RNA–Protein interactions for RNA: ENST00000509982.5

CDK11A-223, Transcript of cyclin dependent kinase 11A, human

TSL 5

Gene CDK11A, Length 2,306 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK11A-223	ENST00000509982	NISCH	Q9Y2I1	1504 aa		39.06	■■■■□ 3.84
CDK11A-223	ENST00000509982	CCDC180	Q9P1Z9	1646 aa		33.29	■■■□□ 2.92
CDK11A-223	ENST00000509982	SHROOM4	Q9ULL8	1493 aa		33.14	■■■□□ 2.9
CDK11A-223	ENST00000509982	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.04	■■■□□ 2.88
CDK11A-223	ENST00000509982	SUPT5H	O00267	1087 aa	Known RBP	32.41	■■■□□ 2.78
CDK11A-223	ENST00000509982	DCAF8L2	P0C7V8	631 aa		32.29	■■■□□ 2.76
CDK11A-223	ENST00000509982	DCAF1	Q9Y4B6	1507 aa		32.07	■■■□□ 2.72
CDK11A-223	ENST00000509982	CHIC1	Q5VXU3	224 aa		31.49	■■■□□ 2.63
CDK11A-223	ENST00000509982	MYO15B	Q96JP2	1530 aa		31.38	■■■□□ 2.61
CDK11A-223	ENST00000509982	SCRIB	Q14160	1630 aa		31.16	■■■□□ 2.58
CDK11A-223	ENST00000509982	ABCC9	O60706	1549 aa		31.15	■■■□□ 2.58
CDK11A-223	ENST00000509982	RSF1	Q96T23	1441 aa	Predicted RBP	30.86	■■■□□ 2.53
CDK11A-223	ENST00000509982	NACAD	O15069	1562 aa		30.79	■■■□□ 2.52
CDK11A-223	ENST00000509982	LOC105371045	A0A1W2PR82	267 aa		30.53	■■■□□ 2.48
CDK11A-223	ENST00000509982	RB1CC1	Q8TDY2	1594 aa		30.52	■■■□□ 2.48
CDK11A-223	ENST00000509982	CECR2	Q9BXF3	1484 aa		30.48	■■■□□ 2.47
CDK11A-223	ENST00000509982	MROH2B	Q7Z745	1585 aa		30.37	■■■□□ 2.45
CDK11A-223	ENST00000509982	PCGF6	Q9BYE7	350 aa		30.33	■■■□□ 2.45
CDK11A-223	ENST00000509982	HRC	P23327	699 aa		30.27	■■■□□ 2.44
CDK11A-223	ENST00000509982	TRIM41	Q8WV44	630 aa		30.21	■■■□□ 2.43
CDK11A-223	ENST00000509982	WIZ	O95785	1651 aa		30.2	■■■□□ 2.42
CDK11A-223	ENST00000509982	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.01	■■■□□ 2.39
CDK11A-223	ENST00000509982	FAM9A	Q8IZU1	332 aa	Predicted RBP	29.94	■■■□□ 2.38
CDK11A-223	ENST00000509982	UNC13A	Q9UPW8	1703 aa		29.89	■■■□□ 2.38
CDK11A-223	ENST00000509982	TRIM26	Q12899	539 aa	Predicted RBP	29.8	■■■□□ 2.36
CDK11A-223	ENST00000509982	SMARCA4	P51532	1647 aa		29.78	■■■□□ 2.36
CDK11A-223	ENST00000509982	EIF4G1	Q04637	1599 aa	Known RBP	29.78	■■■□□ 2.36
CDK11A-223	ENST00000509982	TOP2A	P11388	1531 aa	Known RBP	29.72	■■■□□ 2.35
CDK11A-223	ENST00000509982	PPARGC1B	Q86YN6	1023 aa	Known RBP	29.67	■■■□□ 2.34
CDK11A-223	ENST00000509982	EHMT2	Q96KQ7	1210 aa		29.67	■■■□□ 2.34
CDK11A-223	ENST00000509982	CCDC88B	A6NC98	1476 aa		29.58	■■■□□ 2.33
CDK11A-223	ENST00000509982	SMARCA2	P51531	1590 aa		29.57	■■■□□ 2.32
CDK11A-223	ENST00000509982	BICRA	Q9NZM4	1560 aa		29.53	■■■□□ 2.32
CDK11A-223	ENST00000509982	PABPN1	Q86U42	306 aa	Known RBP eCLIP	29.5	■■■□□ 2.31
CDK11A-223	ENST00000509982	ABCC8	Q09428	1581 aa		29.46	■■■□□ 2.31
CDK11A-223	ENST00000509982	PEG3	Q9GZU2	1588 aa		29.24	■■■□□ 2.27
CDK11A-223	ENST00000509982	SOGA1	O94964	1423 aa		29.16	■■■□□ 2.26
CDK11A-223	ENST00000509982	ZEB1	P37275	1124 aa	Predicted RBP	29.06	■■■□□ 2.24
CDK11A-223	ENST00000509982	ATAD2B	Q9ULI0	1458 aa		29.04	■■■□□ 2.24
CDK11A-223	ENST00000509982	RUSC2	Q8N2Y8	1516 aa		29.03	■■■□□ 2.24
CDK11A-223	ENST00000509982	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.97	■■■□□ 2.23
CDK11A-223	ENST00000509982	EEA1	Q15075	1411 aa		28.97	■■■□□ 2.23
CDK11A-223	ENST00000509982	CEP162	Q5TB80	1403 aa		28.95	■■■□□ 2.23
CDK11A-223	ENST00000509982	BAZ1B	Q9UIG0	1483 aa	Known RBP	28.94	■■■□□ 2.22
CDK11A-223	ENST00000509982	CSRNP3	Q8WYN3	585 aa		28.94	■■■□□ 2.22
CDK11A-223	ENST00000509982	TNIK	Q9UKE5	1360 aa		28.91	■■■□□ 2.22
CDK11A-223	ENST00000509982	SYNJ1	O43426	1573 aa		28.87	■■■□□ 2.21
CDK11A-223	ENST00000509982	UBTF	P17480	764 aa	Known RBP	28.78	■■■□□ 2.2
CDK11A-223	ENST00000509982	GOLGA3	Q08378	1498 aa		28.77	■■■□□ 2.2
CDK11A-223	ENST00000509982	TTBK1	Q5TCY1	1321 aa	Predicted RBP	28.69	■■■□□ 2.18
CDK11A-223	ENST00000509982	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	28.65	■■■□□ 2.18
CDK11A-223	ENST00000509982	CEP164	Q9UPV0	1460 aa		28.63	■■■□□ 2.17
CDK11A-223	ENST00000509982	KIF21B	O75037	1637 aa		28.62	■■■□□ 2.17
CDK11A-223	ENST00000509982	CCER1	Q8TC90	406 aa	Predicted RBP	28.54	■■■□□ 2.16
CDK11A-223	ENST00000509982	TOP2B	Q02880	1626 aa		28.52	■■■□□ 2.16
CDK11A-223	ENST00000509982	HMGXB3	Q12766	1538 aa		28.5	■■■□□ 2.15
CDK11A-223	ENST00000509982	NCAPD3	P42695	1498 aa		28.5	■■■□□ 2.15
CDK11A-223	ENST00000509982	RAPGEF2	Q9Y4G8	1499 aa		28.46	■■■□□ 2.15
CDK11A-223	ENST00000509982	CLIP1	P30622	1438 aa		28.43	■■■□□ 2.14
CDK11A-223	ENST00000509982	BIVM-ERCC5	R4GMW8	1640 aa		28.43	■■■□□ 2.14
CDK11A-223	ENST00000509982	VPS8	Q8N3P4	1428 aa		28.31	■■■□□ 2.12
CDK11A-223	ENST00000509982	CUX1	P39880	1505 aa		28.28	■■■□□ 2.12
CDK11A-223	ENST00000509982	CFTR	P13569	1480 aa		28.24	■■■□□ 2.11
CDK11A-223	ENST00000509982	RANGAP1	P46060	587 aa	Predicted RBP	28.23	■■■□□ 2.11
CDK11A-223	ENST00000509982	PRX	Q9BXM0	1461 aa		28.21	■■■□□ 2.11
CDK11A-223	ENST00000509982	ERICH3	Q5RHP9	1530 aa		28.18	■■■□□ 2.1
CDK11A-223	ENST00000509982	APLP2	Q06481	763 aa		28.08	■■■□□ 2.09
CDK11A-223	ENST00000509982	KIF27	Q86VH2	1401 aa		28.08	■■■□□ 2.09
CDK11A-223	ENST00000509982	HNRNPUL2	Q1KMD3	747 aa	Known RBP	28.07	■■■□□ 2.08
CDK11A-223	ENST00000509982	ARAP1	Q96P48	1450 aa		28.03	■■■□□ 2.08
CDK11A-223	ENST00000509982	PRDM2	Q13029	1718 aa		28.02	■■■□□ 2.08
CDK11A-223	ENST00000509982	CADPS	Q9ULU8	1353 aa		27.93	■■■□□ 2.06
CDK11A-223	ENST00000509982	DIEXF	Q68CQ4	756 aa	Known RBP	27.9	■■■□□ 2.06
CDK11A-223	ENST00000509982	CUX2	O14529	1486 aa		27.85	■■■□□ 2.05
CDK11A-223	ENST00000509982	CC2D2A	Q9P2K1	1620 aa		27.85	■■■□□ 2.05
CDK11A-223	ENST00000509982	KANK4	Q5T7N3	995 aa	Predicted RBP	27.83	■■■□□ 2.04
CDK11A-223	ENST00000509982	ARHGAP35	Q9NRY4	1499 aa		27.81	■■■□□ 2.04
CDK11A-223	ENST00000509982	IGF1R	P08069	1367 aa		27.8	■■■□□ 2.04
CDK11A-223	ENST00000509982	SCAF1	Q9H7N4	1312 aa	Known RBP	27.79	■■■□□ 2.04
CDK11A-223	ENST00000509982	FGD5	Q6ZNL6	1462 aa		27.78	■■■□□ 2.04
CDK11A-223	ENST00000509982	ZNF316	A6NFI3	1004 aa	Predicted RBP	27.75	■■■□□ 2.03
CDK11A-223	ENST00000509982	FANCD2	Q9BXW9	1451 aa		27.67	■■■□□ 2.02
CDK11A-223	ENST00000509982	CARMIL1	Q5VZK9	1371 aa		27.66	■■■□□ 2.02
CDK11A-223	ENST00000509982	RRBP1	Q9P2E9	1410 aa	Known RBP	27.64	■■■□□ 2.02
CDK11A-223	ENST00000509982	ACIN1	Q9UKV3	1341 aa	Known RBP	27.58	■■■□□ 2.01
CDK11A-223	ENST00000509982	NEUROD1	Q13562	356 aa		27.57	■■■□□ 2
CDK11A-223	ENST00000509982	DHX57	Q6P158	1386 aa	Known RBP	27.56	■■■□□ 2
CDK11A-223	ENST00000509982	DNMBP	Q6XZF7	1577 aa		27.53	■■■□□ 2
CDK11A-223	ENST00000509982	NES	P48681	1621 aa		27.52	■■■□□ 2
CDK11A-223	ENST00000509982	RAD54L2	Q9Y4B4	1467 aa		27.52	■■■□□ 2
CDK11A-223	ENST00000509982	CCNB3	Q8WWL7	1395 aa		27.51	■■□□□ 1.99
CDK11A-223	ENST00000509982	TOPBP1	Q92547	1522 aa		27.49	■■□□□ 1.99
CDK11A-223	ENST00000509982	TIAM1	Q13009	1591 aa		27.48	■■□□□ 1.99
CDK11A-223	ENST00000509982	POLA1	P09884	1462 aa	Predicted RBP	27.47	■■□□□ 1.99
CDK11A-223	ENST00000509982	CLSPN	Q9HAW4	1339 aa		27.47	■■□□□ 1.99
CDK11A-223	ENST00000509982	ABCA10	Q8WWZ4	1543 aa		27.46	■■□□□ 1.99
CDK11A-223	ENST00000509982	MAP3K1	Q13233	1512 aa		27.44	■■□□□ 1.98
CDK11A-223	ENST00000509982	CENPB	P07199	599 aa	Predicted RBP	27.4	■■□□□ 1.98
CDK11A-223	ENST00000509982	LRRC9	Q6ZRR7	1453 aa		27.37	■■□□□ 1.97
CDK11A-223	ENST00000509982	ITGAE	P38570	1179 aa		27.36	■■□□□ 1.97

Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms