RNA–Protein interactions for RNA: ENST00000532793.1

PPFIA1-223, Transcript of PTPRF interacting protein alpha 1, humanhuman

TSL 3

Gene PPFIA1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA1-223ENST00000532793 AEBP2Q6ZN18 517 aaPredicted RBP29.52■■■□□ 2.32
PPFIA1-223ENST00000532793 CHIC1Q5VXU3 224 aa27.33■■□□□ 1.97
PPFIA1-223ENST00000532793 SENP3Q9H4L4 574 aaPredicted RBP25.12■■□□□ 1.61
PPFIA1-223ENST00000532793 PHF23Q9BUL5 403 aaPredicted RBP24.75■■□□□ 1.55
PPFIA1-223ENST00000532793 NISCHQ9Y2I1 1504 aa23.93■■□□□ 1.42
PPFIA1-223ENST00000532793 FOXD1Q16676 465 aa23.68■■□□□ 1.38
PPFIA1-223ENST00000532793 POTEDQ86YR6 584 aa23.64■■□□□ 1.37
PPFIA1-223ENST00000532793 MSH5O43196 834 aa22.36■■□□□ 1.17
PPFIA1-223ENST00000532793 PIAS4Q8N2W9 510 aaPredicted RBP21.79■■□□□ 1.08
PPFIA1-223ENST00000532793 CCDC180Q9P1Z9 1646 aa21.56■■□□□ 1.04
PPFIA1-223ENST00000532793 PPP6R1Q9UPN7 881 aa21.47■■□□□ 1.03
PPFIA1-223ENST00000532793 ABCC9O60706 1549 aa21.45■■□□□ 1.02
PPFIA1-223ENST00000532793 ADRA2BP18089 450 aa21.28■■□□□ 1
PPFIA1-223ENST00000532793 PLPPR3Q6T4P5 718 aa21.01■□□□□ 0.95
PPFIA1-223ENST00000532793 RB1CC1Q8TDY2 1594 aa20.5■□□□□ 0.87
PPFIA1-223ENST00000532793 NACADO15069 1562 aa20.34■□□□□ 0.85
PPFIA1-223ENST00000532793 DCAF8L2P0C7V8 631 aa20.25■□□□□ 0.83
PPFIA1-223ENST00000532793 UNC13AQ9UPW8 1703 aa20.05■□□□□ 0.8
PPFIA1-223ENST00000532793 MYO15BQ96JP2 1530 aa20.02■□□□□ 0.79
PPFIA1-223ENST00000532793 DNAJC5BQ9UF47 199 aa19.94■□□□□ 0.78
PPFIA1-223ENST00000532793 PABPN1Q86U42 306 aaKnown RBP eCLIP19.92■□□□□ 0.78
PPFIA1-223ENST00000532793 MAPK8IP2Q13387 824 aaPredicted RBP19.88■□□□□ 0.77
PPFIA1-223ENST00000532793 ZCCHC6Q5VYS8 1495 aaKnown RBP19.84■□□□□ 0.77
PPFIA1-223ENST00000532793 DMRT2Q9Y5R5 561 aa19.83■□□□□ 0.77
PPFIA1-223ENST00000532793 CACNB1Q02641 598 aaPredicted RBP19.81■□□□□ 0.76
PPFIA1-223ENST00000532793 BICRAQ9NZM4 1560 aa19.78■□□□□ 0.76
PPFIA1-223ENST00000532793 DCAF1Q9Y4B6 1507 aa19.77■□□□□ 0.76
PPFIA1-223ENST00000532793 SCRIBQ14160 1630 aa19.62■□□□□ 0.73
PPFIA1-223ENST00000532793 SHROOM4Q9ULL8 1493 aa19.6■□□□□ 0.73
PPFIA1-223ENST00000532793 CC2D2AQ9P2K1 1620 aa19.4■□□□□ 0.7
PPFIA1-223ENST00000532793 EIF4G1Q04637 1599 aaKnown RBP19.36■□□□□ 0.69
PPFIA1-223ENST00000532793 CECR2Q9BXF3 1484 aa19.33■□□□□ 0.68
PPFIA1-223ENST00000532793 SCAF1Q9H7N4 1312 aaKnown RBP19.24■□□□□ 0.67
PPFIA1-223ENST00000532793 RNF39Q9H2S5 420 aa19.1■□□□□ 0.65
PPFIA1-223ENST00000532793 DCAF8L1A6NGE4 600 aa18.99■□□□□ 0.63
PPFIA1-223ENST00000532793 HOXD11P31277 338 aaPredicted RBP18.73■□□□□ 0.59
PPFIA1-223ENST00000532793 SMARCA4P51532 1647 aa18.7■□□□□ 0.58
PPFIA1-223ENST00000532793 NCAPD3P42695 1498 aa18.7■□□□□ 0.58
PPFIA1-223ENST00000532793 SMARCA2P51531 1590 aa18.68■□□□□ 0.58
PPFIA1-223ENST00000532793 C1QBPQ07021 282 aaKnown RBP18.68■□□□□ 0.58
PPFIA1-223ENST00000532793 ATAD2BQ9ULI0 1458 aa18.65■□□□□ 0.58
PPFIA1-223ENST00000532793 BAZ1AQ9NRL2 1556 aaPredicted RBP18.64■□□□□ 0.57
PPFIA1-223ENST00000532793 HMGXB3Q12766 1538 aa18.63■□□□□ 0.57
PPFIA1-223ENST00000532793 ERCC6Q03468 1493 aa18.59■□□□□ 0.57
PPFIA1-223ENST00000532793 BAZ1BQ9UIG0 1483 aaKnown RBP18.54■□□□□ 0.56
PPFIA1-223ENST00000532793 CUX2O14529 1486 aa18.5■□□□□ 0.55
PPFIA1-223ENST00000532793 PEG3Q9GZU2 1588 aa18.48■□□□□ 0.55
PPFIA1-223ENST00000532793 MROH2BQ7Z745 1585 aa18.42■□□□□ 0.54
PPFIA1-223ENST00000532793 NESP48681 1621 aa18.4■□□□□ 0.54
PPFIA1-223ENST00000532793 DNAJC5Q9H3Z4 198 aa18.37■□□□□ 0.53
PPFIA1-223ENST00000532793 LAMC3Q9Y6N6 1575 aa18.36■□□□□ 0.53
PPFIA1-223ENST00000532793 PPP4R3CPQ6ZMV5 832 aa18.35■□□□□ 0.53
PPFIA1-223ENST00000532793 POTEHQ6S545 545 aa18.29■□□□□ 0.52
PPFIA1-223ENST00000532793 RNF216Q9NWF9 866 aaPredicted RBP18.28■□□□□ 0.52
PPFIA1-223ENST00000532793 KIF21AQ7Z4S6 1674 aa18.27■□□□□ 0.52
PPFIA1-223ENST00000532793 THOC2Q8NI27 1593 aaKnown RBP18.26■□□□□ 0.51
PPFIA1-223ENST00000532793 WIZO95785 1651 aa18.26■□□□□ 0.51
PPFIA1-223ENST00000532793 PDS5BQ9NTI5 1447 aa18.23■□□□□ 0.51
PPFIA1-223ENST00000532793 CNKSR2Q8WXI2 1034 aa18.18■□□□□ 0.5
PPFIA1-223ENST00000532793 CADPSQ9ULU8 1353 aa18.15■□□□□ 0.5
PPFIA1-223ENST00000532793 MRC2Q9UBG0 1479 aa18.07■□□□□ 0.48
PPFIA1-223ENST00000532793 RSF1Q96T23 1441 aaPredicted RBP18.03■□□□□ 0.48
PPFIA1-223ENST00000532793 TOP2AP11388 1531 aaKnown RBP18.03■□□□□ 0.48
PPFIA1-223ENST00000532793 CEP164Q9UPV0 1460 aa18.02■□□□□ 0.48
PPFIA1-223ENST00000532793 WDR62O43379 1518 aa18.01■□□□□ 0.47
PPFIA1-223ENST00000532793 FANCD2Q9BXW9 1451 aa17.97■□□□□ 0.47
PPFIA1-223ENST00000532793 CFTRP13569 1480 aa17.95■□□□□ 0.46
PPFIA1-223ENST00000532793 PRDM2Q13029 1718 aa17.94■□□□□ 0.46
PPFIA1-223ENST00000532793 URB2Q14146 1524 aaKnown RBP17.78■□□□□ 0.44
PPFIA1-223ENST00000532793 CCDC88BA6NC98 1476 aa17.77■□□□□ 0.44
PPFIA1-223ENST00000532793 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.75■□□□□ 0.43
PPFIA1-223ENST00000532793 TRIM41Q8WV44 630 aa17.66■□□□□ 0.42
PPFIA1-223ENST00000532793 ABCC8Q09428 1581 aa17.66■□□□□ 0.42
PPFIA1-223ENST00000532793 OSCARQ8IYS5 282 aa17.65■□□□□ 0.42
PPFIA1-223ENST00000532793 IFT140Q96RY7 1462 aa17.64■□□□□ 0.41
PPFIA1-223ENST00000532793 TOPBP1Q92547 1522 aa17.63■□□□□ 0.41
PPFIA1-223ENST00000532793 DNMBPQ6XZF7 1577 aa17.6■□□□□ 0.41
PPFIA1-223ENST00000532793 DSG3P32926 999 aa17.57■□□□□ 0.4
PPFIA1-223ENST00000532793 ZNF608Q9ULD9 1512 aaPredicted RBP17.55■□□□□ 0.4
PPFIA1-223ENST00000532793 EIF4G3O43432 1585 aaKnown RBP17.54■□□□□ 0.4
PPFIA1-223ENST00000532793 TARBP1Q13395 1621 aaKnown RBP17.47■□□□□ 0.39
PPFIA1-223ENST00000532793 SPINK5Q9NQ38 1064 aaPredicted RBP17.46■□□□□ 0.39
PPFIA1-223ENST00000532793 CHD1O14646 1710 aa17.45■□□□□ 0.38
PPFIA1-223ENST00000532793 RIMBP3CA6NJZ7 1639 aa17.44■□□□□ 0.38
PPFIA1-223ENST00000532793 RIMBP3BA6NNM3 1639 aa17.44■□□□□ 0.38
PPFIA1-223ENST00000532793 RIMBP3Q9UFD9 1639 aa17.44■□□□□ 0.38
PPFIA1-223ENST00000532793 POLA1P09884 1462 aaPredicted RBP17.44■□□□□ 0.38
PPFIA1-223ENST00000532793 AQRO60306 1485 aaKnown RBP eCLIP17.41■□□□□ 0.38
PPFIA1-223ENST00000532793 U3KPZ7 1027 aaPredicted RBP17.39■□□□□ 0.37
PPFIA1-223ENST00000532793 SOGA1O94964 1423 aa17.38■□□□□ 0.37
PPFIA1-223ENST00000532793 FBLN2P98095 1184 aa17.37■□□□□ 0.37
PPFIA1-223ENST00000532793 ARHGEF11O15085 1522 aa17.37■□□□□ 0.37
PPFIA1-223ENST00000532793 WDR97A6NE52 1622 aa17.36■□□□□ 0.37
PPFIA1-223ENST00000532793 FGD5Q6ZNL6 1462 aa17.36■□□□□ 0.37
PPFIA1-223ENST00000532793 RAD54L2Q9Y4B4 1467 aa17.36■□□□□ 0.37
PPFIA1-223ENST00000532793 CAPN15O75808 1086 aa17.35■□□□□ 0.37
PPFIA1-223ENST00000532793 SUPT5HO00267 1087 aaKnown RBP17.32■□□□□ 0.36
PPFIA1-223ENST00000532793 CUX1P39880 1505 aa17.31■□□□□ 0.36
PPFIA1-223ENST00000532793 TDRD9Q8NDG6 1382 aaKnown RBP17.3■□□□□ 0.36
PPFIA1-223ENST00000532793 SNAPC4Q5SXM2 1469 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms