
SFSWAP-208ENST00000539506 YTHDC1Q96MU7 727 aaKnown RBP19.15■□□□□ 0.66
SFSWAP-208ENST00000539506 DIEXFQ68CQ4 756 aaKnown RBP19.15■□□□□ 0.66
SFSWAP-208ENST00000539506 RAPGEF2Q9Y4G8 1499 aa19.15■□□□□ 0.66
SFSWAP-208ENST00000539506 TOP2BQ02880 1626 aa19.13■□□□□ 0.65
SFSWAP-208ENST00000539506 NCAPD3P42695 1498 aa19.11■□□□□ 0.65
SFSWAP-208ENST00000539506 CLIP1P30622 1438 aa19.1■□□□□ 0.65
SFSWAP-208ENST00000539506 HMGXB3Q12766 1538 aa19.07■□□□□ 0.64
SFSWAP-208ENST00000539506 BIVM-ERCC5R4GMW8 1640 aa19.05■□□□□ 0.64
SFSWAP-208ENST00000539506 RANGAP1P46060 587 aaPredicted RBP19.03■□□□□ 0.64
SFSWAP-208ENST00000539506 VPS8Q8N3P4 1428 aa19■□□□□ 0.63
SFSWAP-208ENST00000539506 CUX1P39880 1505 aa19■□□□□ 0.63
SFSWAP-208ENST00000539506 CENPBP07199 599 aaPredicted RBP18.96■□□□□ 0.63
SFSWAP-208ENST00000539506 CFTRP13569 1480 aa18.95■□□□□ 0.62
SFSWAP-208ENST00000539506 PRXQ9BXM0 1461 aa18.95■□□□□ 0.62
SFSWAP-208ENST00000539506 HNRNPUL2Q1KMD3 747 aaKnown RBP18.91■□□□□ 0.62
SFSWAP-208ENST00000539506 ERICH3Q5RHP9 1530 aa18.88■□□□□ 0.61
SFSWAP-208ENST00000539506 ARAP1Q96P48 1450 aa18.85■□□□□ 0.61
SFSWAP-208ENST00000539506 KIF27Q86VH2 1401 aa18.82■□□□□ 0.6
SFSWAP-208ENST00000539506 APLP2Q06481 763 aa18.81■□□□□ 0.6
SFSWAP-208ENST00000539506 KANK4Q5T7N3 995 aaPredicted RBP18.78■□□□□ 0.6
SFSWAP-208ENST00000539506 MIER1Q8N108 512 aa18.76■□□□□ 0.59
SFSWAP-208ENST00000539506 ZNF316A6NFI3 1004 aaPredicted RBP18.74■□□□□ 0.59
SFSWAP-208ENST00000539506 CADPSQ9ULU8 1353 aa18.74■□□□□ 0.59
SFSWAP-208ENST00000539506 PRDM2Q13029 1718 aa18.72■□□□□ 0.59
SFSWAP-208ENST00000539506 IGF1RP08069 1367 aa18.7■□□□□ 0.58
SFSWAP-208ENST00000539506 ARHGAP35Q9NRY4 1499 aa18.7■□□□□ 0.58
SFSWAP-208ENST00000539506 CUX2O14529 1486 aa18.69■□□□□ 0.58
SFSWAP-208ENST00000539506 CC2D2AQ9P2K1 1620 aa18.67■□□□□ 0.58
SFSWAP-208ENST00000539506 FGD5Q6ZNL6 1462 aa18.65■□□□□ 0.58
SFSWAP-208ENST00000539506 CARMIL1Q5VZK9 1371 aa18.58■□□□□ 0.56
SFSWAP-208ENST00000539506 RRBP1Q9P2E9 1410 aaKnown RBP18.57■□□□□ 0.56
SFSWAP-208ENST00000539506 FANCD2Q9BXW9 1451 aa18.56■□□□□ 0.56
SFSWAP-208ENST00000539506 DHX57Q6P158 1386 aaKnown RBP18.56■□□□□ 0.56
SFSWAP-208ENST00000539506 NESP48681 1621 aa18.52■□□□□ 0.55
SFSWAP-208ENST00000539506 RAD54L2Q9Y4B4 1467 aa18.51■□□□□ 0.55
SFSWAP-208ENST00000539506 CCNB3Q8WWL7 1395 aa18.48■□□□□ 0.55
SFSWAP-208ENST00000539506 POLA1P09884 1462 aaPredicted RBP18.44■□□□□ 0.54
SFSWAP-208ENST00000539506 TOPBP1Q92547 1522 aa18.44■□□□□ 0.54
SFSWAP-208ENST00000539506 ITGAEP38570 1179 aa18.44■□□□□ 0.54
SFSWAP-208ENST00000539506 P3H3Q8IVL6 736 aa18.44■□□□□ 0.54
SFSWAP-208ENST00000539506 TIAM1Q13009 1591 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms