RNA–Protein interactions for RNA: ENST00000512053.1

HMGCR-211, Transcript of 3-hydroxy-3-methylglutaryl-CoA reductase, humanhuman

TSL 2

Gene HMGCR, Length 465 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCR-211ENST00000512053 AEBP2Q6ZN18 517 aaPredicted RBP22.42■■□□□ 1.18
HMGCR-211ENST00000512053 CHIC1Q5VXU3 224 aa20.84■□□□□ 0.93
HMGCR-211ENST00000512053 SENP3Q9H4L4 574 aaPredicted RBP19.09■□□□□ 0.65
HMGCR-211ENST00000512053 PHF23Q9BUL5 403 aaPredicted RBP18.8■□□□□ 0.6
HMGCR-211ENST00000512053 NISCHQ9Y2I1 1504 aa18.03■□□□□ 0.48
HMGCR-211ENST00000512053 FOXD1Q16676 465 aa17.89■□□□□ 0.45
HMGCR-211ENST00000512053 POTEDQ86YR6 584 aa17.18■□□□□ 0.34
HMGCR-211ENST00000512053 MSH5O43196 834 aa16.83■□□□□ 0.28
HMGCR-211ENST00000512053 PIAS4Q8N2W9 510 aaPredicted RBP16.54■□□□□ 0.24
HMGCR-211ENST00000512053 ABCC9O60706 1549 aa16.45■□□□□ 0.22
HMGCR-211ENST00000512053 PPP6R1Q9UPN7 881 aa16.44■□□□□ 0.22
HMGCR-211ENST00000512053 PLPPR3Q6T4P5 718 aa16.41■□□□□ 0.22
HMGCR-211ENST00000512053 ADRA2BP18089 450 aa16.32■□□□□ 0.2
HMGCR-211ENST00000512053 CCDC180Q9P1Z9 1646 aa16.19■□□□□ 0.18
HMGCR-211ENST00000512053 RB1CC1Q8TDY2 1594 aa15.58■□□□□ 0.08
HMGCR-211ENST00000512053 DNAJC5BQ9UF47 199 aa15.56■□□□□ 0.08
HMGCR-211ENST00000512053 DCAF8L2P0C7V8 631 aa15.5■□□□□ 0.07
HMGCR-211ENST00000512053 NACADO15069 1562 aa15.42■□□□□ 0.06
HMGCR-211ENST00000512053 PABPN1Q86U42 306 aaKnown RBP eCLIP15.35■□□□□ 0.05
HMGCR-211ENST00000512053 MYO15BQ96JP2 1530 aa15.13■□□□□ 0.01
HMGCR-211ENST00000512053 MAPK8IP2Q13387 824 aaPredicted RBP15.13■□□□□ 0.01
HMGCR-211ENST00000512053 DMRT2Q9Y5R5 561 aa15.11■□□□□ 0.01
HMGCR-211ENST00000512053 UNC13AQ9UPW8 1703 aa15.03■□□□□ -0
HMGCR-211ENST00000512053 BICRAQ9NZM4 1560 aa15.02■□□□□ -0
HMGCR-211ENST00000512053 SHROOM4Q9ULL8 1493 aa14.9□□□□□ -0.02
HMGCR-211ENST00000512053 ZCCHC6Q5VYS8 1495 aaKnown RBP14.89□□□□□ -0.03
HMGCR-211ENST00000512053 DCAF1Q9Y4B6 1507 aa14.87□□□□□ -0.03
HMGCR-211ENST00000512053 CECR2Q9BXF3 1484 aa14.85□□□□□ -0.03
HMGCR-211ENST00000512053 SCAF1Q9H7N4 1312 aaKnown RBP14.83□□□□□ -0.04
HMGCR-211ENST00000512053 CC2D2AQ9P2K1 1620 aa14.8□□□□□ -0.04
HMGCR-211ENST00000512053 SCRIBQ14160 1630 aa14.78□□□□□ -0.04
HMGCR-211ENST00000512053 EIF4G1Q04637 1599 aaKnown RBP14.73□□□□□ -0.05
HMGCR-211ENST00000512053 CACNB1Q02641 598 aaPredicted RBP14.66□□□□□ -0.06
HMGCR-211ENST00000512053 DNAJC5Q9H3Z4 198 aa14.48□□□□□ -0.09
HMGCR-211ENST00000512053 HOXD11P31277 338 aaPredicted RBP14.42□□□□□ -0.1
HMGCR-211ENST00000512053 RNF39Q9H2S5 420 aa14.38□□□□□ -0.11
HMGCR-211ENST00000512053 DCAF8L1A6NGE4 600 aa14.37□□□□□ -0.11
HMGCR-211ENST00000512053 PPP4R3CPQ6ZMV5 832 aa14.35□□□□□ -0.11
HMGCR-211ENST00000512053 ERCC6Q03468 1493 aa14.28□□□□□ -0.12
HMGCR-211ENST00000512053 CUX2O14529 1486 aa14.26□□□□□ -0.13
HMGCR-211ENST00000512053 NCAPD3P42695 1498 aa14.25□□□□□ -0.13
HMGCR-211ENST00000512053 ATAD2BQ9ULI0 1458 aa14.18□□□□□ -0.14
HMGCR-211ENST00000512053 CNKSR2Q8WXI2 1034 aa14.16□□□□□ -0.14
HMGCR-211ENST00000512053 RNF216Q9NWF9 866 aaPredicted RBP14.16□□□□□ -0.14
HMGCR-211ENST00000512053 SMARCA2P51531 1590 aa14.14□□□□□ -0.15
HMGCR-211ENST00000512053 C1QBPQ07021 282 aaKnown RBP14.1□□□□□ -0.15
HMGCR-211ENST00000512053 HMGXB3Q12766 1538 aa14.1□□□□□ -0.15
HMGCR-211ENST00000512053 SMARCA4P51532 1647 aa14.07□□□□□ -0.16
HMGCR-211ENST00000512053 BAZ1BQ9UIG0 1483 aaKnown RBP14.06□□□□□ -0.16
HMGCR-211ENST00000512053 NESP48681 1621 aa14.04□□□□□ -0.16
HMGCR-211ENST00000512053 BAZ1AQ9NRL2 1556 aaPredicted RBP14.03□□□□□ -0.16
HMGCR-211ENST00000512053 PDS5BQ9NTI5 1447 aa13.95□□□□□ -0.18
HMGCR-211ENST00000512053 LAMC3Q9Y6N6 1575 aa13.93□□□□□ -0.18
HMGCR-211ENST00000512053 PEG3Q9GZU2 1588 aa13.92□□□□□ -0.18
HMGCR-211ENST00000512053 MROH2BQ7Z745 1585 aa13.88□□□□□ -0.19
HMGCR-211ENST00000512053 THOC2Q8NI27 1593 aaKnown RBP13.88□□□□□ -0.19
HMGCR-211ENST00000512053 CADPSQ9ULU8 1353 aa13.85□□□□□ -0.19
HMGCR-211ENST00000512053 TRIM41Q8WV44 630 aa13.84□□□□□ -0.19
HMGCR-211ENST00000512053 MRC2Q9UBG0 1479 aa13.78□□□□□ -0.2
HMGCR-211ENST00000512053 KIF21AQ7Z4S6 1674 aa13.78□□□□□ -0.2
HMGCR-211ENST00000512053 CEP164Q9UPV0 1460 aa13.71□□□□□ -0.21
HMGCR-211ENST00000512053 WDR62O43379 1518 aa13.7□□□□□ -0.22
HMGCR-211ENST00000512053 OSCARQ8IYS5 282 aa13.69□□□□□ -0.22
HMGCR-211ENST00000512053 WIZO95785 1651 aa13.67□□□□□ -0.22
HMGCR-211ENST00000512053 FANCD2Q9BXW9 1451 aa13.67□□□□□ -0.22
HMGCR-211ENST00000512053 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.62□□□□□ -0.23
HMGCR-211ENST00000512053 CFTRP13569 1480 aa13.61□□□□□ -0.23
HMGCR-211ENST00000512053 NCBP3Q53F19 620 aaKnown RBP13.6□□□□□ -0.23
HMGCR-211ENST00000512053 RSF1Q96T23 1441 aaPredicted RBP13.56□□□□□ -0.24
HMGCR-211ENST00000512053 TOP2AP11388 1531 aaKnown RBP13.53□□□□□ -0.24
HMGCR-211ENST00000512053 URB2Q14146 1524 aaKnown RBP13.52□□□□□ -0.25
HMGCR-211ENST00000512053 NPM3O75607 178 aaKnown RBP13.51□□□□□ -0.25
HMGCR-211ENST00000512053 IFT140Q96RY7 1462 aa13.44□□□□□ -0.26
HMGCR-211ENST00000512053 U3KPZ7 1027 aaPredicted RBP13.4□□□□□ -0.26
HMGCR-211ENST00000512053 CCDC88BA6NC98 1476 aa13.4□□□□□ -0.26
HMGCR-211ENST00000512053 ABCC8Q09428 1581 aa13.39□□□□□ -0.27
HMGCR-211ENST00000512053 ZNF608Q9ULD9 1512 aaPredicted RBP13.39□□□□□ -0.27
HMGCR-211ENST00000512053 TOPBP1Q92547 1522 aa13.36□□□□□ -0.27
HMGCR-211ENST00000512053 FBLN2P98095 1184 aa13.36□□□□□ -0.27
HMGCR-211ENST00000512053 CYB5RLQ6IPT4 315 aa13.36□□□□□ -0.27
HMGCR-211ENST00000512053 RIMBP3CA6NJZ7 1639 aa13.35□□□□□ -0.27
HMGCR-211ENST00000512053 RIMBP3BA6NNM3 1639 aa13.35□□□□□ -0.27
HMGCR-211ENST00000512053 RIMBP3Q9UFD9 1639 aa13.35□□□□□ -0.27
HMGCR-211ENST00000512053 POTEHQ6S545 545 aa13.35□□□□□ -0.27
HMGCR-211ENST00000512053 ARHGEF11O15085 1522 aa13.34□□□□□ -0.27
HMGCR-211ENST00000512053 TRHP20396 242 aaPredicted RBP13.32□□□□□ -0.28
HMGCR-211ENST00000512053 DSG3P32926 999 aa13.32□□□□□ -0.28
HMGCR-211ENST00000512053 PRDM2Q13029 1718 aa13.31□□□□□ -0.28
HMGCR-211ENST00000512053 SPINK5Q9NQ38 1064 aaPredicted RBP13.31□□□□□ -0.28
HMGCR-211ENST00000512053 AQRO60306 1485 aaKnown RBP eCLIP13.29□□□□□ -0.282e-26■■■■■ 65.6
HMGCR-211ENST00000512053 DNMBPQ6XZF7 1577 aa13.28□□□□□ -0.28
HMGCR-211ENST00000512053 EIF4G3O43432 1585 aaKnown RBP13.27□□□□□ -0.29
HMGCR-211ENST00000512053 SOGA1O94964 1423 aa13.22□□□□□ -0.29
HMGCR-211ENST00000512053 CHMP7Q8WUX9 453 aaPredicted RBP13.22□□□□□ -0.29
HMGCR-211ENST00000512053 POLA1P09884 1462 aaPredicted RBP13.22□□□□□ -0.29
HMGCR-211ENST00000512053 TDRD9Q8NDG6 1382 aaKnown RBP13.21□□□□□ -0.29
HMGCR-211ENST00000512053 CAPN15O75808 1086 aa13.21□□□□□ -0.29
HMGCR-211ENST00000512053 TARBP1Q13395 1621 aaKnown RBP13.2□□□□□ -0.3
HMGCR-211ENST00000512053 RAD54L2Q9Y4B4 1467 aa13.18□□□□□ -0.3
HMGCR-211ENST00000512053 ARAP1Q96P48 1450 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms