RNA–Protein interactions for RNA: ENST00000514778.1

SMAD1-213, Transcript of SMAD family member 1, humanhuman

TSL 4

Gene SMAD1, Length 616 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-213ENST00000514778 AEBP2Q6ZN18 517 aaPredicted RBP20.06■□□□□ 0.8
SMAD1-213ENST00000514778 CHIC1Q5VXU3 224 aa19.19■□□□□ 0.66
SMAD1-213ENST00000514778 SENP3Q9H4L4 574 aaPredicted RBP17.16■□□□□ 0.34
SMAD1-213ENST00000514778 NISCHQ9Y2I1 1504 aa16.95■□□□□ 0.3
SMAD1-213ENST00000514778 PHF23Q9BUL5 403 aaPredicted RBP16.91■□□□□ 0.3
SMAD1-213ENST00000514778 FOXD1Q16676 465 aa15.94■□□□□ 0.14
SMAD1-213ENST00000514778 PLPPR3Q6T4P5 718 aa15.41■□□□□ 0.06
SMAD1-213ENST00000514778 CCDC180Q9P1Z9 1646 aa15.03■□□□□ -0
SMAD1-213ENST00000514778 PPP6R1Q9UPN7 881 aa14.95□□□□□ -0.02
SMAD1-213ENST00000514778 MSH5O43196 834 aa14.93□□□□□ -0.02
SMAD1-213ENST00000514778 PIAS4Q8N2W9 510 aaPredicted RBP14.93□□□□□ -0.02
SMAD1-213ENST00000514778 ADRA2BP18089 450 aa14.91□□□□□ -0.02
SMAD1-213ENST00000514778 POTEDQ86YR6 584 aa14.62□□□□□ -0.07
SMAD1-213ENST00000514778 ABCC9O60706 1549 aa14.46□□□□□ -0.09
SMAD1-213ENST00000514778 ZCCHC6Q5VYS8 1495 aaKnown RBP14.14□□□□□ -0.15
SMAD1-213ENST00000514778 MYO15BQ96JP2 1530 aa14.14□□□□□ -0.15
SMAD1-213ENST00000514778 NACADO15069 1562 aa14.12□□□□□ -0.15
SMAD1-213ENST00000514778 DCAF1Q9Y4B6 1507 aa14.11□□□□□ -0.15
SMAD1-213ENST00000514778 RB1CC1Q8TDY2 1594 aa14.07□□□□□ -0.16
SMAD1-213ENST00000514778 DCAF8L2P0C7V8 631 aa14.01□□□□□ -0.17
SMAD1-213ENST00000514778 SCAF1Q9H7N4 1312 aaKnown RBP13.74□□□□□ -0.21
SMAD1-213ENST00000514778 MAPK8IP2Q13387 824 aaPredicted RBP13.65□□□□□ -0.22
SMAD1-213ENST00000514778 UNC13AQ9UPW8 1703 aa13.63□□□□□ -0.23
SMAD1-213ENST00000514778 SCRIBQ14160 1630 aa13.61□□□□□ -0.23
SMAD1-213ENST00000514778 DMRT2Q9Y5R5 561 aa13.61□□□□□ -0.23
SMAD1-213ENST00000514778 SHROOM4Q9ULL8 1493 aa13.61□□□□□ -0.23
SMAD1-213ENST00000514778 BICRAQ9NZM4 1560 aa13.59□□□□□ -0.23
SMAD1-213ENST00000514778 PABPN1Q86U42 306 aaKnown RBP eCLIP13.53□□□□□ -0.24
SMAD1-213ENST00000514778 PPP4R3CPQ6ZMV5 832 aa13.49□□□□□ -0.25
SMAD1-213ENST00000514778 CNKSR2Q8WXI2 1034 aa13.24□□□□□ -0.29
SMAD1-213ENST00000514778 EIF4G1Q04637 1599 aaKnown RBP13.24□□□□□ -0.29
SMAD1-213ENST00000514778 HOXD11P31277 338 aaPredicted RBP13.17□□□□□ -0.3
SMAD1-213ENST00000514778 BAZ1AQ9NRL2 1556 aaPredicted RBP13.15□□□□□ -0.3
SMAD1-213ENST00000514778 DNAJC5BQ9UF47 199 aa13.14□□□□□ -0.31
SMAD1-213ENST00000514778 CECR2Q9BXF3 1484 aa13.12□□□□□ -0.31
SMAD1-213ENST00000514778 CC2D2AQ9P2K1 1620 aa13.12□□□□□ -0.31
SMAD1-213ENST00000514778 RNF216Q9NWF9 866 aaPredicted RBP13.1□□□□□ -0.31
SMAD1-213ENST00000514778 SMARCA4P51532 1647 aa13.1□□□□□ -0.31
SMAD1-213ENST00000514778 NCBP3Q53F19 620 aaKnown RBP13.04□□□□□ -0.32
SMAD1-213ENST00000514778 SMARCA2P51531 1590 aa13.03□□□□□ -0.32
SMAD1-213ENST00000514778 PEG3Q9GZU2 1588 aa13.03□□□□□ -0.32
SMAD1-213ENST00000514778 NCAPD3P42695 1498 aa13.03□□□□□ -0.32
SMAD1-213ENST00000514778 ATAD2BQ9ULI0 1458 aa13.01□□□□□ -0.33
SMAD1-213ENST00000514778 MROH2BQ7Z745 1585 aa13.01□□□□□ -0.33
SMAD1-213ENST00000514778 DCAF8L1A6NGE4 600 aa13□□□□□ -0.33
SMAD1-213ENST00000514778 HMGXB3Q12766 1538 aa12.96□□□□□ -0.33
SMAD1-213ENST00000514778 RSF1Q96T23 1441 aaPredicted RBP12.96□□□□□ -0.34
SMAD1-213ENST00000514778 BAZ1BQ9UIG0 1483 aaKnown RBP12.9□□□□□ -0.34
SMAD1-213ENST00000514778 WIZO95785 1651 aa12.85□□□□□ -0.35
SMAD1-213ENST00000514778 NPM3O75607 178 aaKnown RBP12.8□□□□□ -0.36
SMAD1-213ENST00000514778 TOP2AP11388 1531 aaKnown RBP12.79□□□□□ -0.36
SMAD1-213ENST00000514778 RNF39Q9H2S5 420 aa12.73□□□□□ -0.37
SMAD1-213ENST00000514778 CACNB1Q02641 598 aaPredicted RBP12.72□□□□□ -0.37
SMAD1-213ENST00000514778 SUPT5HO00267 1087 aaKnown RBP12.65□□□□□ -0.38
SMAD1-213ENST00000514778 LAMC3Q9Y6N6 1575 aa12.64□□□□□ -0.39
SMAD1-213ENST00000514778 KCNA4P22459 653 aa12.63□□□□□ -0.39
SMAD1-213ENST00000514778 CADPSQ9ULU8 1353 aa12.63□□□□□ -0.39
SMAD1-213ENST00000514778 CCDC88BA6NC98 1476 aa12.62□□□□□ -0.39
SMAD1-213ENST00000514778 CFTRP13569 1480 aa12.59□□□□□ -0.39
SMAD1-213ENST00000514778 PDS5BQ9NTI5 1447 aa12.57□□□□□ -0.4
SMAD1-213ENST00000514778 C1QBPQ07021 282 aaKnown RBP12.57□□□□□ -0.4
SMAD1-213ENST00000514778 NESP48681 1621 aa12.55□□□□□ -0.4
SMAD1-213ENST00000514778 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.52□□□□□ -0.41
SMAD1-213ENST00000514778 ERCC6Q03468 1493 aa12.5□□□□□ -0.41
SMAD1-213ENST00000514778 FANCD2Q9BXW9 1451 aa12.46□□□□□ -0.42
SMAD1-213ENST00000514778 PRDM2Q13029 1718 aa12.44□□□□□ -0.42
SMAD1-213ENST00000514778 CEP164Q9UPV0 1460 aa12.43□□□□□ -0.42
SMAD1-213ENST00000514778 KIF21AQ7Z4S6 1674 aa12.4□□□□□ -0.42
SMAD1-213ENST00000514778 MRC2Q9UBG0 1479 aa12.4□□□□□ -0.43
SMAD1-213ENST00000514778 CUX2O14529 1486 aa12.38□□□□□ -0.43
SMAD1-213ENST00000514778 THOC2Q8NI27 1593 aaKnown RBP12.37□□□□□ -0.43
SMAD1-213ENST00000514778 ABCC8Q09428 1581 aa12.36□□□□□ -0.43
SMAD1-213ENST00000514778 WDR62O43379 1518 aa12.36□□□□□ -0.43
SMAD1-213ENST00000514778 URB2Q14146 1524 aaKnown RBP12.3□□□□□ -0.44
SMAD1-213ENST00000514778 DNMBPQ6XZF7 1577 aa12.27□□□□□ -0.44
SMAD1-213ENST00000514778 TOPBP1Q92547 1522 aa12.27□□□□□ -0.45
SMAD1-213ENST00000514778 U3KPZ7 1027 aaPredicted RBP12.26□□□□□ -0.45
SMAD1-213ENST00000514778 WRNQ14191 1432 aaPredicted RBP eCLIP12.21□□□□□ -0.45
SMAD1-213ENST00000514778 CUX1P39880 1505 aa12.21□□□□□ -0.46
SMAD1-213ENST00000514778 SLC4A2P04920 1241 aa12.19□□□□□ -0.46
SMAD1-213ENST00000514778 IFT140Q96RY7 1462 aa12.19□□□□□ -0.46
SMAD1-213ENST00000514778 POLA1P09884 1462 aaPredicted RBP12.17□□□□□ -0.46
SMAD1-213ENST00000514778 TOP2BQ02880 1626 aa12.17□□□□□ -0.46
SMAD1-213ENST00000514778 BIVM-ERCC5R4GMW8 1640 aa12.15□□□□□ -0.46
SMAD1-213ENST00000514778 FGD5Q6ZNL6 1462 aa12.14□□□□□ -0.47
SMAD1-213ENST00000514778 SOGA1O94964 1423 aa12.14□□□□□ -0.47
SMAD1-213ENST00000514778 WDR97A6NE52 1622 aa12.13□□□□□ -0.47
SMAD1-213ENST00000514778 TARBP1Q13395 1621 aaKnown RBP12.12□□□□□ -0.47
SMAD1-213ENST00000514778 SYNJ1O43426 1573 aa12.12□□□□□ -0.47
SMAD1-213ENST00000514778 ABCA10Q8WWZ4 1543 aa12.08□□□□□ -0.48
SMAD1-213ENST00000514778 RAD54L2Q9Y4B4 1467 aa12.08□□□□□ -0.48
SMAD1-213ENST00000514778 ZNF608Q9ULD9 1512 aaPredicted RBP12.05□□□□□ -0.48
SMAD1-213ENST00000514778 SPINK5Q9NQ38 1064 aaPredicted RBP12.03□□□□□ -0.48
SMAD1-213ENST00000514778 EIF4G3O43432 1585 aaKnown RBP12.02□□□□□ -0.49
SMAD1-213ENST00000514778 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.02□□□□□ -0.49
SMAD1-213ENST00000514778 CAPN15O75808 1086 aa12.02□□□□□ -0.49
SMAD1-213ENST00000514778 APLP2Q06481 763 aa12.02□□□□□ -0.49
SMAD1-213ENST00000514778 HNRNPUL2Q1KMD3 747 aaKnown RBP12.02□□□□□ -0.49
SMAD1-213ENST00000514778 TDRD9Q8NDG6 1382 aaKnown RBP12.02□□□□□ -0.49
SMAD1-213ENST00000514778 TRIM41Q8WV44 630 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms