RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 NISCHQ9Y2I1 1504 aa20.83■□□□□ 0.93
CLIP1-204ENST00000501271 CCDC180Q9P1Z9 1646 aa17.81■□□□□ 0.44
CLIP1-204ENST00000501271 ZCCHC6Q5VYS8 1495 aaKnown RBP17.62■□□□□ 0.41
CLIP1-204ENST00000501271 SHROOM4Q9ULL8 1493 aa17.62■□□□□ 0.41
CLIP1-204ENST00000501271 SUPT5HO00267 1087 aaKnown RBP17.21■□□□□ 0.35
CLIP1-204ENST00000501271 DCAF8L2P0C7V8 631 aa17.15■□□□□ 0.34
CLIP1-204ENST00000501271 DCAF1Q9Y4B6 1507 aa17.12■□□□□ 0.33
CLIP1-204ENST00000501271 CHIC1Q5VXU3 224 aa16.73■□□□□ 0.27
CLIP1-204ENST00000501271 MYO15BQ96JP2 1530 aa16.71■□□□□ 0.27
CLIP1-204ENST00000501271 ABCC9O60706 1549 aa16.64■□□□□ 0.25
CLIP1-204ENST00000501271 SCRIBQ14160 1630 aa16.63■□□□□ 0.25
CLIP1-204ENST00000501271 AEBP2Q6ZN18 517 aaPredicted RBP16.63■□□□□ 0.25
CLIP1-204ENST00000501271 NACADO15069 1562 aa16.44■□□□□ 0.22
CLIP1-204ENST00000501271 RSF1Q96T23 1441 aaPredicted RBP16.43■□□□□ 0.22
CLIP1-204ENST00000501271 RB1CC1Q8TDY2 1594 aa16.29■□□□□ 0.2
CLIP1-204ENST00000501271 CECR2Q9BXF3 1484 aa16.23■□□□□ 0.19
CLIP1-204ENST00000501271 LOC105371045A0A1W2PR82 267 aa16.2■□□□□ 0.18
CLIP1-204ENST00000501271 MROH2BQ7Z745 1585 aa16.19■□□□□ 0.18
CLIP1-204ENST00000501271 WIZO95785 1651 aa16.12■□□□□ 0.17
CLIP1-204ENST00000501271 PCGF6Q9BYE7 350 aa16.09■□□□□ 0.17
CLIP1-204ENST00000501271 HRCP23327 699 aa16.07■□□□□ 0.16
CLIP1-204ENST00000501271 TRIM41Q8WV44 630 aa16.05■□□□□ 0.16
CLIP1-204ENST00000501271 UNC13AQ9UPW8 1703 aa16.03■□□□□ 0.16
CLIP1-204ENST00000501271 BAZ1AQ9NRL2 1556 aaPredicted RBP16.03■□□□□ 0.16
CLIP1-204ENST00000501271 EIF4G1Q04637 1599 aaKnown RBP15.91■□□□□ 0.14
CLIP1-204ENST00000501271 SMARCA4P51532 1647 aa15.91■□□□□ 0.14
CLIP1-204ENST00000501271 FAM9AQ8IZU1 332 aaPredicted RBP15.89■□□□□ 0.13
CLIP1-204ENST00000501271 TOP2AP11388 1531 aaKnown RBP15.86■□□□□ 0.13
CLIP1-204ENST00000501271 TRIM26Q12899 539 aaPredicted RBP15.83■□□□□ 0.12
CLIP1-204ENST00000501271 SMARCA2P51531 1590 aa15.78■□□□□ 0.12
CLIP1-204ENST00000501271 BICRAQ9NZM4 1560 aa15.77■□□□□ 0.12
CLIP1-204ENST00000501271 CCDC88BA6NC98 1476 aa15.76■□□□□ 0.11
CLIP1-204ENST00000501271 PPARGC1BQ86YN6 1023 aaKnown RBP15.74■□□□□ 0.11
CLIP1-204ENST00000501271 EHMT2Q96KQ7 1210 aa15.74■□□□□ 0.11
CLIP1-204ENST00000501271 ABCC8Q09428 1581 aa15.71■□□□□ 0.11
CLIP1-204ENST00000501271 PABPN1Q86U42 306 aaKnown RBP eCLIP15.68■□□□□ 0.1
CLIP1-204ENST00000501271 PEG3Q9GZU2 1588 aa15.62■□□□□ 0.09
CLIP1-204ENST00000501271 SOGA1O94964 1423 aa15.51■□□□□ 0.07
CLIP1-204ENST00000501271 ATAD2BQ9ULI0 1458 aa15.48■□□□□ 0.07
CLIP1-204ENST00000501271 RUSC2Q8N2Y8 1516 aa15.45■□□□□ 0.06
CLIP1-204ENST00000501271 WRNQ14191 1432 aaPredicted RBP eCLIP15.43■□□□□ 0.06
CLIP1-204ENST00000501271 EEA1Q15075 1411 aa15.43■□□□□ 0.06
CLIP1-204ENST00000501271 BAZ1BQ9UIG0 1483 aaKnown RBP15.43■□□□□ 0.06
CLIP1-204ENST00000501271 ZEB1P37275 1124 aaPredicted RBP15.43■□□□□ 0.06
CLIP1-204ENST00000501271 CEP162Q5TB80 1403 aa15.41■□□□□ 0.06
CLIP1-204ENST00000501271 SYNJ1O43426 1573 aa15.41■□□□□ 0.06
CLIP1-204ENST00000501271 TNIKQ9UKE5 1360 aa15.38■□□□□ 0.05
CLIP1-204ENST00000501271 CSRNP3Q8WYN3 585 aa15.37■□□□□ 0.05
CLIP1-204ENST00000501271 GOLGA3Q08378 1498 aa15.33■□□□□ 0.04
CLIP1-204ENST00000501271 UBTFP17480 764 aaKnown RBP15.28■□□□□ 0.04
CLIP1-204ENST00000501271 KIF21BO75037 1637 aa15.28■□□□□ 0.04
CLIP1-204ENST00000501271 CEP164Q9UPV0 1460 aa15.25■□□□□ 0.03
CLIP1-204ENST00000501271 TTBK1Q5TCY1 1321 aaPredicted RBP15.23■□□□□ 0.03
CLIP1-204ENST00000501271 TOP2BQ02880 1626 aa15.23■□□□□ 0.03
CLIP1-204ENST00000501271 HMGXB3Q12766 1538 aa15.22■□□□□ 0.03
CLIP1-204ENST00000501271 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.21■□□□□ 0.02
CLIP1-204ENST00000501271 BIVM-ERCC5R4GMW8 1640 aa15.2■□□□□ 0.02
CLIP1-204ENST00000501271 NCAPD3P42695 1498 aa15.19■□□□□ 0.02
CLIP1-204ENST00000501271 RAPGEF2Q9Y4G8 1499 aa15.15■□□□□ 0.02
CLIP1-204ENST00000501271 CCER1Q8TC90 406 aaPredicted RBP15.15■□□□□ 0.02
CLIP1-204ENST00000501271 CLIP1P30622 1438 aa15.13■□□□□ 0.01
CLIP1-204ENST00000501271 CUX1P39880 1505 aa15.08■□□□□ 0
CLIP1-204ENST00000501271 VPS8Q8N3P4 1428 aa15.07■□□□□ 0
CLIP1-204ENST00000501271 CFTRP13569 1480 aa15.05■□□□□ 0
CLIP1-204ENST00000501271 ERICH3Q5RHP9 1530 aa15.04■□□□□ -0
CLIP1-204ENST00000501271 PRDM2Q13029 1718 aa15.03■□□□□ -0
CLIP1-204ENST00000501271 PRXQ9BXM0 1461 aa15.03■□□□□ -0
CLIP1-204ENST00000501271 RANGAP1P46060 587 aaPredicted RBP14.98□□□□□ -0.01
CLIP1-204ENST00000501271 KIF27Q86VH2 1401 aa14.95□□□□□ -0.02
CLIP1-204ENST00000501271 ARAP1Q96P48 1450 aa14.94□□□□□ -0.02
CLIP1-204ENST00000501271 APLP2Q06481 763 aa14.91□□□□□ -0.02
CLIP1-204ENST00000501271 HNRNPUL2Q1KMD3 747 aaKnown RBP14.9□□□□□ -0.02
CLIP1-204ENST00000501271 CC2D2AQ9P2K1 1620 aa14.88□□□□□ -0.03
CLIP1-204ENST00000501271 CADPSQ9ULU8 1353 aa14.87□□□□□ -0.03
CLIP1-204ENST00000501271 CUX2O14529 1486 aa14.83□□□□□ -0.03
CLIP1-204ENST00000501271 FGD5Q6ZNL6 1462 aa14.81□□□□□ -0.04
CLIP1-204ENST00000501271 ARHGAP35Q9NRY4 1499 aa14.81□□□□□ -0.04
CLIP1-204ENST00000501271 DIEXFQ68CQ4 756 aaKnown RBP14.81□□□□□ -0.04
CLIP1-204ENST00000501271 IGF1RP08069 1367 aa14.79□□□□□ -0.04
CLIP1-204ENST00000501271 KANK4Q5T7N3 995 aaPredicted RBP14.78□□□□□ -0.04
CLIP1-204ENST00000501271 FANCD2Q9BXW9 1451 aa14.75□□□□□ -0.05
CLIP1-204ENST00000501271 SCAF1Q9H7N4 1312 aaKnown RBP14.75□□□□□ -0.05
CLIP1-204ENST00000501271 ZNF316A6NFI3 1004 aaPredicted RBP14.73□□□□□ -0.05
CLIP1-204ENST00000501271 CARMIL1Q5VZK9 1371 aa14.72□□□□□ -0.05
CLIP1-204ENST00000501271 RRBP1Q9P2E9 1410 aaKnown RBP14.72□□□□□ -0.05
CLIP1-204ENST00000501271 DNMBPQ6XZF7 1577 aa14.7□□□□□ -0.06
CLIP1-204ENST00000501271 NESP48681 1621 aa14.67□□□□□ -0.06
CLIP1-204ENST00000501271 TOPBP1Q92547 1522 aa14.66□□□□□ -0.06
CLIP1-204ENST00000501271 TIAM1Q13009 1591 aa14.66□□□□□ -0.06
CLIP1-204ENST00000501271 RAD54L2Q9Y4B4 1467 aa14.66□□□□□ -0.06
CLIP1-204ENST00000501271 DHX57Q6P158 1386 aaKnown RBP14.66□□□□□ -0.06
CLIP1-204ENST00000501271 POLA1P09884 1462 aaPredicted RBP14.65□□□□□ -0.06
CLIP1-204ENST00000501271 ABCA10Q8WWZ4 1543 aa14.64□□□□□ -0.07
CLIP1-204ENST00000501271 ACIN1Q9UKV3 1341 aaKnown RBP14.64□□□□□ -0.07
CLIP1-204ENST00000501271 CCNB3Q8WWL7 1395 aa14.63□□□□□ -0.07
CLIP1-204ENST00000501271 NEUROD1Q13562 356 aa14.63□□□□□ -0.07
CLIP1-204ENST00000501271 MAP3K1Q13233 1512 aa14.62□□□□□ -0.07
CLIP1-204ENST00000501271 CLSPNQ9HAW4 1339 aa14.61□□□□□ -0.07
CLIP1-204ENST00000501271 PCF11O94913 1555 aaKnown RBP14.59□□□□□ -0.07
CLIP1-204ENST00000501271 CFAP43Q8NDM7 1665 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms