RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 DNAJC5Q9H3Z4 198 aa8.18□□□□□ -1.1
MCF2-208ENST00000519895 DNAJC5BQ9UF47 199 aa7.77□□□□□ -1.17
MCF2-208ENST00000519895 AEBP2Q6ZN18 517 aaPredicted RBP7.75□□□□□ -1.17
MCF2-208ENST00000519895 CHIC1Q5VXU3 224 aa7.59□□□□□ -1.19
MCF2-208ENST00000519895 ABCC9O60706 1549 aa7.33□□□□□ -1.24
MCF2-208ENST00000519895 CUX2O14529 1486 aa7.18□□□□□ -1.26
MCF2-208ENST00000519895 NISCHQ9Y2I1 1504 aa7.09□□□□□ -1.27
MCF2-208ENST00000519895 POTEDQ86YR6 584 aa7.08□□□□□ -1.28
MCF2-208ENST00000519895 SENP3Q9H4L4 574 aaPredicted RBP7.04□□□□□ -1.28
MCF2-208ENST00000519895 ILDR1Q86SU0 546 aaPredicted RBP7.03□□□□□ -1.28
MCF2-208ENST00000519895 TRIM41Q8WV44 630 aa6.99□□□□□ -1.29
MCF2-208ENST00000519895 CECR2Q9BXF3 1484 aa6.87□□□□□ -1.31
MCF2-208ENST00000519895 RB1CC1Q8TDY2 1594 aa6.87□□□□□ -1.31
MCF2-208ENST00000519895 CCDC180Q9P1Z9 1646 aa6.82□□□□□ -1.32
MCF2-208ENST00000519895 SHROOM4Q9ULL8 1493 aa6.81□□□□□ -1.32
MCF2-208ENST00000519895 CC2D2AQ9P2K1 1620 aa6.78□□□□□ -1.32
MCF2-208ENST00000519895 SOCS7O14512 581 aa6.76□□□□□ -1.33
MCF2-208ENST00000519895 PABPN1Q86U42 306 aaKnown RBP eCLIP6.74□□□□□ -1.33
MCF2-208ENST00000519895 PHF23Q9BUL5 403 aaPredicted RBP6.68□□□□□ -1.34
MCF2-208ENST00000519895 LMTK3Q96Q04 1460 aa6.66□□□□□ -1.34
MCF2-208ENST00000519895 UNC13AQ9UPW8 1703 aa6.65□□□□□ -1.35
MCF2-208ENST00000519895 ERCC6L2Q5T890 1561 aa6.63□□□□□ -1.35
MCF2-208ENST00000519895 BICRAQ9NZM4 1560 aa6.62□□□□□ -1.35
MCF2-208ENST00000519895 NACADO15069 1562 aa6.61□□□□□ -1.35
MCF2-208ENST00000519895 FBXO41Q8TF61 875 aa6.57□□□□□ -1.36
MCF2-208ENST00000519895 EIF4G1Q04637 1599 aaKnown RBP6.53□□□□□ -1.36
MCF2-208ENST00000519895 RIMBP3CA6NJZ7 1639 aa6.52□□□□□ -1.37
MCF2-208ENST00000519895 RIMBP3BA6NNM3 1639 aa6.52□□□□□ -1.37
MCF2-208ENST00000519895 RIMBP3Q9UFD9 1639 aa6.52□□□□□ -1.37
MCF2-208ENST00000519895 MSH5O43196 834 aa6.52□□□□□ -1.37
MCF2-208ENST00000519895 ERCC6Q03468 1493 aa6.49□□□□□ -1.37
MCF2-208ENST00000519895 THOC2Q8NI27 1593 aaKnown RBP6.45□□□□□ -1.38
MCF2-208ENST00000519895 BAZ1AQ9NRL2 1556 aaPredicted RBP6.44□□□□□ -1.38
MCF2-208ENST00000519895 FOXD1Q16676 465 aa6.4□□□□□ -1.39
MCF2-208ENST00000519895 ILDR2Q71H61 639 aa6.37□□□□□ -1.39
MCF2-208ENST00000519895 OSCARQ8IYS5 282 aa6.37□□□□□ -1.39
MCF2-208ENST00000519895 ARHGEF11O15085 1522 aa6.35□□□□□ -1.39
MCF2-208ENST00000519895 MYO15BQ96JP2 1530 aa6.34□□□□□ -1.39
MCF2-208ENST00000519895 TRHP20396 242 aaPredicted RBP6.33□□□□□ -1.4
MCF2-208ENST00000519895 SPATA31D1Q6ZQQ2 1576 aa6.3□□□□□ -1.4
MCF2-208ENST00000519895 DISP3Q9P2K9 1392 aa6.27□□□□□ -1.41
MCF2-208ENST00000519895 HECW2Q9P2P5 1572 aa6.26□□□□□ -1.41
MCF2-208ENST00000519895 ARAP1Q96P48 1450 aa6.19□□□□□ -1.42
MCF2-208ENST00000519895 KDM4FA0A1W2PPD8 638 aa6.17□□□□□ -1.42
MCF2-208ENST00000519895 RSF1Q96T23 1441 aaPredicted RBP6.16□□□□□ -1.42
MCF2-208ENST00000519895 WDR62O43379 1518 aa6.13□□□□□ -1.43
MCF2-208ENST00000519895 LAMC3Q9Y6N6 1575 aa6.13□□□□□ -1.43
MCF2-208ENST00000519895 SYNJ2O15056 1496 aa6.11□□□□□ -1.43
MCF2-208ENST00000519895 KDM6BO15054 1643 aa6.08□□□□□ -1.44
MCF2-208ENST00000519895 CYB5RLQ6IPT4 315 aa6.07□□□□□ -1.44
MCF2-208ENST00000519895 KIF21AQ7Z4S6 1674 aa6.06□□□□□ -1.44
MCF2-208ENST00000519895 DCAF1Q9Y4B6 1507 aa6.04□□□□□ -1.44
MCF2-208ENST00000519895 NCAPD3P42695 1498 aa6.04□□□□□ -1.44
MCF2-208ENST00000519895 MRC2Q9UBG0 1479 aa6.04□□□□□ -1.44
MCF2-208ENST00000519895 IFFO2Q5TF58 517 aa6.02□□□□□ -1.45
MCF2-208ENST00000519895 PDS5BQ9NTI5 1447 aa6.01□□□□□ -1.45
MCF2-208ENST00000519895 SMARCA2P51531 1590 aa6.01□□□□□ -1.45
MCF2-208ENST00000519895 KIF13AQ9H1H9 1805 aa5.99□□□□□ -1.45
MCF2-208ENST00000519895 HMGXB3Q12766 1538 aa5.98□□□□□ -1.45
MCF2-208ENST00000519895 NESP48681 1621 aa5.97□□□□□ -1.45
MCF2-208ENST00000519895 ADGRL1O94910 1474 aa5.97□□□□□ -1.45
MCF2-208ENST00000519895 TOP2BQ02880 1626 aa5.94□□□□□ -1.46
MCF2-208ENST00000519895 ZCCHC6Q5VYS8 1495 aaKnown RBP5.9□□□□□ -1.46
MCF2-208ENST00000519895 IQSEC2Q5JU85 1478 aa5.9□□□□□ -1.46
MCF2-208ENST00000519895 PCDH10Q9P2E7 1040 aa5.89□□□□□ -1.47
MCF2-208ENST00000519895 CERKQ8TCT0 537 aa5.88□□□□□ -1.47
MCF2-208ENST00000519895 CLASP1Q7Z460 1538 aa5.86□□□□□ -1.47
MCF2-208ENST00000519895 CHD1O14646 1710 aa5.85□□□□□ -1.47
MCF2-208ENST00000519895 PIAS4Q8N2W9 510 aaPredicted RBP5.84□□□□□ -1.47
MCF2-208ENST00000519895 SCRIBQ14160 1630 aa5.82□□□□□ -1.48
MCF2-208ENST00000519895 MED1Q15648 1581 aaPredicted RBP5.78□□□□□ -1.48
MCF2-208ENST00000519895 ABCC10Q5T3U5 1492 aa5.77□□□□□ -1.49
MCF2-208ENST00000519895 PCF11O94913 1555 aaKnown RBP5.76□□□□□ -1.49
MCF2-208ENST00000519895 SLC34A2O95436 690 aa5.76□□□□□ -1.49
MCF2-208ENST00000519895 SNAPC4Q5SXM2 1469 aa5.76□□□□□ -1.49
MCF2-208ENST00000519895 LTBP4Q8N2S1 1624 aa5.75□□□□□ -1.49
MCF2-208ENST00000519895 ATAD2BQ9ULI0 1458 aa5.75□□□□□ -1.49
MCF2-208ENST00000519895 IFT140Q96RY7 1462 aa5.74□□□□□ -1.49
MCF2-208ENST00000519895 CACNB1Q02641 598 aaPredicted RBP5.74□□□□□ -1.49
MCF2-208ENST00000519895 MAPKBP1O60336 1514 aa5.74□□□□□ -1.49
MCF2-208ENST00000519895 SYNJ1O43426 1573 aa5.74□□□□□ -1.49
MCF2-208ENST00000519895 CEP164Q9UPV0 1460 aa5.73□□□□□ -1.49
MCF2-208ENST00000519895 DIP2BQ9P265 1576 aa5.73□□□□□ -1.49
MCF2-208ENST00000519895 GAPVD1Q14C86 1478 aa5.73□□□□□ -1.49
MCF2-208ENST00000519895 WDR97A6NE52 1622 aa5.68□□□□□ -1.5
MCF2-208ENST00000519895 EIF4G3O43432 1585 aaKnown RBP5.68□□□□□ -1.5
MCF2-208ENST00000519895 CADPSQ9ULU8 1353 aa5.68□□□□□ -1.5
MCF2-208ENST00000519895 SMARCA4P51532 1647 aa5.68□□□□□ -1.5
MCF2-208ENST00000519895 PEG3Q9GZU2 1588 aa5.66□□□□□ -1.5
MCF2-208ENST00000519895 ADAMTSL3P82987 1691 aa5.63□□□□□ -1.51
MCF2-208ENST00000519895 ZNF608Q9ULD9 1512 aaPredicted RBP5.61□□□□□ -1.51
MCF2-208ENST00000519895 PTPRTO14522 1441 aa5.61□□□□□ -1.51
MCF2-208ENST00000519895 URB2Q14146 1524 aaKnown RBP5.6□□□□□ -1.51
MCF2-208ENST00000519895 GLI2P10070 1586 aa5.6□□□□□ -1.51
MCF2-208ENST00000519895 BAZ1BQ9UIG0 1483 aaKnown RBP5.6□□□□□ -1.51
MCF2-208ENST00000519895 PPRC1Q5VV67 1664 aaKnown RBP5.6□□□□□ -1.51
MCF2-208ENST00000519895 PTPRMP28827 1452 aa5.59□□□□□ -1.51
MCF2-208ENST00000519895 FANCD2Q9BXW9 1451 aa5.58□□□□□ -1.52
MCF2-208ENST00000519895 DMRT2Q9Y5R5 561 aa5.56□□□□□ -1.52
MCF2-208ENST00000519895 FAM69CQ0P6D2 419 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms