RNA–Protein interactions for RNA: ENST00000519848.1

PABPC1-213, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 2

Gene PABPC1, Length 676 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-213ENST00000519848 AEBP2Q6ZN18 517 aaPredicted RBP27.12■■□□□ 1.93
PABPC1-213ENST00000519848 CHIC1Q5VXU3 224 aa25.2■■□□□ 1.62
PABPC1-213ENST00000519848 SENP3Q9H4L4 574 aaPredicted RBP23.13■■□□□ 1.29
PABPC1-213ENST00000519848 PHF23Q9BUL5 403 aaPredicted RBP22.77■■□□□ 1.24
PABPC1-213ENST00000519848 NISCHQ9Y2I1 1504 aa22.08■■□□□ 1.13
PABPC1-213ENST00000519848 FOXD1Q16676 465 aa21.72■■□□□ 1.07
PABPC1-213ENST00000519848 POTEDQ86YR6 584 aa21.31■■□□□ 1
PABPC1-213ENST00000519848 MSH5O43196 834 aa20.51■□□□□ 0.87
PABPC1-213ENST00000519848 PIAS4Q8N2W9 510 aaPredicted RBP20.07■□□□□ 0.8
PABPC1-213ENST00000519848 PPP6R1Q9UPN7 881 aa19.81■□□□□ 0.76
PABPC1-213ENST00000519848 CCDC180Q9P1Z9 1646 aa19.8■□□□□ 0.76
PABPC1-213ENST00000519848 ABCC9O60706 1549 aa19.73■□□□□ 0.75
PABPC1-213ENST00000519848 ADRA2BP18089 450 aa19.66■□□□□ 0.74
PABPC1-213ENST00000519848 PLPPR3Q6T4P5 718 aa19.6■□□□□ 0.73
PABPC1-213ENST00000519848 RB1CC1Q8TDY2 1594 aa18.72■□□□□ 0.59
PABPC1-213ENST00000519848 NACADO15069 1562 aa18.6■□□□□ 0.57
PABPC1-213ENST00000519848 UNC13AQ9UPW8 1703 aa18.55■□□□□ 0.56
PABPC1-213ENST00000519848 DNAJC5BQ9UF47 199 aa18.51■□□□□ 0.55
PABPC1-213ENST00000519848 BICRAQ9NZM4 1560 aa18.39■□□□□ 0.53
PABPC1-213ENST00000519848 ZCCHC6Q5VYS8 1495 aaKnown RBP18.38■□□□□ 0.53
PABPC1-213ENST00000519848 MYO15BQ96JP2 1530 aa18.38■□□□□ 0.53
PABPC1-213ENST00000519848 DCAF8L2P0C7V8 631 aa18.37■□□□□ 0.53
PABPC1-213ENST00000519848 PABPN1Q86U42 306 aaKnown RBP eCLIP18.33■□□□□ 0.52
PABPC1-213ENST00000519848 MAPK8IP2Q13387 824 aaPredicted RBP18.3■□□□□ 0.52
PABPC1-213ENST00000519848 DMRT2Q9Y5R5 561 aa18.26■□□□□ 0.51
PABPC1-213ENST00000519848 DCAF1Q9Y4B6 1507 aa18.19■□□□□ 0.5
PABPC1-213ENST00000519848 SCRIBQ14160 1630 aa18.11■□□□□ 0.49
PABPC1-213ENST00000519848 CACNB1Q02641 598 aaPredicted RBP18.05■□□□□ 0.48
PABPC1-213ENST00000519848 SHROOM4Q9ULL8 1493 aa17.89■□□□□ 0.45
PABPC1-213ENST00000519848 SCAF1Q9H7N4 1312 aaKnown RBP17.87■□□□□ 0.45
PABPC1-213ENST00000519848 CC2D2AQ9P2K1 1620 aa17.85■□□□□ 0.45
PABPC1-213ENST00000519848 EIF4G1Q04637 1599 aaKnown RBP17.82■□□□□ 0.44
PABPC1-213ENST00000519848 CECR2Q9BXF3 1484 aa17.7■□□□□ 0.42
PABPC1-213ENST00000519848 DCAF8L1A6NGE4 600 aa17.49■□□□□ 0.39
PABPC1-213ENST00000519848 RNF39Q9H2S5 420 aa17.49■□□□□ 0.39
PABPC1-213ENST00000519848 HOXD11P31277 338 aaPredicted RBP17.33■□□□□ 0.36
PABPC1-213ENST00000519848 SMARCA4P51532 1647 aa17.26■□□□□ 0.35
PABPC1-213ENST00000519848 ATAD2BQ9ULI0 1458 aa17.2■□□□□ 0.34
PABPC1-213ENST00000519848 NCAPD3P42695 1498 aa17.19■□□□□ 0.34
PABPC1-213ENST00000519848 C1QBPQ07021 282 aaKnown RBP17.15■□□□□ 0.34
PABPC1-213ENST00000519848 PPP4R3CPQ6ZMV5 832 aa17.12■□□□□ 0.33
PABPC1-213ENST00000519848 HMGXB3Q12766 1538 aa17.11■□□□□ 0.33
PABPC1-213ENST00000519848 MROH2BQ7Z745 1585 aa17.11■□□□□ 0.33
PABPC1-213ENST00000519848 BAZ1AQ9NRL2 1556 aaPredicted RBP17.08■□□□□ 0.32
PABPC1-213ENST00000519848 SMARCA2P51531 1590 aa17.07■□□□□ 0.32
PABPC1-213ENST00000519848 PEG3Q9GZU2 1588 aa17.07■□□□□ 0.32
PABPC1-213ENST00000519848 NESP48681 1621 aa17.06■□□□□ 0.32
PABPC1-213ENST00000519848 BAZ1BQ9UIG0 1483 aaKnown RBP16.99■□□□□ 0.31
PABPC1-213ENST00000519848 RNF216Q9NWF9 866 aaPredicted RBP16.97■□□□□ 0.31
PABPC1-213ENST00000519848 CNKSR2Q8WXI2 1034 aa16.94■□□□□ 0.3
PABPC1-213ENST00000519848 WIZO95785 1651 aa16.92■□□□□ 0.3
PABPC1-213ENST00000519848 THOC2Q8NI27 1593 aaKnown RBP16.89■□□□□ 0.29
PABPC1-213ENST00000519848 ERCC6Q03468 1493 aa16.88■□□□□ 0.29
PABPC1-213ENST00000519848 CUX2O14529 1486 aa16.86■□□□□ 0.29
PABPC1-213ENST00000519848 KIF21AQ7Z4S6 1674 aa16.85■□□□□ 0.29
PABPC1-213ENST00000519848 LAMC3Q9Y6N6 1575 aa16.8■□□□□ 0.28
PABPC1-213ENST00000519848 DNAJC5Q9H3Z4 198 aa16.73■□□□□ 0.27
PABPC1-213ENST00000519848 RSF1Q96T23 1441 aaPredicted RBP16.7■□□□□ 0.26
PABPC1-213ENST00000519848 TOP2AP11388 1531 aaKnown RBP16.63■□□□□ 0.25
PABPC1-213ENST00000519848 CADPSQ9ULU8 1353 aa16.63■□□□□ 0.25
PABPC1-213ENST00000519848 WDR62O43379 1518 aa16.59■□□□□ 0.25
PABPC1-213ENST00000519848 PDS5BQ9NTI5 1447 aa16.57■□□□□ 0.24
PABPC1-213ENST00000519848 MRC2Q9UBG0 1479 aa16.56■□□□□ 0.24
PABPC1-213ENST00000519848 POTEHQ6S545 545 aa16.53■□□□□ 0.24
PABPC1-213ENST00000519848 CFTRP13569 1480 aa16.53■□□□□ 0.24
PABPC1-213ENST00000519848 FANCD2Q9BXW9 1451 aa16.5■□□□□ 0.23
PABPC1-213ENST00000519848 CEP164Q9UPV0 1460 aa16.48■□□□□ 0.23
PABPC1-213ENST00000519848 URB2Q14146 1524 aaKnown RBP16.48■□□□□ 0.23
PABPC1-213ENST00000519848 PRDM2Q13029 1718 aa16.45■□□□□ 0.22
PABPC1-213ENST00000519848 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.44■□□□□ 0.22
PABPC1-213ENST00000519848 CCDC88BA6NC98 1476 aa16.42■□□□□ 0.22
PABPC1-213ENST00000519848 ZNF608Q9ULD9 1512 aaPredicted RBP16.26■□□□□ 0.19
PABPC1-213ENST00000519848 TOPBP1Q92547 1522 aa16.24■□□□□ 0.19
PABPC1-213ENST00000519848 EIF4G3O43432 1585 aaKnown RBP16.17■□□□□ 0.18
PABPC1-213ENST00000519848 DNMBPQ6XZF7 1577 aa16.17■□□□□ 0.18
PABPC1-213ENST00000519848 NCBP3Q53F19 620 aaKnown RBP16.17■□□□□ 0.18
PABPC1-213ENST00000519848 TARBP1Q13395 1621 aaKnown RBP16.16■□□□□ 0.18
PABPC1-213ENST00000519848 DSG3P32926 999 aa16.15■□□□□ 0.18
PABPC1-213ENST00000519848 IFT140Q96RY7 1462 aa16.13■□□□□ 0.17
PABPC1-213ENST00000519848 POLA1P09884 1462 aaPredicted RBP16.1■□□□□ 0.17
PABPC1-213ENST00000519848 U3KPZ7 1027 aaPredicted RBP16.09■□□□□ 0.17
PABPC1-213ENST00000519848 SPINK5Q9NQ38 1064 aaPredicted RBP16.08■□□□□ 0.16
PABPC1-213ENST00000519848 CHD1O14646 1710 aa16.06■□□□□ 0.16
PABPC1-213ENST00000519848 CUX1P39880 1505 aa16.06■□□□□ 0.16
PABPC1-213ENST00000519848 RAD54L2Q9Y4B4 1467 aa16.06■□□□□ 0.16
PABPC1-213ENST00000519848 RIMBP3CA6NJZ7 1639 aa16.04■□□□□ 0.16
PABPC1-213ENST00000519848 RIMBP3BA6NNM3 1639 aa16.04■□□□□ 0.16
PABPC1-213ENST00000519848 RIMBP3Q9UFD9 1639 aa16.04■□□□□ 0.16
PABPC1-213ENST00000519848 AQRO60306 1485 aaKnown RBP eCLIP16.03■□□□□ 0.161e-6■■■□□ 16
PABPC1-213ENST00000519848 NPM3O75607 178 aaKnown RBP16.03■□□□□ 0.16
PABPC1-213ENST00000519848 TRIM41Q8WV44 630 aa16.02■□□□□ 0.16
PABPC1-213ENST00000519848 WDR97A6NE52 1622 aa16.01■□□□□ 0.15
PABPC1-213ENST00000519848 CAPN15O75808 1086 aa16.01■□□□□ 0.15
PABPC1-213ENST00000519848 ABCC8Q09428 1581 aa16■□□□□ 0.15
PABPC1-213ENST00000519848 FGD5Q6ZNL6 1462 aa16■□□□□ 0.15
PABPC1-213ENST00000519848 OSCARQ8IYS5 282 aa15.97■□□□□ 0.15
PABPC1-213ENST00000519848 ARHGEF11O15085 1522 aa15.94■□□□□ 0.14
PABPC1-213ENST00000519848 TDRD9Q8NDG6 1382 aaKnown RBP15.92■□□□□ 0.14
PABPC1-213ENST00000519848 SOGA1O94964 1423 aa15.9■□□□□ 0.14
PABPC1-213ENST00000519848 SNAPC4Q5SXM2 1469 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms