RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 NISCHQ9Y2I1 1504 aa22.62■■□□□ 1.21
TRIM3-211ENST00000532542 DCAF8L2P0C7V8 631 aa20.02■□□□□ 0.8
TRIM3-211ENST00000532542 SHROOM4Q9ULL8 1493 aa19.53■□□□□ 0.72
TRIM3-211ENST00000532542 CCDC180Q9P1Z9 1646 aa19.25■□□□□ 0.67
TRIM3-211ENST00000532542 SUPT5HO00267 1087 aaKnown RBP19.25■□□□□ 0.67
TRIM3-211ENST00000532542 ZCCHC6Q5VYS8 1495 aaKnown RBP18.94■□□□□ 0.62
TRIM3-211ENST00000532542 ABCC9O60706 1549 aa18.67■□□□□ 0.58
TRIM3-211ENST00000532542 DCAF1Q9Y4B6 1507 aa18.46■□□□□ 0.55
TRIM3-211ENST00000532542 SCRIBQ14160 1630 aa18.21■□□□□ 0.51
TRIM3-211ENST00000532542 NACADO15069 1562 aa18.19■□□□□ 0.5
TRIM3-211ENST00000532542 MYO15BQ96JP2 1530 aa18.09■□□□□ 0.49
TRIM3-211ENST00000532542 CHIC1Q5VXU3 224 aa18.08■□□□□ 0.48
TRIM3-211ENST00000532542 RB1CC1Q8TDY2 1594 aa18.08■□□□□ 0.48
TRIM3-211ENST00000532542 TRIM41Q8WV44 630 aa18.03■□□□□ 0.48
TRIM3-211ENST00000532542 PABPN1Q86U42 306 aaKnown RBP eCLIP17.95■□□□□ 0.46
TRIM3-211ENST00000532542 FAM9AQ8IZU1 332 aaPredicted RBP17.87■□□□□ 0.45
TRIM3-211ENST00000532542 RSF1Q96T23 1441 aaPredicted RBP17.8■□□□□ 0.44
TRIM3-211ENST00000532542 EHMT2Q96KQ7 1210 aa17.8■□□□□ 0.44
TRIM3-211ENST00000532542 CECR2Q9BXF3 1484 aa17.6■□□□□ 0.41
TRIM3-211ENST00000532542 BAZ1AQ9NRL2 1556 aaPredicted RBP17.58■□□□□ 0.4
TRIM3-211ENST00000532542 LOC105371045A0A1W2PR82 267 aa17.57■□□□□ 0.4
TRIM3-211ENST00000532542 PCGF6Q9BYE7 350 aa17.48■□□□□ 0.39
TRIM3-211ENST00000532542 MROH2BQ7Z745 1585 aa17.47■□□□□ 0.39
TRIM3-211ENST00000532542 UBTFP17480 764 aaKnown RBP17.42■□□□□ 0.38
TRIM3-211ENST00000532542 APLP2Q06481 763 aa17.35■□□□□ 0.37
TRIM3-211ENST00000532542 WIZO95785 1651 aa17.27■□□□□ 0.36
TRIM3-211ENST00000532542 BAZ1BQ9UIG0 1483 aaKnown RBP17.25■□□□□ 0.35
TRIM3-211ENST00000532542 TRIM26Q12899 539 aaPredicted RBP17.24■□□□□ 0.35
TRIM3-211ENST00000532542 SMARCA4P51532 1647 aa17.23■□□□□ 0.35
TRIM3-211ENST00000532542 TOP2AP11388 1531 aaKnown RBP17.2■□□□□ 0.34
TRIM3-211ENST00000532542 RANGAP1P46060 587 aaPredicted RBP17.18■□□□□ 0.34
TRIM3-211ENST00000532542 CCDC88BA6NC98 1476 aa17.15■□□□□ 0.34
TRIM3-211ENST00000532542 SMARCA2P51531 1590 aa17.14■□□□□ 0.33
TRIM3-211ENST00000532542 CSRNP3Q8WYN3 585 aa17.14■□□□□ 0.33
TRIM3-211ENST00000532542 TTBK1Q5TCY1 1321 aaPredicted RBP17.13■□□□□ 0.33
TRIM3-211ENST00000532542 ATAD2BQ9ULI0 1458 aa17.05■□□□□ 0.32
TRIM3-211ENST00000532542 PPARGC1BQ86YN6 1023 aaKnown RBP17.04■□□□□ 0.32
TRIM3-211ENST00000532542 ZEB1P37275 1124 aaPredicted RBP17.04■□□□□ 0.32
TRIM3-211ENST00000532542 WRNQ14191 1432 aaPredicted RBP eCLIP17.03■□□□□ 0.32
TRIM3-211ENST00000532542 EEA1Q15075 1411 aa17.01■□□□□ 0.31
TRIM3-211ENST00000532542 BICRAQ9NZM4 1560 aa16.98■□□□□ 0.31
TRIM3-211ENST00000532542 HRCP23327 699 aa16.97■□□□□ 0.31
TRIM3-211ENST00000532542 UNC13AQ9UPW8 1703 aa16.93■□□□□ 0.3
TRIM3-211ENST00000532542 CCER1Q8TC90 406 aaPredicted RBP16.89■□□□□ 0.29
TRIM3-211ENST00000532542 ABCC8Q09428 1581 aa16.89■□□□□ 0.29
TRIM3-211ENST00000532542 ATP1B4Q9UN42 357 aaPredicted RBP16.86■□□□□ 0.29
TRIM3-211ENST00000532542 NCAPD3P42695 1498 aa16.81■□□□□ 0.28
TRIM3-211ENST00000532542 EIF4G1Q04637 1599 aaKnown RBP16.81■□□□□ 0.28
TRIM3-211ENST00000532542 GOLGA3Q08378 1498 aa16.79■□□□□ 0.28
TRIM3-211ENST00000532542 SOGA1O94964 1423 aa16.78■□□□□ 0.28
TRIM3-211ENST00000532542 TNIKQ9UKE5 1360 aa16.76■□□□□ 0.27
TRIM3-211ENST00000532542 CEP164Q9UPV0 1460 aa16.74■□□□□ 0.27
TRIM3-211ENST00000532542 PEG3Q9GZU2 1588 aa16.72■□□□□ 0.27
TRIM3-211ENST00000532542 CEP162Q5TB80 1403 aa16.72■□□□□ 0.27
TRIM3-211ENST00000532542 KIF27Q86VH2 1401 aa16.71■□□□□ 0.27
TRIM3-211ENST00000532542 CADPSQ9ULU8 1353 aa16.68■□□□□ 0.26
TRIM3-211ENST00000532542 HMGXB3Q12766 1538 aa16.67■□□□□ 0.26
TRIM3-211ENST00000532542 CLIP1P30622 1438 aa16.66■□□□□ 0.26
TRIM3-211ENST00000532542 HNRNPUL2Q1KMD3 747 aaKnown RBP16.63■□□□□ 0.25
TRIM3-211ENST00000532542 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.56■□□□□ 0.24
TRIM3-211ENST00000532542 CUX2O14529 1486 aa16.53■□□□□ 0.24
TRIM3-211ENST00000532542 RUSC2Q8N2Y8 1516 aa16.52■□□□□ 0.24
TRIM3-211ENST00000532542 CFTRP13569 1480 aa16.52■□□□□ 0.24
TRIM3-211ENST00000532542 ITGAEP38570 1179 aa16.5■□□□□ 0.23
TRIM3-211ENST00000532542 PDS5BQ9NTI5 1447 aa16.5■□□□□ 0.23
TRIM3-211ENST00000532542 P3H3Q8IVL6 736 aa16.48■□□□□ 0.23
TRIM3-211ENST00000532542 CC2D2AQ9P2K1 1620 aa16.48■□□□□ 0.23
TRIM3-211ENST00000532542 SYNJ1O43426 1573 aa16.46■□□□□ 0.22
TRIM3-211ENST00000532542 FANCD2Q9BXW9 1451 aa16.45■□□□□ 0.22
TRIM3-211ENST00000532542 CARMIL1Q5VZK9 1371 aa16.44■□□□□ 0.22
TRIM3-211ENST00000532542 RAPGEF2Q9Y4G8 1499 aa16.4■□□□□ 0.22
TRIM3-211ENST00000532542 TOP2BQ02880 1626 aa16.39■□□□□ 0.21
TRIM3-211ENST00000532542 FAM50AQ14320 339 aaKnown RBP16.38■□□□□ 0.21
TRIM3-211ENST00000532542 VPS8Q8N3P4 1428 aa16.38■□□□□ 0.21
TRIM3-211ENST00000532542 FBLN2P98095 1184 aa16.37■□□□□ 0.21
TRIM3-211ENST00000532542 FGD5Q6ZNL6 1462 aa16.32■□□□□ 0.2
TRIM3-211ENST00000532542 KIF21BO75037 1637 aa16.31■□□□□ 0.2
TRIM3-211ENST00000532542 ERCC6Q03468 1493 aa16.3■□□□□ 0.2
TRIM3-211ENST00000532542 CUX1P39880 1505 aa16.3■□□□□ 0.2
TRIM3-211ENST00000532542 TDRD9Q8NDG6 1382 aaKnown RBP16.26■□□□□ 0.19
TRIM3-211ENST00000532542 IGF1RP08069 1367 aa16.26■□□□□ 0.19
TRIM3-211ENST00000532542 FHAD1B1AJZ9 1412 aa16.25■□□□□ 0.19
TRIM3-211ENST00000532542 CHMP7Q8WUX9 453 aaPredicted RBP16.22■□□□□ 0.19
TRIM3-211ENST00000532542 ERICH3Q5RHP9 1530 aa16.22■□□□□ 0.19
TRIM3-211ENST00000532542 NESP48681 1621 aa16.22■□□□□ 0.19
TRIM3-211ENST00000532542 CDK11AQ9UQ88 783 aaPredicted RBP16.2■□□□□ 0.18
TRIM3-211ENST00000532542 PRXQ9BXM0 1461 aa16.2■□□□□ 0.18
TRIM3-211ENST00000532542 MTUS2Q5JR59 1369 aa16.18■□□□□ 0.18
TRIM3-211ENST00000532542 BIVM-ERCC5R4GMW8 1640 aa16.18■□□□□ 0.18
TRIM3-211ENST00000532542 RAD54L2Q9Y4B4 1467 aa16.17■□□□□ 0.18
TRIM3-211ENST00000532542 LAMC3Q9Y6N6 1575 aa16.16■□□□□ 0.18
TRIM3-211ENST00000532542 TOPBP1Q92547 1522 aa16.15■□□□□ 0.18
TRIM3-211ENST00000532542 ARID3CA6NKF2 412 aa16.14■□□□□ 0.17
TRIM3-211ENST00000532542 DNMBPQ6XZF7 1577 aa16.14■□□□□ 0.17
TRIM3-211ENST00000532542 CENPBP07199 599 aaPredicted RBP16.13■□□□□ 0.17
TRIM3-211ENST00000532542 POLA1P09884 1462 aaPredicted RBP16.1■□□□□ 0.17
TRIM3-211ENST00000532542 GAPVD1Q14C86 1478 aa16.1■□□□□ 0.17
TRIM3-211ENST00000532542 KANK4Q5T7N3 995 aaPredicted RBP16.09■□□□□ 0.17
TRIM3-211ENST00000532542 DIEXFQ68CQ4 756 aaKnown RBP16.09■□□□□ 0.17
TRIM3-211ENST00000532542 FMN1Q68DA7 1419 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms