RNA–Protein interactions for RNA: ENST00000531007.1

CTNND1-228, Transcript of catenin delta 1, humanhuman

TSL 4

Gene CTNND1, Length 848 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-228ENST00000531007 AEBP2Q6ZN18 517 aaPredicted RBP27.49■■□□□ 1.99
CTNND1-228ENST00000531007 CHIC1Q5VXU3 224 aa26.56■■□□□ 1.84
CTNND1-228ENST00000531007 SENP3Q9H4L4 574 aaPredicted RBP23.47■■□□□ 1.35
CTNND1-228ENST00000531007 PHF23Q9BUL5 403 aaPredicted RBP23.27■■□□□ 1.32
CTNND1-228ENST00000531007 NISCHQ9Y2I1 1504 aa22.62■■□□□ 1.21
CTNND1-228ENST00000531007 FOXD1Q16676 465 aa21.76■■□□□ 1.07
CTNND1-228ENST00000531007 PLPPR3Q6T4P5 718 aa21.44■■□□□ 1.02
CTNND1-228ENST00000531007 PPP6R1Q9UPN7 881 aa20.63■□□□□ 0.89
CTNND1-228ENST00000531007 ADRA2BP18089 450 aa20.6■□□□□ 0.89
CTNND1-228ENST00000531007 PIAS4Q8N2W9 510 aaPredicted RBP20.48■□□□□ 0.87
CTNND1-228ENST00000531007 MSH5O43196 834 aa20.29■□□□□ 0.84
CTNND1-228ENST00000531007 CCDC180Q9P1Z9 1646 aa19.89■□□□□ 0.77
CTNND1-228ENST00000531007 POTEDQ86YR6 584 aa19.47■□□□□ 0.71
CTNND1-228ENST00000531007 ZCCHC6Q5VYS8 1495 aaKnown RBP18.97■□□□□ 0.63
CTNND1-228ENST00000531007 SCAF1Q9H7N4 1312 aaKnown RBP18.96■□□□□ 0.63
CTNND1-228ENST00000531007 DCAF1Q9Y4B6 1507 aa18.84■□□□□ 0.61
CTNND1-228ENST00000531007 ABCC9O60706 1549 aa18.82■□□□□ 0.6
CTNND1-228ENST00000531007 PPP4R3CPQ6ZMV5 832 aa18.81■□□□□ 0.6
CTNND1-228ENST00000531007 MAPK8IP2Q13387 824 aaPredicted RBP18.78■□□□□ 0.6
CTNND1-228ENST00000531007 MYO15BQ96JP2 1530 aa18.72■□□□□ 0.59
CTNND1-228ENST00000531007 DMRT2Q9Y5R5 561 aa18.65■□□□□ 0.58
CTNND1-228ENST00000531007 NACADO15069 1562 aa18.56■□□□□ 0.56
CTNND1-228ENST00000531007 DCAF8L2P0C7V8 631 aa18.56■□□□□ 0.56
CTNND1-228ENST00000531007 RB1CC1Q8TDY2 1594 aa18.41■□□□□ 0.54
CTNND1-228ENST00000531007 CNKSR2Q8WXI2 1034 aa18.39■□□□□ 0.53
CTNND1-228ENST00000531007 NCBP3Q53F19 620 aaKnown RBP18.28■□□□□ 0.52
CTNND1-228ENST00000531007 HOXD11P31277 338 aaPredicted RBP18.13■□□□□ 0.49
CTNND1-228ENST00000531007 RNF216Q9NWF9 866 aaPredicted RBP18.12■□□□□ 0.49
CTNND1-228ENST00000531007 SHROOM4Q9ULL8 1493 aa18.1■□□□□ 0.49
CTNND1-228ENST00000531007 SCRIBQ14160 1630 aa18.07■□□□□ 0.48
CTNND1-228ENST00000531007 KCNA4P22459 653 aa17.94■□□□□ 0.46
CTNND1-228ENST00000531007 NPM3O75607 178 aaKnown RBP17.93■□□□□ 0.46
CTNND1-228ENST00000531007 UNC13AQ9UPW8 1703 aa17.89■□□□□ 0.45
CTNND1-228ENST00000531007 DCAF8L1A6NGE4 600 aa17.87■□□□□ 0.45
CTNND1-228ENST00000531007 BICRAQ9NZM4 1560 aa17.74■□□□□ 0.43
CTNND1-228ENST00000531007 PABPN1Q86U42 306 aaKnown RBP eCLIP17.62■□□□□ 0.41
CTNND1-228ENST00000531007 BAZ1AQ9NRL2 1556 aaPredicted RBP17.53■□□□□ 0.4
CTNND1-228ENST00000531007 DNAJC5BQ9UF47 199 aa17.52■□□□□ 0.4
CTNND1-228ENST00000531007 CECR2Q9BXF3 1484 aa17.47■□□□□ 0.39
CTNND1-228ENST00000531007 RSF1Q96T23 1441 aaPredicted RBP17.45■□□□□ 0.38
CTNND1-228ENST00000531007 SMARCA4P51532 1647 aa17.4■□□□□ 0.38
CTNND1-228ENST00000531007 SUPT5HO00267 1087 aaKnown RBP17.4■□□□□ 0.38
CTNND1-228ENST00000531007 MROH2BQ7Z745 1585 aa17.38■□□□□ 0.37
CTNND1-228ENST00000531007 RNF39Q9H2S5 420 aa17.31■□□□□ 0.36
CTNND1-228ENST00000531007 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.3■□□□□ 0.361e-7■□□□□ 8.2
CTNND1-228ENST00000531007 PEG3Q9GZU2 1588 aa17.29■□□□□ 0.36
CTNND1-228ENST00000531007 EIF4G1Q04637 1599 aaKnown RBP17.26■□□□□ 0.35
CTNND1-228ENST00000531007 SMARCA2P51531 1590 aa17.23■□□□□ 0.35
CTNND1-228ENST00000531007 WIZO95785 1651 aa17.21■□□□□ 0.35
CTNND1-228ENST00000531007 CACNB1Q02641 598 aaPredicted RBP17.17■□□□□ 0.34
CTNND1-228ENST00000531007 ATAD2BQ9ULI0 1458 aa17.17■□□□□ 0.34
CTNND1-228ENST00000531007 TOP2AP11388 1531 aaKnown RBP17.14■□□□□ 0.33
CTNND1-228ENST00000531007 C1QBPQ07021 282 aaKnown RBP17.12■□□□□ 0.33
CTNND1-228ENST00000531007 NCAPD3P42695 1498 aa17.11■□□□□ 0.33
CTNND1-228ENST00000531007 HMGXB3Q12766 1538 aa17.08■□□□□ 0.32
CTNND1-228ENST00000531007 BAZ1BQ9UIG0 1483 aaKnown RBP17.06■□□□□ 0.32
CTNND1-228ENST00000531007 SLC4A1APQ9BWU0 796 aaKnown RBP17.06■□□□□ 0.32
CTNND1-228ENST00000531007 CC2D2AQ9P2K1 1620 aa17.02■□□□□ 0.31
CTNND1-228ENST00000531007 SLC4A2P04920 1241 aa17■□□□□ 0.31
CTNND1-228ENST00000531007 U3KPZ7 1027 aaPredicted RBP16.93■□□□□ 0.3
CTNND1-228ENST00000531007 CCDC88BA6NC98 1476 aa16.91■□□□□ 0.3
CTNND1-228ENST00000531007 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.69■□□□□ 0.26
CTNND1-228ENST00000531007 HNRNPUL2Q1KMD3 747 aaKnown RBP16.69■□□□□ 0.26
CTNND1-228ENST00000531007 FOXD4L1Q9NU39 408 aa16.67■□□□□ 0.26
CTNND1-228ENST00000531007 CFTRP13569 1480 aa16.66■□□□□ 0.26
CTNND1-228ENST00000531007 MYCNP04198 464 aaPredicted RBP16.63■□□□□ 0.25
CTNND1-228ENST00000531007 CADPSQ9ULU8 1353 aa16.63■□□□□ 0.25
CTNND1-228ENST00000531007 APLP2Q06481 763 aa16.62■□□□□ 0.25
CTNND1-228ENST00000531007 SAMD1Q6SPF0 538 aaPredicted RBP16.6■□□□□ 0.25
CTNND1-228ENST00000531007 PRDM2Q13029 1718 aa16.57■□□□□ 0.24
CTNND1-228ENST00000531007 LAMC3Q9Y6N6 1575 aa16.55■□□□□ 0.24
CTNND1-228ENST00000531007 CAPN15O75808 1086 aa16.55■□□□□ 0.24
CTNND1-228ENST00000531007 SPINK5Q9NQ38 1064 aaPredicted RBP16.55■□□□□ 0.24
CTNND1-228ENST00000531007 TRIM41Q8WV44 630 aa16.49■□□□□ 0.23
CTNND1-228ENST00000531007 ZBTB22O15209 634 aa16.48■□□□□ 0.23
CTNND1-228ENST00000531007 WRNQ14191 1432 aaPredicted RBP eCLIP16.45■□□□□ 0.22
CTNND1-228ENST00000531007 PDS5BQ9NTI5 1447 aa16.45■□□□□ 0.22
CTNND1-228ENST00000531007 ZNF219Q9P2Y4 722 aaPredicted RBP16.41■□□□□ 0.22
CTNND1-228ENST00000531007 ABCC8Q09428 1581 aa16.41■□□□□ 0.22
CTNND1-228ENST00000531007 FANCD2Q9BXW9 1451 aa16.4■□□□□ 0.22
CTNND1-228ENST00000531007 TRHP20396 242 aaPredicted RBP16.37■□□□□ 0.21
CTNND1-228ENST00000531007 NESP48681 1621 aa16.37■□□□□ 0.21
CTNND1-228ENST00000531007 TOP2BQ02880 1626 aa16.36■□□□□ 0.21
CTNND1-228ENST00000531007 CEP164Q9UPV0 1460 aa16.35■□□□□ 0.21
CTNND1-228ENST00000531007 BIVM-ERCC5R4GMW8 1640 aa16.34■□□□□ 0.21
CTNND1-228ENST00000531007 DSG3P32926 999 aa16.34■□□□□ 0.21
CTNND1-228ENST00000531007 SYNJ1O43426 1573 aa16.31■□□□□ 0.2
CTNND1-228ENST00000531007 CUX1P39880 1505 aa16.28■□□□□ 0.2
CTNND1-228ENST00000531007 EEA1Q15075 1411 aa16.28■□□□□ 0.2
CTNND1-228ENST00000531007 DNMBPQ6XZF7 1577 aa16.26■□□□□ 0.19
CTNND1-228ENST00000531007 ERCC6Q03468 1493 aa16.24■□□□□ 0.19
CTNND1-228ENST00000531007 KIF21AQ7Z4S6 1674 aa16.22■□□□□ 0.19
CTNND1-228ENST00000531007 TOPBP1Q92547 1522 aa16.2■□□□□ 0.18
CTNND1-228ENST00000531007 MRC2Q9UBG0 1479 aa16.19■□□□□ 0.18
CTNND1-228ENST00000531007 ABCB7O75027 752 aa16.18■□□□□ 0.18
CTNND1-228ENST00000531007 URB2Q14146 1524 aaKnown RBP16.16■□□□□ 0.18
CTNND1-228ENST00000531007 FGD5Q6ZNL6 1462 aa16.15■□□□□ 0.18
CTNND1-228ENST00000531007 ATXN8OSP0DMR3 200 aa16.14■□□□□ 0.17
CTNND1-228ENST00000531007 EHMT2Q96KQ7 1210 aa16.13■□□□□ 0.17
CTNND1-228ENST00000531007 ATF5Q9Y2D1 282 aaPredicted RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 149.6 ms