RNA–Protein interactions for RNA: ENST00000512517.1

LINC01258-201, Transcript of long intergenic non-protein coding RNA 1258, humanhuman

TSL 2 BASIC

Gene LINC01258, Length 2,059 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01258-201ENST00000512517 NISCHQ9Y2I1 1504 aa18.47■□□□□ 0.55
LINC01258-201ENST00000512517 CCDC180Q9P1Z9 1646 aa16.13■□□□□ 0.17
LINC01258-201ENST00000512517 PELP1Q8IZL8 1130 aaKnown RBP15.79■□□□□ 0.12
LINC01258-201ENST00000512517 MYT1Q01538 1121 aa15.53■□□□□ 0.08
LINC01258-201ENST00000512517 ZCCHC6Q5VYS8 1495 aaKnown RBP15.49■□□□□ 0.07
LINC01258-201ENST00000512517 DCAF8L2P0C7V8 631 aa15.45■□□□□ 0.06
LINC01258-201ENST00000512517 ABCC9O60706 1549 aa15.39■□□□□ 0.05
LINC01258-201ENST00000512517 DCAF1Q9Y4B6 1507 aa15.2■□□□□ 0.02
LINC01258-201ENST00000512517 SHROOM4Q9ULL8 1493 aa15.18■□□□□ 0.02
LINC01258-201ENST00000512517 NACADO15069 1562 aa15.03■□□□□ -0
LINC01258-201ENST00000512517 MYO15BQ96JP2 1530 aa15.03■□□□□ -0
LINC01258-201ENST00000512517 RB1CC1Q8TDY2 1594 aa14.94□□□□□ -0.02
LINC01258-201ENST00000512517 SCRIBQ14160 1630 aa14.92□□□□□ -0.02
LINC01258-201ENST00000512517 TTBK1Q5TCY1 1321 aaPredicted RBP14.88□□□□□ -0.03
LINC01258-201ENST00000512517 HRCP23327 699 aa14.88□□□□□ -0.03
LINC01258-201ENST00000512517 UNC13AQ9UPW8 1703 aa14.71□□□□□ -0.06
LINC01258-201ENST00000512517 SUPT5HO00267 1087 aaKnown RBP14.57□□□□□ -0.08
LINC01258-201ENST00000512517 PABPN1Q86U42 306 aaKnown RBP eCLIP14.53□□□□□ -0.08
LINC01258-201ENST00000512517 BICRAQ9NZM4 1560 aa14.47□□□□□ -0.09
LINC01258-201ENST00000512517 CECR2Q9BXF3 1484 aa14.39□□□□□ -0.11
LINC01258-201ENST00000512517 SCAF1Q9H7N4 1312 aaKnown RBP14.37□□□□□ -0.11
LINC01258-201ENST00000512517 RSF1Q96T23 1441 aaPredicted RBP14.31□□□□□ -0.12
LINC01258-201ENST00000512517 MROH2BQ7Z745 1585 aa14.3□□□□□ -0.12
LINC01258-201ENST00000512517 BAZ1AQ9NRL2 1556 aaPredicted RBP14.28□□□□□ -0.12
LINC01258-201ENST00000512517 SMARCA4P51532 1647 aa14.24□□□□□ -0.13
LINC01258-201ENST00000512517 WIZO95785 1651 aa14.21□□□□□ -0.13
LINC01258-201ENST00000512517 PPARGC1BQ86YN6 1023 aaKnown RBP14.21□□□□□ -0.13
LINC01258-201ENST00000512517 EIF4G1Q04637 1599 aaKnown RBP14.07□□□□□ -0.16
LINC01258-201ENST00000512517 PRKCSHP14314 528 aaPredicted RBP14.07□□□□□ -0.16
LINC01258-201ENST00000512517 ERICH6Q7L0X2 663 aa14.03□□□□□ -0.16
LINC01258-201ENST00000512517 BCL11AQ9H165 835 aa14.01□□□□□ -0.17
LINC01258-201ENST00000512517 TOP2AP11388 1531 aaKnown RBP14.01□□□□□ -0.17
LINC01258-201ENST00000512517 PEG3Q9GZU2 1588 aa14□□□□□ -0.17
LINC01258-201ENST00000512517 ATAD2BQ9ULI0 1458 aa14□□□□□ -0.17
LINC01258-201ENST00000512517 SMARCA2P51531 1590 aa13.99□□□□□ -0.17
LINC01258-201ENST00000512517 PCGF6Q9BYE7 350 aa13.98□□□□□ -0.17
LINC01258-201ENST00000512517 BAZ1BQ9UIG0 1483 aaKnown RBP13.95□□□□□ -0.18
LINC01258-201ENST00000512517 CENPBP07199 599 aaPredicted RBP13.92□□□□□ -0.18
LINC01258-201ENST00000512517 ACIN1Q9UKV3 1341 aaKnown RBP13.9□□□□□ -0.18
LINC01258-201ENST00000512517 CC2D2AQ9P2K1 1620 aa13.9□□□□□ -0.18
LINC01258-201ENST00000512517 ZEB1P37275 1124 aaPredicted RBP13.88□□□□□ -0.19
LINC01258-201ENST00000512517 CCDC88BA6NC98 1476 aa13.88□□□□□ -0.19
LINC01258-201ENST00000512517 APLP2Q06481 763 aa13.86□□□□□ -0.19
LINC01258-201ENST00000512517 NCAPD3P42695 1498 aa13.85□□□□□ -0.19
LINC01258-201ENST00000512517 HMGXB3Q12766 1538 aa13.84□□□□□ -0.19
LINC01258-201ENST00000512517 CHIC1Q5VXU3 224 aa13.83□□□□□ -0.2
LINC01258-201ENST00000512517 FAM9AQ8IZU1 332 aaPredicted RBP13.79□□□□□ -0.2
LINC01258-201ENST00000512517 GTF3C3Q9Y5Q9 886 aa13.71□□□□□ -0.21
LINC01258-201ENST00000512517 NEUROD1Q13562 356 aa13.68□□□□□ -0.22
LINC01258-201ENST00000512517 TRIM41Q8WV44 630 aa13.67□□□□□ -0.22
LINC01258-201ENST00000512517 ABCC8Q09428 1581 aa13.63□□□□□ -0.23
LINC01258-201ENST00000512517 DNAJC5BQ9UF47 199 aa13.59□□□□□ -0.23
LINC01258-201ENST00000512517 ANP32EQ9BTT0 268 aa13.57□□□□□ -0.24
LINC01258-201ENST00000512517 TRIM26Q12899 539 aaPredicted RBP13.55□□□□□ -0.24
LINC01258-201ENST00000512517 CFTRP13569 1480 aa13.54□□□□□ -0.24
LINC01258-201ENST00000512517 PRDM2Q13029 1718 aa13.54□□□□□ -0.24
LINC01258-201ENST00000512517 CADPSQ9ULU8 1353 aa13.53□□□□□ -0.24
LINC01258-201ENST00000512517 WRNQ14191 1432 aaPredicted RBP eCLIP13.5□□□□□ -0.25
LINC01258-201ENST00000512517 NESP48681 1621 aa13.48□□□□□ -0.25
LINC01258-201ENST00000512517 SYNJ1O43426 1573 aa13.46□□□□□ -0.25
LINC01258-201ENST00000512517 LAMC3Q9Y6N6 1575 aa13.43□□□□□ -0.26
LINC01258-201ENST00000512517 FANCD2Q9BXW9 1451 aa13.41□□□□□ -0.26
LINC01258-201ENST00000512517 TOP2BQ02880 1626 aa13.38□□□□□ -0.27
LINC01258-201ENST00000512517 CUX1P39880 1505 aa13.37□□□□□ -0.27
LINC01258-201ENST00000512517 LOC105371045A0A1W2PR82 267 aa13.36□□□□□ -0.27
LINC01258-201ENST00000512517 EHMT2Q96KQ7 1210 aa13.36□□□□□ -0.27
LINC01258-201ENST00000512517 BIVM-ERCC5R4GMW8 1640 aa13.36□□□□□ -0.27
LINC01258-201ENST00000512517 SLC24A1O60721 1099 aa13.36□□□□□ -0.27
LINC01258-201ENST00000512517 KIF21AQ7Z4S6 1674 aa13.34□□□□□ -0.27
LINC01258-201ENST00000512517 PDS5BQ9NTI5 1447 aa13.34□□□□□ -0.27
LINC01258-201ENST00000512517 SOGA1O94964 1423 aa13.33□□□□□ -0.28
LINC01258-201ENST00000512517 CEP164Q9UPV0 1460 aa13.33□□□□□ -0.28
LINC01258-201ENST00000512517 CSRNP3Q8WYN3 585 aa13.3□□□□□ -0.28
LINC01258-201ENST00000512517 RUSC2Q8N2Y8 1516 aa13.29□□□□□ -0.28
LINC01258-201ENST00000512517 CLSPNQ9HAW4 1339 aa13.27□□□□□ -0.29
LINC01258-201ENST00000512517 DNMBPQ6XZF7 1577 aa13.26□□□□□ -0.29
LINC01258-201ENST00000512517 TOPBP1Q92547 1522 aa13.25□□□□□ -0.29
LINC01258-201ENST00000512517 FGD5Q6ZNL6 1462 aa13.25□□□□□ -0.29
LINC01258-201ENST00000512517 EEA1Q15075 1411 aa13.23□□□□□ -0.29
LINC01258-201ENST00000512517 URB2Q14146 1524 aaKnown RBP13.23□□□□□ -0.29
LINC01258-201ENST00000512517 ERCC6Q03468 1493 aa13.22□□□□□ -0.29
LINC01258-201ENST00000512517 DIEXFQ68CQ4 756 aaKnown RBP13.19□□□□□ -0.3
LINC01258-201ENST00000512517 POLA1P09884 1462 aaPredicted RBP13.18□□□□□ -0.3
LINC01258-201ENST00000512517 CUX2O14529 1486 aa13.17□□□□□ -0.3
LINC01258-201ENST00000512517 RAD54L2Q9Y4B4 1467 aa13.17□□□□□ -0.3
LINC01258-201ENST00000512517 KIF27Q86VH2 1401 aa13.16□□□□□ -0.3
LINC01258-201ENST00000512517 MRC2Q9UBG0 1479 aa13.16□□□□□ -0.3
LINC01258-201ENST00000512517 UBTFP17480 764 aaKnown RBP13.12□□□□□ -0.31
LINC01258-201ENST00000512517 GOLGA3Q08378 1498 aa13.1□□□□□ -0.31
LINC01258-201ENST00000512517 KIF21BO75037 1637 aa13.09□□□□□ -0.31
LINC01258-201ENST00000512517 ABCA10Q8WWZ4 1543 aa13.09□□□□□ -0.31
LINC01258-201ENST00000512517 WDR62O43379 1518 aa13.08□□□□□ -0.32
LINC01258-201ENST00000512517 TSHZ2Q9NRE2 1034 aa13.08□□□□□ -0.32
LINC01258-201ENST00000512517 THOC2Q8NI27 1593 aaKnown RBP13.07□□□□□ -0.32
LINC01258-201ENST00000512517 WDR97A6NE52 1622 aa13.07□□□□□ -0.32
LINC01258-201ENST00000512517 DAXXQ9UER7 740 aaPredicted RBP13.07□□□□□ -0.32
LINC01258-201ENST00000512517 RAPGEF2Q9Y4G8 1499 aa13.06□□□□□ -0.32
LINC01258-201ENST00000512517 TDRD9Q8NDG6 1382 aaKnown RBP13.05□□□□□ -0.32
LINC01258-201ENST00000512517 UBE2Q2Q8WVN8 375 aa13.04□□□□□ -0.32
LINC01258-201ENST00000512517 MYT1LQ9UL68 1186 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms