RNA–Protein interactions for RNA: ENST00000512332.5

CPNE4-210, Transcript of copine 4, humanhuman

TSL 1 (best) BASIC

Gene CPNE4, Length 2,230 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-210ENST00000512332 NISCHQ9Y2I1 1504 aa19.52■□□□□ 0.72
CPNE4-210ENST00000512332 CCDC180Q9P1Z9 1646 aa16.71■□□□□ 0.27
CPNE4-210ENST00000512332 ZCCHC6Q5VYS8 1495 aaKnown RBP16.5■□□□□ 0.23
CPNE4-210ENST00000512332 SHROOM4Q9ULL8 1493 aa16.3■□□□□ 0.2
CPNE4-210ENST00000512332 DCAF1Q9Y4B6 1507 aa16.16■□□□□ 0.18
CPNE4-210ENST00000512332 SUPT5HO00267 1087 aaKnown RBP15.99■□□□□ 0.15
CPNE4-210ENST00000512332 DCAF8L2P0C7V8 631 aa15.95■□□□□ 0.14
CPNE4-210ENST00000512332 MYO15BQ96JP2 1530 aa15.76■□□□□ 0.11
CPNE4-210ENST00000512332 CHIC1Q5VXU3 224 aa15.63■□□□□ 0.09
CPNE4-210ENST00000512332 ABCC9O60706 1549 aa15.53■□□□□ 0.08
CPNE4-210ENST00000512332 NACADO15069 1562 aa15.47■□□□□ 0.07
CPNE4-210ENST00000512332 SCRIBQ14160 1630 aa15.44■□□□□ 0.06
CPNE4-210ENST00000512332 RSF1Q96T23 1441 aaPredicted RBP15.38■□□□□ 0.05
CPNE4-210ENST00000512332 RB1CC1Q8TDY2 1594 aa15.23■□□□□ 0.03
CPNE4-210ENST00000512332 CECR2Q9BXF3 1484 aa15.13■□□□□ 0.01
CPNE4-210ENST00000512332 MROH2BQ7Z745 1585 aa15.1■□□□□ 0.01
CPNE4-210ENST00000512332 LOC105371045A0A1W2PR82 267 aa15.05■□□□□ -0
CPNE4-210ENST00000512332 BAZ1AQ9NRL2 1556 aaPredicted RBP15.02□□□□□ -0.01
CPNE4-210ENST00000512332 TRIM41Q8WV44 630 aa15.01□□□□□ -0.01
CPNE4-210ENST00000512332 HRCP23327 699 aa15□□□□□ -0.01
CPNE4-210ENST00000512332 WIZO95785 1651 aa14.98□□□□□ -0.01
CPNE4-210ENST00000512332 PCGF6Q9BYE7 350 aa14.95□□□□□ -0.02
CPNE4-210ENST00000512332 UNC13AQ9UPW8 1703 aa14.88□□□□□ -0.03
CPNE4-210ENST00000512332 SMARCA4P51532 1647 aa14.86□□□□□ -0.03
CPNE4-210ENST00000512332 TOP2AP11388 1531 aaKnown RBP14.85□□□□□ -0.03
CPNE4-210ENST00000512332 EIF4G1Q04637 1599 aaKnown RBP14.83□□□□□ -0.04
CPNE4-210ENST00000512332 TRIM26Q12899 539 aaPredicted RBP14.83□□□□□ -0.04
CPNE4-210ENST00000512332 BICRAQ9NZM4 1560 aa14.73□□□□□ -0.05
CPNE4-210ENST00000512332 CCDC88BA6NC98 1476 aa14.73□□□□□ -0.05
CPNE4-210ENST00000512332 SMARCA2P51531 1590 aa14.73□□□□□ -0.05
CPNE4-210ENST00000512332 FAM9AQ8IZU1 332 aaPredicted RBP14.72□□□□□ -0.05
CPNE4-210ENST00000512332 PEG3Q9GZU2 1588 aa14.68□□□□□ -0.06
CPNE4-210ENST00000512332 PABPN1Q86U42 306 aaKnown RBP eCLIP14.6□□□□□ -0.07
CPNE4-210ENST00000512332 ABCC8Q09428 1581 aa14.58□□□□□ -0.08
CPNE4-210ENST00000512332 EEA1Q15075 1411 aa14.55□□□□□ -0.08
CPNE4-210ENST00000512332 ZEB1P37275 1124 aaPredicted RBP14.54□□□□□ -0.08
CPNE4-210ENST00000512332 PPARGC1BQ86YN6 1023 aaKnown RBP14.52□□□□□ -0.08
CPNE4-210ENST00000512332 ATAD2BQ9ULI0 1458 aa14.51□□□□□ -0.09
CPNE4-210ENST00000512332 EHMT2Q96KQ7 1210 aa14.47□□□□□ -0.09
CPNE4-210ENST00000512332 SOGA1O94964 1423 aa14.45□□□□□ -0.1
CPNE4-210ENST00000512332 WRNQ14191 1432 aaPredicted RBP eCLIP14.45□□□□□ -0.1
CPNE4-210ENST00000512332 TNIKQ9UKE5 1360 aa14.45□□□□□ -0.1
CPNE4-210ENST00000512332 BAZ1BQ9UIG0 1483 aaKnown RBP14.44□□□□□ -0.1
CPNE4-210ENST00000512332 CSRNP3Q8WYN3 585 aa14.43□□□□□ -0.1
CPNE4-210ENST00000512332 CEP162Q5TB80 1403 aa14.38□□□□□ -0.11
CPNE4-210ENST00000512332 RUSC2Q8N2Y8 1516 aa14.36□□□□□ -0.11
CPNE4-210ENST00000512332 GOLGA3Q08378 1498 aa14.35□□□□□ -0.11
CPNE4-210ENST00000512332 SYNJ1O43426 1573 aa14.33□□□□□ -0.11
CPNE4-210ENST00000512332 NCAPD3P42695 1498 aa14.31□□□□□ -0.12
CPNE4-210ENST00000512332 HMGXB3Q12766 1538 aa14.3□□□□□ -0.12
CPNE4-210ENST00000512332 CEP164Q9UPV0 1460 aa14.3□□□□□ -0.12
CPNE4-210ENST00000512332 KIF21BO75037 1637 aa14.29□□□□□ -0.12
CPNE4-210ENST00000512332 UBTFP17480 764 aaKnown RBP14.27□□□□□ -0.12
CPNE4-210ENST00000512332 TOP2BQ02880 1626 aa14.24□□□□□ -0.13
CPNE4-210ENST00000512332 AEBP2Q6ZN18 517 aaPredicted RBP14.21□□□□□ -0.13
CPNE4-210ENST00000512332 BIVM-ERCC5R4GMW8 1640 aa14.2□□□□□ -0.14
CPNE4-210ENST00000512332 CLIP1P30622 1438 aa14.15□□□□□ -0.14
CPNE4-210ENST00000512332 CFTRP13569 1480 aa14.14□□□□□ -0.15
CPNE4-210ENST00000512332 CCER1Q8TC90 406 aaPredicted RBP14.13□□□□□ -0.15
CPNE4-210ENST00000512332 RAPGEF2Q9Y4G8 1499 aa14.12□□□□□ -0.15
CPNE4-210ENST00000512332 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.11□□□□□ -0.15
CPNE4-210ENST00000512332 VPS8Q8N3P4 1428 aa14.11□□□□□ -0.15
CPNE4-210ENST00000512332 ERICH3Q5RHP9 1530 aa14.11□□□□□ -0.15
CPNE4-210ENST00000512332 PRXQ9BXM0 1461 aa14.09□□□□□ -0.15
CPNE4-210ENST00000512332 CUX1P39880 1505 aa14.07□□□□□ -0.16
CPNE4-210ENST00000512332 KIF27Q86VH2 1401 aa14.03□□□□□ -0.16
CPNE4-210ENST00000512332 PRDM2Q13029 1718 aa14.02□□□□□ -0.17
CPNE4-210ENST00000512332 TTBK1Q5TCY1 1321 aaPredicted RBP14.01□□□□□ -0.17
CPNE4-210ENST00000512332 APLP2Q06481 763 aa13.99□□□□□ -0.17
CPNE4-210ENST00000512332 CADPSQ9ULU8 1353 aa13.98□□□□□ -0.17
CPNE4-210ENST00000512332 ARAP1Q96P48 1450 aa13.92□□□□□ -0.18
CPNE4-210ENST00000512332 CC2D2AQ9P2K1 1620 aa13.88□□□□□ -0.19
CPNE4-210ENST00000512332 IGF1RP08069 1367 aa13.88□□□□□ -0.19
CPNE4-210ENST00000512332 CUX2O14529 1486 aa13.85□□□□□ -0.19
CPNE4-210ENST00000512332 HNRNPUL2Q1KMD3 747 aaKnown RBP13.84□□□□□ -0.19
CPNE4-210ENST00000512332 RANGAP1P46060 587 aaPredicted RBP13.84□□□□□ -0.19
CPNE4-210ENST00000512332 ARHGAP35Q9NRY4 1499 aa13.83□□□□□ -0.19
CPNE4-210ENST00000512332 FGD5Q6ZNL6 1462 aa13.83□□□□□ -0.2
CPNE4-210ENST00000512332 DIEXFQ68CQ4 756 aaKnown RBP13.82□□□□□ -0.2
CPNE4-210ENST00000512332 CLSPNQ9HAW4 1339 aa13.8□□□□□ -0.2
CPNE4-210ENST00000512332 FANCD2Q9BXW9 1451 aa13.8□□□□□ -0.2
CPNE4-210ENST00000512332 CARMIL1Q5VZK9 1371 aa13.8□□□□□ -0.2
CPNE4-210ENST00000512332 RRBP1Q9P2E9 1410 aaKnown RBP13.8□□□□□ -0.2
CPNE4-210ENST00000512332 MAP3K1Q13233 1512 aa13.78□□□□□ -0.2
CPNE4-210ENST00000512332 ZNF316A6NFI3 1004 aaPredicted RBP13.78□□□□□ -0.2
CPNE4-210ENST00000512332 KANK4Q5T7N3 995 aaPredicted RBP13.78□□□□□ -0.2
CPNE4-210ENST00000512332 DNMBPQ6XZF7 1577 aa13.76□□□□□ -0.21
CPNE4-210ENST00000512332 ABCA10Q8WWZ4 1543 aa13.74□□□□□ -0.21
CPNE4-210ENST00000512332 TOPBP1Q92547 1522 aa13.71□□□□□ -0.21
CPNE4-210ENST00000512332 CCNB3Q8WWL7 1395 aa13.7□□□□□ -0.22
CPNE4-210ENST00000512332 POLA1P09884 1462 aaPredicted RBP13.69□□□□□ -0.22
CPNE4-210ENST00000512332 DHX57Q6P158 1386 aaKnown RBP13.69□□□□□ -0.22
CPNE4-210ENST00000512332 TIAM1Q13009 1591 aa13.68□□□□□ -0.22
CPNE4-210ENST00000512332 LAMC3Q9Y6N6 1575 aa13.68□□□□□ -0.22
CPNE4-210ENST00000512332 FHAD1B1AJZ9 1412 aa13.68□□□□□ -0.22
CPNE4-210ENST00000512332 SCAF1Q9H7N4 1312 aaKnown RBP13.67□□□□□ -0.22
CPNE4-210ENST00000512332 CUL7Q14999 1698 aa13.66□□□□□ -0.22
CPNE4-210ENST00000512332 ACIN1Q9UKV3 1341 aaKnown RBP13.65□□□□□ -0.22
CPNE4-210ENST00000512332 RAD54L2Q9Y4B4 1467 aa13.65□□□□□ -0.22
CPNE4-210ENST00000512332 POTEDQ86YR6 584 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms