RNA–Protein interactions for RNA: ENST00000529828.5

PTPRC-213, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 2,336 nt, Biotype non stop decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-213ENST00000529828 AEBP2Q6ZN18 517 aaPredicted RBP10.55□□□□□ -0.72
PTPRC-213ENST00000529828 CHIC1Q5VXU3 224 aa10.04□□□□□ -0.8
PTPRC-213ENST00000529828 POTEDQ86YR6 584 aa9.45□□□□□ -0.9
PTPRC-213ENST00000529828 SENP3Q9H4L4 574 aaPredicted RBP9.22□□□□□ -0.93
PTPRC-213ENST00000529828 NISCHQ9Y2I1 1504 aa9□□□□□ -0.97
PTPRC-213ENST00000529828 PHF23Q9BUL5 403 aaPredicted RBP8.97□□□□□ -0.97
PTPRC-213ENST00000529828 FOXD1Q16676 465 aa8.53□□□□□ -1.04
PTPRC-213ENST00000529828 ABCC9O60706 1549 aa8.34□□□□□ -1.08
PTPRC-213ENST00000529828 MSH5O43196 834 aa8.26□□□□□ -1.09
PTPRC-213ENST00000529828 CCDC180Q9P1Z9 1646 aa8.1□□□□□ -1.11
PTPRC-213ENST00000529828 DNAJC5BQ9UF47 199 aa7.94□□□□□ -1.14
PTPRC-213ENST00000529828 PIAS4Q8N2W9 510 aaPredicted RBP7.92□□□□□ -1.14
PTPRC-213ENST00000529828 RB1CC1Q8TDY2 1594 aa7.81□□□□□ -1.16
PTPRC-213ENST00000529828 PABPN1Q86U42 306 aaKnown RBP eCLIP7.75□□□□□ -1.17
PTPRC-213ENST00000529828 DCAF8L2P0C7V8 631 aa7.74□□□□□ -1.17
PTPRC-213ENST00000529828 PLPPR3Q6T4P5 718 aa7.7□□□□□ -1.18
PTPRC-213ENST00000529828 NACADO15069 1562 aa7.7□□□□□ -1.18
PTPRC-213ENST00000529828 UNC13AQ9UPW8 1703 aa7.63□□□□□ -1.19
PTPRC-213ENST00000529828 PPP6R1Q9UPN7 881 aa7.62□□□□□ -1.19
PTPRC-213ENST00000529828 ADRA2BP18089 450 aa7.61□□□□□ -1.19
PTPRC-213ENST00000529828 BICRAQ9NZM4 1560 aa7.6□□□□□ -1.19
PTPRC-213ENST00000529828 MYO15BQ96JP2 1530 aa7.51□□□□□ -1.21
PTPRC-213ENST00000529828 CECR2Q9BXF3 1484 aa7.5□□□□□ -1.21
PTPRC-213ENST00000529828 CC2D2AQ9P2K1 1620 aa7.49□□□□□ -1.21
PTPRC-213ENST00000529828 SCRIBQ14160 1630 aa7.46□□□□□ -1.22
PTPRC-213ENST00000529828 ZCCHC6Q5VYS8 1495 aaKnown RBP7.44□□□□□ -1.22
PTPRC-213ENST00000529828 EIF4G1Q04637 1599 aaKnown RBP7.43□□□□□ -1.22
PTPRC-213ENST00000529828 SHROOM4Q9ULL8 1493 aa7.42□□□□□ -1.22
PTPRC-213ENST00000529828 DCAF1Q9Y4B6 1507 aa7.38□□□□□ -1.23
PTPRC-213ENST00000529828 DNAJC5Q9H3Z4 198 aa7.35□□□□□ -1.23
PTPRC-213ENST00000529828 CACNB1Q02641 598 aaPredicted RBP7.24□□□□□ -1.25
PTPRC-213ENST00000529828 DMRT2Q9Y5R5 561 aa7.23□□□□□ -1.25
PTPRC-213ENST00000529828 ERCC6Q03468 1493 aa7.19□□□□□ -1.26
PTPRC-213ENST00000529828 CUX2O14529 1486 aa7.18□□□□□ -1.26
PTPRC-213ENST00000529828 SCAF1Q9H7N4 1312 aaKnown RBP7.16□□□□□ -1.26
PTPRC-213ENST00000529828 NESP48681 1621 aa7.12□□□□□ -1.27
PTPRC-213ENST00000529828 NCAPD3P42695 1498 aa7.12□□□□□ -1.27
PTPRC-213ENST00000529828 ATAD2BQ9ULI0 1458 aa7.11□□□□□ -1.27
PTPRC-213ENST00000529828 MAPK8IP2Q13387 824 aaPredicted RBP7.06□□□□□ -1.28
PTPRC-213ENST00000529828 SMARCA4P51532 1647 aa7.06□□□□□ -1.28
PTPRC-213ENST00000529828 HMGXB3Q12766 1538 aa7.06□□□□□ -1.28
PTPRC-213ENST00000529828 SMARCA2P51531 1590 aa7.05□□□□□ -1.28
PTPRC-213ENST00000529828 TRIM41Q8WV44 630 aa7.05□□□□□ -1.28
PTPRC-213ENST00000529828 THOC2Q8NI27 1593 aaKnown RBP7.04□□□□□ -1.28
PTPRC-213ENST00000529828 BAZ1BQ9UIG0 1483 aaKnown RBP7.04□□□□□ -1.28
PTPRC-213ENST00000529828 KIF21AQ7Z4S6 1674 aa6.99□□□□□ -1.29
PTPRC-213ENST00000529828 BAZ1AQ9NRL2 1556 aaPredicted RBP6.99□□□□□ -1.29
PTPRC-213ENST00000529828 LAMC3Q9Y6N6 1575 aa6.98□□□□□ -1.29
PTPRC-213ENST00000529828 POTEHQ6S545 545 aa6.97□□□□□ -1.29
PTPRC-213ENST00000529828 MROH2BQ7Z745 1585 aa6.97□□□□□ -1.29
PTPRC-213ENST00000529828 PDS5BQ9NTI5 1447 aa6.96□□□□□ -1.3
PTPRC-213ENST00000529828 PEG3Q9GZU2 1588 aa6.96□□□□□ -1.3
PTPRC-213ENST00000529828 RNF39Q9H2S5 420 aa6.93□□□□□ -1.3
PTPRC-213ENST00000529828 MRC2Q9UBG0 1479 aa6.93□□□□□ -1.3
PTPRC-213ENST00000529828 CADPSQ9ULU8 1353 aa6.92□□□□□ -1.3
PTPRC-213ENST00000529828 DCAF8L1A6NGE4 600 aa6.92□□□□□ -1.3
PTPRC-213ENST00000529828 WDR62O43379 1518 aa6.9□□□□□ -1.3
PTPRC-213ENST00000529828 C1QBPQ07021 282 aaKnown RBP6.88□□□□□ -1.31
PTPRC-213ENST00000529828 CEP164Q9UPV0 1460 aa6.87□□□□□ -1.31
PTPRC-213ENST00000529828 WIZO95785 1651 aa6.87□□□□□ -1.31
PTPRC-213ENST00000529828 FANCD2Q9BXW9 1451 aa6.85□□□□□ -1.31
PTPRC-213ENST00000529828 OSCARQ8IYS5 282 aa6.84□□□□□ -1.31
PTPRC-213ENST00000529828 PLSCR2Q9NRY7 297 aa6.84□□□□□ -1.31
PTPRC-213ENST00000529828 HOXD11P31277 338 aaPredicted RBP6.82□□□□□ -1.32
PTPRC-213ENST00000529828 URB2Q14146 1524 aaKnown RBP6.82□□□□□ -1.32
PTPRC-213ENST00000529828 CFTRP13569 1480 aa6.8□□□□□ -1.32
PTPRC-213ENST00000529828 RIMBP3CA6NJZ7 1639 aa6.79□□□□□ -1.32
PTPRC-213ENST00000529828 RIMBP3BA6NNM3 1639 aa6.79□□□□□ -1.32
PTPRC-213ENST00000529828 RIMBP3Q9UFD9 1639 aa6.79□□□□□ -1.32
PTPRC-213ENST00000529828 ZNF608Q9ULD9 1512 aaPredicted RBP6.77□□□□□ -1.33
PTPRC-213ENST00000529828 TOP2AP11388 1531 aaKnown RBP6.76□□□□□ -1.33
PTPRC-213ENST00000529828 RSF1Q96T23 1441 aaPredicted RBP6.76□□□□□ -1.33
PTPRC-213ENST00000529828 ARHGEF11O15085 1522 aa6.75□□□□□ -1.33
PTPRC-213ENST00000529828 CYB5RLQ6IPT4 315 aa6.73□□□□□ -1.33
PTPRC-213ENST00000529828 IFT140Q96RY7 1462 aa6.73□□□□□ -1.33
PTPRC-213ENST00000529828 TRHP20396 242 aaPredicted RBP6.71□□□□□ -1.33
PTPRC-213ENST00000529828 EIF4G3O43432 1585 aaKnown RBP6.71□□□□□ -1.34
PTPRC-213ENST00000529828 TOPBP1Q92547 1522 aa6.7□□□□□ -1.34
PTPRC-213ENST00000529828 FBLN2P98095 1184 aa6.7□□□□□ -1.34
PTPRC-213ENST00000529828 RNF216Q9NWF9 866 aaPredicted RBP6.7□□□□□ -1.34
PTPRC-213ENST00000529828 CCDC88BA6NC98 1476 aa6.69□□□□□ -1.34
PTPRC-213ENST00000529828 AQRO60306 1485 aaKnown RBP eCLIP6.69□□□□□ -1.345e-7■■■■■ 27.7
PTPRC-213ENST00000529828 ARAP1Q96P48 1450 aa6.69□□□□□ -1.34
PTPRC-213ENST00000529828 PRDM2Q13029 1718 aa6.69□□□□□ -1.34
PTPRC-213ENST00000529828 CHD1O14646 1710 aa6.67□□□□□ -1.34
PTPRC-213ENST00000529828 CNKSR2Q8WXI2 1034 aa6.67□□□□□ -1.34
PTPRC-213ENST00000529828 DNMBPQ6XZF7 1577 aa6.65□□□□□ -1.34
PTPRC-213ENST00000529828 PPP4R3CPQ6ZMV5 832 aa6.65□□□□□ -1.34
PTPRC-213ENST00000529828 TARBP1Q13395 1621 aaKnown RBP6.64□□□□□ -1.35
PTPRC-213ENST00000529828 POLA1P09884 1462 aaPredicted RBP6.64□□□□□ -1.35
PTPRC-213ENST00000529828 RAD54L2Q9Y4B4 1467 aa6.64□□□□□ -1.35
PTPRC-213ENST00000529828 ABCC8Q09428 1581 aa6.63□□□□□ -1.35
PTPRC-213ENST00000529828 TDRD9Q8NDG6 1382 aaKnown RBP6.63□□□□□ -1.35
PTPRC-213ENST00000529828 SNAPC4Q5SXM2 1469 aa6.61□□□□□ -1.35
PTPRC-213ENST00000529828 SOGA1O94964 1423 aa6.59□□□□□ -1.35
PTPRC-213ENST00000529828 CLASP1Q7Z460 1538 aa6.59□□□□□ -1.35
PTPRC-213ENST00000529828 CHMP7Q8WUX9 453 aaPredicted RBP6.59□□□□□ -1.36
PTPRC-213ENST00000529828 FGD5Q6ZNL6 1462 aa6.58□□□□□ -1.36
PTPRC-213ENST00000529828 SYNJ1O43426 1573 aa6.57□□□□□ -1.36
PTPRC-213ENST00000529828 CUX1P39880 1505 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms