RNA–Protein interactions for RNA: ENST00000532088.1

COPB1-208, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 3

Gene COPB1, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-208ENST00000532088 AEBP2Q6ZN18 517 aaPredicted RBP33.5■■■□□ 2.95
COPB1-208ENST00000532088 CHIC1Q5VXU3 224 aa32.88■■■□□ 2.85
COPB1-208ENST00000532088 NISCHQ9Y2I1 1504 aa29.63■■■□□ 2.33
COPB1-208ENST00000532088 PHF23Q9BUL5 403 aaPredicted RBP28.94■■■□□ 2.22
COPB1-208ENST00000532088 SENP3Q9H4L4 574 aaPredicted RBP28.4■■■□□ 2.14
COPB1-208ENST00000532088 PLPPR3Q6T4P5 718 aa26.77■■□□□ 1.88
COPB1-208ENST00000532088 FOXD1Q16676 465 aa26.34■■□□□ 1.81
COPB1-208ENST00000532088 CCDC180Q9P1Z9 1646 aa26.21■■□□□ 1.79
COPB1-208ENST00000532088 PPP6R1Q9UPN7 881 aa25.48■■□□□ 1.67
COPB1-208ENST00000532088 ADRA2BP18089 450 aa25.44■■□□□ 1.66
COPB1-208ENST00000532088 ABCC9O60706 1549 aa25.07■■□□□ 1.6
COPB1-208ENST00000532088 PIAS4Q8N2W9 510 aaPredicted RBP24.84■■□□□ 1.57
COPB1-208ENST00000532088 ZCCHC6Q5VYS8 1495 aaKnown RBP24.79■■□□□ 1.56
COPB1-208ENST00000532088 DCAF1Q9Y4B6 1507 aa24.63■■□□□ 1.53
COPB1-208ENST00000532088 MYO15BQ96JP2 1530 aa24.61■■□□□ 1.53
COPB1-208ENST00000532088 NACADO15069 1562 aa24.53■■□□□ 1.52
COPB1-208ENST00000532088 RB1CC1Q8TDY2 1594 aa24.42■■□□□ 1.5
COPB1-208ENST00000532088 DCAF8L2P0C7V8 631 aa24.4■■□□□ 1.5
COPB1-208ENST00000532088 MSH5O43196 834 aa24.23■■□□□ 1.47
COPB1-208ENST00000532088 SCRIBQ14160 1630 aa23.81■■□□□ 1.4
COPB1-208ENST00000532088 UNC13AQ9UPW8 1703 aa23.81■■□□□ 1.4
COPB1-208ENST00000532088 BICRAQ9NZM4 1560 aa23.63■■□□□ 1.37
COPB1-208ENST00000532088 PPP4R3CPQ6ZMV5 832 aa23.6■■□□□ 1.37
COPB1-208ENST00000532088 SHROOM4Q9ULL8 1493 aa23.57■■□□□ 1.36
COPB1-208ENST00000532088 PABPN1Q86U42 306 aaKnown RBP eCLIP23.46■■□□□ 1.35
COPB1-208ENST00000532088 SCAF1Q9H7N4 1312 aaKnown RBP23.3■■□□□ 1.32
COPB1-208ENST00000532088 KCNA4P22459 653 aa23.21■■□□□ 1.31
COPB1-208ENST00000532088 MAPK8IP2Q13387 824 aaPredicted RBP23.04■■□□□ 1.28
COPB1-208ENST00000532088 NCBP3Q53F19 620 aaKnown RBP23.02■■□□□ 1.28
COPB1-208ENST00000532088 EIF4G1Q04637 1599 aaKnown RBP22.98■■□□□ 1.27
COPB1-208ENST00000532088 CECR2Q9BXF3 1484 aa22.96■■□□□ 1.27
COPB1-208ENST00000532088 BAZ1AQ9NRL2 1556 aaPredicted RBP22.96■■□□□ 1.27
COPB1-208ENST00000532088 CNKSR2Q8WXI2 1034 aa22.91■■□□□ 1.26
COPB1-208ENST00000532088 SMARCA4P51532 1647 aa22.89■■□□□ 1.25
COPB1-208ENST00000532088 POTEDQ86YR6 584 aa22.83■■□□□ 1.25
COPB1-208ENST00000532088 MROH2BQ7Z745 1585 aa22.8■■□□□ 1.24
COPB1-208ENST00000532088 CC2D2AQ9P2K1 1620 aa22.75■■□□□ 1.23
COPB1-208ENST00000532088 PEG3Q9GZU2 1588 aa22.73■■□□□ 1.23
COPB1-208ENST00000532088 RSF1Q96T23 1441 aaPredicted RBP22.72■■□□□ 1.23
COPB1-208ENST00000532088 DMRT2Q9Y5R5 561 aa22.71■■□□□ 1.23
COPB1-208ENST00000532088 SMARCA2P51531 1590 aa22.69■■□□□ 1.22
COPB1-208ENST00000532088 NPM3O75607 178 aaKnown RBP22.69■■□□□ 1.22
COPB1-208ENST00000532088 ATAD2BQ9ULI0 1458 aa22.66■■□□□ 1.22
COPB1-208ENST00000532088 NCAPD3P42695 1498 aa22.62■■□□□ 1.21
COPB1-208ENST00000532088 DNAJC5BQ9UF47 199 aa22.59■■□□□ 1.21
COPB1-208ENST00000532088 HMGXB3Q12766 1538 aa22.56■■□□□ 1.2
COPB1-208ENST00000532088 WIZO95785 1651 aa22.55■■□□□ 1.2
COPB1-208ENST00000532088 BAZ1BQ9UIG0 1483 aaKnown RBP22.48■■□□□ 1.19
COPB1-208ENST00000532088 RNF216Q9NWF9 866 aaPredicted RBP22.44■■□□□ 1.18
COPB1-208ENST00000532088 TOP2AP11388 1531 aaKnown RBP22.41■■□□□ 1.18
COPB1-208ENST00000532088 SUPT5HO00267 1087 aaKnown RBP22.33■■□□□ 1.17
COPB1-208ENST00000532088 HOXD11P31277 338 aaPredicted RBP22.32■■□□□ 1.16
COPB1-208ENST00000532088 SLC4A1APQ9BWU0 796 aaKnown RBP22.13■■□□□ 1.13
COPB1-208ENST00000532088 CCDC88BA6NC98 1476 aa22.1■■□□□ 1.13
COPB1-208ENST00000532088 CADPSQ9ULU8 1353 aa21.96■■□□□ 1.11
COPB1-208ENST00000532088 LAMC3Q9Y6N6 1575 aa21.95■■□□□ 1.11
COPB1-208ENST00000532088 CFTRP13569 1480 aa21.94■■□□□ 1.1
COPB1-208ENST00000532088 NESP48681 1621 aa21.82■■□□□ 1.08
COPB1-208ENST00000532088 PRDM2Q13029 1718 aa21.8■■□□□ 1.08
COPB1-208ENST00000532088 PDS5BQ9NTI5 1447 aa21.78■■□□□ 1.08
COPB1-208ENST00000532088 FANCD2Q9BXW9 1451 aa21.68■■□□□ 1.06
COPB1-208ENST00000532088 EHMT2Q96KQ7 1210 aa21.63■■□□□ 1.05
COPB1-208ENST00000532088 DCAF8L1A6NGE4 600 aa21.62■■□□□ 1.05
COPB1-208ENST00000532088 CEP164Q9UPV0 1460 aa21.62■■□□□ 1.05
COPB1-208ENST00000532088 ERCC6Q03468 1493 aa21.61■■□□□ 1.05
COPB1-208ENST00000532088 KIF21AQ7Z4S6 1674 aa21.6■■□□□ 1.05
COPB1-208ENST00000532088 MRC2Q9UBG0 1479 aa21.51■■□□□ 1.03
COPB1-208ENST00000532088 ABCC8Q09428 1581 aa21.49■■□□□ 1.03
COPB1-208ENST00000532088 THOC2Q8NI27 1593 aaKnown RBP21.48■■□□□ 1.03
COPB1-208ENST00000532088 WDR62O43379 1518 aa21.45■■□□□ 1.02
COPB1-208ENST00000532088 URB2Q14146 1524 aaKnown RBP21.42■■□□□ 1.02
COPB1-208ENST00000532088 DNMBPQ6XZF7 1577 aa21.42■■□□□ 1.02
COPB1-208ENST00000532088 WRNQ14191 1432 aaPredicted RBP eCLIP21.41■■□□□ 1.02
COPB1-208ENST00000532088 SLC4A2P04920 1241 aa21.4■■□□□ 1.02
COPB1-208ENST00000532088 CSRNP3Q8WYN3 585 aa21.39■■□□□ 1.01
COPB1-208ENST00000532088 TOPBP1Q92547 1522 aa21.39■■□□□ 1.01
COPB1-208ENST00000532088 ZBTB22O15209 634 aa21.38■■□□□ 1.01
COPB1-208ENST00000532088 CUX1P39880 1505 aa21.37■■□□□ 1.01
COPB1-208ENST00000532088 BIVM-ERCC5R4GMW8 1640 aa21.34■■□□□ 1.01
COPB1-208ENST00000532088 TOP2BQ02880 1626 aa21.33■■□□□ 1.01
COPB1-208ENST00000532088 FOXD4L1Q9NU39 408 aa21.33■■□□□ 1.01
COPB1-208ENST00000532088 CUX2O14529 1486 aa21.32■■□□□ 1
COPB1-208ENST00000532088 SYNJ1O43426 1573 aa21.3■■□□□ 1
COPB1-208ENST00000532088 POLA1P09884 1462 aaPredicted RBP21.23■□□□□ 0.99
COPB1-208ENST00000532088 FGD5Q6ZNL6 1462 aa21.22■□□□□ 0.99
COPB1-208ENST00000532088 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.2■□□□□ 0.98
COPB1-208ENST00000532088 IFT140Q96RY7 1462 aa21.19■□□□□ 0.98
COPB1-208ENST00000532088 SOGA1O94964 1423 aa21.14■□□□□ 0.98
COPB1-208ENST00000532088 TRIM41Q8WV44 630 aa21.14■□□□□ 0.97
COPB1-208ENST00000532088 TARBP1Q13395 1621 aaKnown RBP21.12■□□□□ 0.97
COPB1-208ENST00000532088 WDR97A6NE52 1622 aa21.1■□□□□ 0.97
COPB1-208ENST00000532088 ABCA10Q8WWZ4 1543 aa21.09■□□□□ 0.97
COPB1-208ENST00000532088 RAD54L2Q9Y4B4 1467 aa21.07■□□□□ 0.96
COPB1-208ENST00000532088 ZNF608Q9ULD9 1512 aaPredicted RBP20.96■□□□□ 0.95
COPB1-208ENST00000532088 MYCNP04198 464 aaPredicted RBP20.96■□□□□ 0.95
COPB1-208ENST00000532088 ABCA5Q8WWZ7 1642 aa20.96■□□□□ 0.95
COPB1-208ENST00000532088 KIF27Q86VH2 1401 aa20.95■□□□□ 0.94
COPB1-208ENST00000532088 EIF4G3O43432 1585 aaKnown RBP20.93■□□□□ 0.94
COPB1-208ENST00000532088 TDRD9Q8NDG6 1382 aaKnown RBP20.92■□□□□ 0.94
COPB1-208ENST00000532088 GAPVD1Q14C86 1478 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms