RNA–Protein interactions for RNA: ENST00000533229.1

CACNA1E-208, Transcript of calcium voltage-gated channel subunit alpha1 E, humanhuman

TSL 1 (best)

Gene CACNA1E, Length 2,142 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1E-208ENST00000533229 NISCHQ9Y2I1 1504 aa32.64■■■□□ 2.82
CACNA1E-208ENST00000533229 CCDC180Q9P1Z9 1646 aa27.8■■■□□ 2.04
CACNA1E-208ENST00000533229 SHROOM4Q9ULL8 1493 aa27.58■■■□□ 2.01
CACNA1E-208ENST00000533229 ZCCHC6Q5VYS8 1495 aaKnown RBP27.56■■■□□ 2
CACNA1E-208ENST00000533229 DCAF8L2P0C7V8 631 aa27.07■■□□□ 1.92
CACNA1E-208ENST00000533229 SUPT5HO00267 1087 aaKnown RBP26.93■■□□□ 1.9
CACNA1E-208ENST00000533229 DCAF1Q9Y4B6 1507 aa26.8■■□□□ 1.88
CACNA1E-208ENST00000533229 MYO15BQ96JP2 1530 aa26.13■■□□□ 1.77
CACNA1E-208ENST00000533229 CHIC1Q5VXU3 224 aa26.11■■□□□ 1.77
CACNA1E-208ENST00000533229 SCRIBQ14160 1630 aa26.01■■□□□ 1.76
CACNA1E-208ENST00000533229 ABCC9O60706 1549 aa26■■□□□ 1.75
CACNA1E-208ENST00000533229 NACADO15069 1562 aa25.81■■□□□ 1.72
CACNA1E-208ENST00000533229 RSF1Q96T23 1441 aaPredicted RBP25.75■■□□□ 1.71
CACNA1E-208ENST00000533229 CECR2Q9BXF3 1484 aa25.49■■□□□ 1.67
CACNA1E-208ENST00000533229 RB1CC1Q8TDY2 1594 aa25.41■■□□□ 1.66
CACNA1E-208ENST00000533229 MROH2BQ7Z745 1585 aa25.36■■□□□ 1.65
CACNA1E-208ENST00000533229 LOC105371045A0A1W2PR82 267 aa25.31■■□□□ 1.64
CACNA1E-208ENST00000533229 WIZO95785 1651 aa25.17■■□□□ 1.62
CACNA1E-208ENST00000533229 TRIM41Q8WV44 630 aa25.12■■□□□ 1.61
CACNA1E-208ENST00000533229 BAZ1AQ9NRL2 1556 aaPredicted RBP25.06■■□□□ 1.6
CACNA1E-208ENST00000533229 PCGF6Q9BYE7 350 aa24.98■■□□□ 1.59
CACNA1E-208ENST00000533229 UNC13AQ9UPW8 1703 aa24.98■■□□□ 1.59
CACNA1E-208ENST00000533229 FAM9AQ8IZU1 332 aaPredicted RBP24.88■■□□□ 1.57
CACNA1E-208ENST00000533229 SMARCA4P51532 1647 aa24.87■■□□□ 1.57
CACNA1E-208ENST00000533229 PABPN1Q86U42 306 aaKnown RBP eCLIP24.84■■□□□ 1.57
CACNA1E-208ENST00000533229 HRCP23327 699 aa24.8■■□□□ 1.56
CACNA1E-208ENST00000533229 TOP2AP11388 1531 aaKnown RBP24.79■■□□□ 1.56
CACNA1E-208ENST00000533229 BICRAQ9NZM4 1560 aa24.79■■□□□ 1.56
CACNA1E-208ENST00000533229 EIF4G1Q04637 1599 aaKnown RBP24.75■■□□□ 1.55
CACNA1E-208ENST00000533229 CCDC88BA6NC98 1476 aa24.71■■□□□ 1.55
CACNA1E-208ENST00000533229 SMARCA2P51531 1590 aa24.65■■□□□ 1.54
CACNA1E-208ENST00000533229 EHMT2Q96KQ7 1210 aa24.64■■□□□ 1.54
CACNA1E-208ENST00000533229 TRIM26Q12899 539 aaPredicted RBP24.58■■□□□ 1.52
CACNA1E-208ENST00000533229 ABCC8Q09428 1581 aa24.51■■□□□ 1.51
CACNA1E-208ENST00000533229 PEG3Q9GZU2 1588 aa24.45■■□□□ 1.5
CACNA1E-208ENST00000533229 ATAD2BQ9ULI0 1458 aa24.35■■□□□ 1.49
CACNA1E-208ENST00000533229 PPARGC1BQ86YN6 1023 aaKnown RBP24.34■■□□□ 1.49
CACNA1E-208ENST00000533229 SOGA1O94964 1423 aa24.28■■□□□ 1.48
CACNA1E-208ENST00000533229 BAZ1BQ9UIG0 1483 aaKnown RBP24.22■■□□□ 1.47
CACNA1E-208ENST00000533229 RUSC2Q8N2Y8 1516 aa24.17■■□□□ 1.46
CACNA1E-208ENST00000533229 WRNQ14191 1432 aaPredicted RBP eCLIP24.16■■□□□ 1.46
CACNA1E-208ENST00000533229 CSRNP3Q8WYN3 585 aa24.11■■□□□ 1.45
CACNA1E-208ENST00000533229 EEA1Q15075 1411 aa24.08■■□□□ 1.44
CACNA1E-208ENST00000533229 SYNJ1O43426 1573 aa24.04■■□□□ 1.44
CACNA1E-208ENST00000533229 TNIKQ9UKE5 1360 aa24.02■■□□□ 1.44
CACNA1E-208ENST00000533229 CEP162Q5TB80 1403 aa24.01■■□□□ 1.43
CACNA1E-208ENST00000533229 UBTFP17480 764 aaKnown RBP23.94■■□□□ 1.42
CACNA1E-208ENST00000533229 NCAPD3P42695 1498 aa23.93■■□□□ 1.42
CACNA1E-208ENST00000533229 GOLGA3Q08378 1498 aa23.89■■□□□ 1.42
CACNA1E-208ENST00000533229 ZEB1P37275 1124 aaPredicted RBP23.88■■□□□ 1.41
CACNA1E-208ENST00000533229 HMGXB3Q12766 1538 aa23.86■■□□□ 1.41
CACNA1E-208ENST00000533229 CEP164Q9UPV0 1460 aa23.8■■□□□ 1.4
CACNA1E-208ENST00000533229 TTBK1Q5TCY1 1321 aaPredicted RBP23.78■■□□□ 1.4
CACNA1E-208ENST00000533229 TOP2BQ02880 1626 aa23.76■■□□□ 1.39
CACNA1E-208ENST00000533229 KIF21BO75037 1637 aa23.75■■□□□ 1.39
CACNA1E-208ENST00000533229 RAPGEF2Q9Y4G8 1499 aa23.69■■□□□ 1.38
CACNA1E-208ENST00000533229 BIVM-ERCC5R4GMW8 1640 aa23.67■■□□□ 1.38
CACNA1E-208ENST00000533229 CFTRP13569 1480 aa23.66■■□□□ 1.38
CACNA1E-208ENST00000533229 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.65■■□□□ 1.38
CACNA1E-208ENST00000533229 CUX1P39880 1505 aa23.62■■□□□ 1.37
CACNA1E-208ENST00000533229 CLIP1P30622 1438 aa23.62■■□□□ 1.37
CACNA1E-208ENST00000533229 CCER1Q8TC90 406 aaPredicted RBP23.54■■□□□ 1.36
CACNA1E-208ENST00000533229 RANGAP1P46060 587 aaPredicted RBP23.51■■□□□ 1.35
CACNA1E-208ENST00000533229 PRXQ9BXM0 1461 aa23.51■■□□□ 1.35
CACNA1E-208ENST00000533229 VPS8Q8N3P4 1428 aa23.49■■□□□ 1.35
CACNA1E-208ENST00000533229 CADPSQ9ULU8 1353 aa23.45■■□□□ 1.34
CACNA1E-208ENST00000533229 KIF27Q86VH2 1401 aa23.43■■□□□ 1.34
CACNA1E-208ENST00000533229 ERICH3Q5RHP9 1530 aa23.43■■□□□ 1.34
CACNA1E-208ENST00000533229 CC2D2AQ9P2K1 1620 aa23.41■■□□□ 1.34
CACNA1E-208ENST00000533229 APLP2Q06481 763 aa23.31■■□□□ 1.32
CACNA1E-208ENST00000533229 PRDM2Q13029 1718 aa23.3■■□□□ 1.32
CACNA1E-208ENST00000533229 ARAP1Q96P48 1450 aa23.29■■□□□ 1.32
CACNA1E-208ENST00000533229 CUX2O14529 1486 aa23.26■■□□□ 1.31
CACNA1E-208ENST00000533229 IGF1RP08069 1367 aa23.26■■□□□ 1.31
CACNA1E-208ENST00000533229 HNRNPUL2Q1KMD3 747 aaKnown RBP23.25■■□□□ 1.31
CACNA1E-208ENST00000533229 FGD5Q6ZNL6 1462 aa23.22■■□□□ 1.31
CACNA1E-208ENST00000533229 FANCD2Q9BXW9 1451 aa23.19■■□□□ 1.3
CACNA1E-208ENST00000533229 KANK4Q5T7N3 995 aaPredicted RBP23.16■■□□□ 1.3
CACNA1E-208ENST00000533229 ARHGAP35Q9NRY4 1499 aa23.14■■□□□ 1.3
CACNA1E-208ENST00000533229 NESP48681 1621 aa23.12■■□□□ 1.29
CACNA1E-208ENST00000533229 CARMIL1Q5VZK9 1371 aa23.12■■□□□ 1.29
CACNA1E-208ENST00000533229 RAD54L2Q9Y4B4 1467 aa23.04■■□□□ 1.28
CACNA1E-208ENST00000533229 DNMBPQ6XZF7 1577 aa23.02■■□□□ 1.28
CACNA1E-208ENST00000533229 TOPBP1Q92547 1522 aa23.02■■□□□ 1.27
CACNA1E-208ENST00000533229 POLA1P09884 1462 aaPredicted RBP23■■□□□ 1.27
CACNA1E-208ENST00000533229 DNAJC5BQ9UF47 199 aa22.99■■□□□ 1.27
CACNA1E-208ENST00000533229 ABCA10Q8WWZ4 1543 aa22.97■■□□□ 1.27
CACNA1E-208ENST00000533229 DIEXFQ68CQ4 756 aaKnown RBP22.93■■□□□ 1.26
CACNA1E-208ENST00000533229 RRBP1Q9P2E9 1410 aaKnown RBP22.92■■□□□ 1.26
CACNA1E-208ENST00000533229 LAMC3Q9Y6N6 1575 aa22.89■■□□□ 1.25
CACNA1E-208ENST00000533229 URB2Q14146 1524 aaKnown RBP22.88■■□□□ 1.25
CACNA1E-208ENST00000533229 ZNF316A6NFI3 1004 aaPredicted RBP22.85■■□□□ 1.25
CACNA1E-208ENST00000533229 P3H3Q8IVL6 736 aa22.85■■□□□ 1.25
CACNA1E-208ENST00000533229 CCNB3Q8WWL7 1395 aa22.83■■□□□ 1.24
CACNA1E-208ENST00000533229 DHX57Q6P158 1386 aaKnown RBP22.81■■□□□ 1.24
CACNA1E-208ENST00000533229 TIAM1Q13009 1591 aa22.8■■□□□ 1.24
CACNA1E-208ENST00000533229 MAP3K1Q13233 1512 aa22.79■■□□□ 1.24
CACNA1E-208ENST00000533229 TDRD9Q8NDG6 1382 aaKnown RBP22.78■■□□□ 1.24
CACNA1E-208ENST00000533229 PDS5BQ9NTI5 1447 aa22.77■■□□□ 1.24
CACNA1E-208ENST00000533229 FHAD1B1AJZ9 1412 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms