RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, human

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEDD4-208	ENST00000508342	NISCH	Q9Y2I1	1504 aa		5.76	□□□□□ -1.49
NEDD4-208	ENST00000508342	AEBP2	Q6ZN18	517 aa	Predicted RBP	5.73	□□□□□ -1.49
NEDD4-208	ENST00000508342	DCAF8L2	P0C7V8	631 aa		5.71	□□□□□ -1.49
NEDD4-208	ENST00000508342	CHIC1	Q5VXU3	224 aa		5.55	□□□□□ -1.52
NEDD4-208	ENST00000508342	ABCC9	O60706	1549 aa		5.36	□□□□□ -1.55
NEDD4-208	ENST00000508342	CCDC180	Q9P1Z9	1646 aa		5.22	□□□□□ -1.57
NEDD4-208	ENST00000508342	PHF23	Q9BUL5	403 aa	Predicted RBP	5.2	□□□□□ -1.58
NEDD4-208	ENST00000508342	PABPN1	Q86U42	306 aa	Known RBP eCLIP	5.12	□□□□□ -1.59
NEDD4-208	ENST00000508342	SHROOM4	Q9ULL8	1493 aa		5.11	□□□□□ -1.59
NEDD4-208	ENST00000508342	TTBK1	Q5TCY1	1321 aa	Predicted RBP	5.11	□□□□□ -1.59
NEDD4-208	ENST00000508342	RB1CC1	Q8TDY2	1594 aa		5.11	□□□□□ -1.59
NEDD4-208	ENST00000508342	MYT1	Q01538	1121 aa		5.06	□□□□□ -1.6
NEDD4-208	ENST00000508342	SCRIB	Q14160	1630 aa		5.03	□□□□□ -1.6
NEDD4-208	ENST00000508342	EHMT2	Q96KQ7	1210 aa		5.03	□□□□□ -1.6
NEDD4-208	ENST00000508342	FAM9A	Q8IZU1	332 aa	Predicted RBP	5.02	□□□□□ -1.61
NEDD4-208	ENST00000508342	SLC24A1	O60721	1099 aa		4.97	□□□□□ -1.61
NEDD4-208	ENST00000508342	NACAD	O15069	1562 aa		4.95	□□□□□ -1.62
NEDD4-208	ENST00000508342	ERCC6	Q03468	1493 aa		4.93	□□□□□ -1.62
NEDD4-208	ENST00000508342	SUPT5H	O00267	1087 aa	Known RBP	4.89	□□□□□ -1.63
NEDD4-208	ENST00000508342	PELP1	Q8IZL8	1130 aa	Known RBP	4.84	□□□□□ -1.63
NEDD4-208	ENST00000508342	UNC13A	Q9UPW8	1703 aa		4.84	□□□□□ -1.63
NEDD4-208	ENST00000508342	FBLN2	P98095	1184 aa		4.84	□□□□□ -1.64
NEDD4-208	ENST00000508342	TRIM41	Q8WV44	630 aa		4.83	□□□□□ -1.64
NEDD4-208	ENST00000508342	ERICH6	Q7L0X2	663 aa		4.82	□□□□□ -1.64
NEDD4-208	ENST00000508342	MYT1L	Q9UL68	1186 aa		4.81	□□□□□ -1.64
NEDD4-208	ENST00000508342	ATP1B4	Q9UN42	357 aa	Predicted RBP	4.8	□□□□□ -1.64
NEDD4-208	ENST00000508342	CECR2	Q9BXF3	1484 aa		4.78	□□□□□ -1.64
NEDD4-208	ENST00000508342	RANGAP1	P46060	587 aa	Predicted RBP	4.77	□□□□□ -1.65
NEDD4-208	ENST00000508342	TRH	P20396	242 aa	Predicted RBP	4.76	□□□□□ -1.65
NEDD4-208	ENST00000508342	CC2D2A	Q9P2K1	1620 aa		4.75	□□□□□ -1.65
NEDD4-208	ENST00000508342	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	4.73	□□□□□ -1.65
NEDD4-208	ENST00000508342	HNRNPUL2	Q1KMD3	747 aa	Known RBP	4.73	□□□□□ -1.65
NEDD4-208	ENST00000508342	ZCCHC6	Q5VYS8	1495 aa	Known RBP	4.72	□□□□□ -1.65
NEDD4-208	ENST00000508342	PLPPR3	Q6T4P5	718 aa		4.72	□□□□□ -1.65
NEDD4-208	ENST00000508342	BAZ1B	Q9UIG0	1483 aa	Known RBP	4.71	□□□□□ -1.66
NEDD4-208	ENST00000508342	SMARCA2	P51531	1590 aa		4.69	□□□□□ -1.66
NEDD4-208	ENST00000508342	NPM1	P06748	294 aa	Known RBP eCLIP	4.68	□□□□□ -1.66
NEDD4-208	ENST00000508342	DAXX	Q9UER7	740 aa	Predicted RBP	4.67	□□□□□ -1.66
NEDD4-208	ENST00000508342	APLP2	Q06481	763 aa		4.66	□□□□□ -1.66
NEDD4-208	ENST00000508342	AMER1	Q5JTC6	1135 aa	Predicted RBP	4.66	□□□□□ -1.66
NEDD4-208	ENST00000508342	EIF4G1	Q04637	1599 aa	Known RBP	4.65	□□□□□ -1.66
NEDD4-208	ENST00000508342	CHMP7	Q8WUX9	453 aa	Predicted RBP	4.63	□□□□□ -1.67
NEDD4-208	ENST00000508342	PDS5B	Q9NTI5	1447 aa		4.61	□□□□□ -1.67
NEDD4-208	ENST00000508342	ESF1	Q9H501	851 aa	Known RBP	4.59	□□□□□ -1.67
NEDD4-208	ENST00000508342	UBTF	P17480	764 aa	Known RBP	4.59	□□□□□ -1.67
NEDD4-208	ENST00000508342	SMARCA4	P51532	1647 aa		4.59	□□□□□ -1.68
NEDD4-208	ENST00000508342	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	4.59	□□□□□ -1.68
NEDD4-208	ENST00000508342	CEP164	Q9UPV0	1460 aa		4.59	□□□□□ -1.68
NEDD4-208	ENST00000508342	DNAJC5B	Q9UF47	199 aa		4.57	□□□□□ -1.68
NEDD4-208	ENST00000508342	DCAF1	Q9Y4B6	1507 aa		4.57	□□□□□ -1.68
NEDD4-208	ENST00000508342	WIZ	O95785	1651 aa		4.56	□□□□□ -1.68
NEDD4-208	ENST00000508342	KIF21A	Q7Z4S6	1674 aa		4.56	□□□□□ -1.68
NEDD4-208	ENST00000508342	SLC4A1AP	Q9BWU0	796 aa	Known RBP	4.56	□□□□□ -1.68
NEDD4-208	ENST00000508342	ADRA2B	P18089	450 aa		4.56	□□□□□ -1.68
NEDD4-208	ENST00000508342	BCAN	Q96GW7	911 aa		4.56	□□□□□ -1.68
NEDD4-208	ENST00000508342	ARID4B	Q4LE39	1312 aa	Predicted RBP	4.55	□□□□□ -1.68
NEDD4-208	ENST00000508342	KCNA4	P22459	653 aa		4.55	□□□□□ -1.68
NEDD4-208	ENST00000508342	MYO15B	Q96JP2	1530 aa		4.54	□□□□□ -1.68
NEDD4-208	ENST00000508342	NCBP3	Q53F19	620 aa	Known RBP	4.54	□□□□□ -1.68
NEDD4-208	ENST00000508342	ARX	Q96QS3	562 aa		4.53	□□□□□ -1.68
NEDD4-208	ENST00000508342	OSCAR	Q8IYS5	282 aa		4.53	□□□□□ -1.68
NEDD4-208	ENST00000508342	RTN4	Q9NQC3	1192 aa	Known RBP	4.53	□□□□□ -1.68
NEDD4-208	ENST00000508342	PRDM2	Q13029	1718 aa		4.53	□□□□□ -1.68
NEDD4-208	ENST00000508342	ARID3C	A6NKF2	412 aa		4.53	□□□□□ -1.68
NEDD4-208	ENST00000508342	BICRA	Q9NZM4	1560 aa		4.52	□□□□□ -1.69
NEDD4-208	ENST00000508342	MRC2	Q9UBG0	1479 aa		4.51	□□□□□ -1.69
NEDD4-208	ENST00000508342	CUX2	O14529	1486 aa		4.5	□□□□□ -1.69
NEDD4-208	ENST00000508342	CYB5RL	Q6IPT4	315 aa		4.5	□□□□□ -1.69
NEDD4-208	ENST00000508342	LAMC3	Q9Y6N6	1575 aa		4.49	□□□□□ -1.69
NEDD4-208	ENST00000508342	FANCD2	Q9BXW9	1451 aa		4.49	□□□□□ -1.69
NEDD4-208	ENST00000508342	SCAF1	Q9H7N4	1312 aa	Known RBP	4.47	□□□□□ -1.69
NEDD4-208	ENST00000508342	CSRNP3	Q8WYN3	585 aa		4.47	□□□□□ -1.69
NEDD4-208	ENST00000508342	P3H3	Q8IVL6	736 aa		4.47	□□□□□ -1.69
NEDD4-208	ENST00000508342	PPP6R1	Q9UPN7	881 aa		4.47	□□□□□ -1.69
NEDD4-208	ENST00000508342	TOP2A	P11388	1531 aa	Known RBP	4.46	□□□□□ -1.69
NEDD4-208	ENST00000508342	ATAD2B	Q9ULI0	1458 aa		4.46	□□□□□ -1.69
NEDD4-208	ENST00000508342	KCNH8	Q96L42	1107 aa		4.46	□□□□□ -1.69
NEDD4-208	ENST00000508342	NES	P48681	1621 aa		4.46	□□□□□ -1.7
NEDD4-208	ENST00000508342	STAG3	Q9UJ98	1225 aa		4.46	□□□□□ -1.7
NEDD4-208	ENST00000508342	SENP3	Q9H4L4	574 aa	Predicted RBP	4.45	□□□□□ -1.7
NEDD4-208	ENST00000508342	ABCC8	Q09428	1581 aa		4.45	□□□□□ -1.7
NEDD4-208	ENST00000508342	MROH2B	Q7Z745	1585 aa		4.44	□□□□□ -1.7
NEDD4-208	ENST00000508342	SOGA1	O94964	1423 aa		4.44	□□□□□ -1.7
NEDD4-208	ENST00000508342	ZNF777	Q9ULD5	760 aa	Predicted RBP	4.43	□□□□□ -1.7
NEDD4-208	ENST00000508342	HMGXB3	Q12766	1538 aa		4.43	□□□□□ -1.7
NEDD4-208	ENST00000508342	TSPOAP1	O95153	1857 aa		4.43	□□□□□ -1.7
NEDD4-208	ENST00000508342	PBRM1	Q86U86	1689 aa		4.42	□□□□□ -1.7
NEDD4-208	ENST00000508342	CADPS	Q9ULU8	1353 aa		4.42	□□□□□ -1.7
NEDD4-208	ENST00000508342	SYNJ1	O43426	1573 aa		4.41	□□□□□ -1.7
NEDD4-208	ENST00000508342	CDK11A	Q9UQ88	783 aa	Predicted RBP	4.4	□□□□□ -1.7
NEDD4-208	ENST00000508342	IFT140	Q96RY7	1462 aa		4.4	□□□□□ -1.71
NEDD4-208	ENST00000508342	CCDC88B	A6NC98	1476 aa		4.4	□□□□□ -1.71
NEDD4-208	ENST00000508342	CHD1	O14646	1710 aa		4.39	□□□□□ -1.71
NEDD4-208	ENST00000508342	MLEC	Q14165	292 aa		4.39	□□□□□ -1.71
NEDD4-208	ENST00000508342	CARMIL2	Q6F5E8	1435 aa		4.38	□□□□□ -1.71
NEDD4-208	ENST00000508342	NCAPD3	P42695	1498 aa		4.38	□□□□□ -1.71
NEDD4-208	ENST00000508342	WRN	Q14191	1432 aa	Predicted RBP eCLIP	4.38	□□□□□ -1.71
NEDD4-208	ENST00000508342	ITGAE	P38570	1179 aa		4.38	□□□□□ -1.71
NEDD4-208	ENST00000508342	FAM69C	Q0P6D2	419 aa		4.38	□□□□□ -1.71
NEDD4-208	ENST00000508342	C14orf37	Q86TY3	774 aa		4.38	□□□□□ -1.71

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