RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 NISCHQ9Y2I1 1504 aa23.53■■□□□ 1.36
CHMP3-209ENST00000494623 SHROOM4Q9ULL8 1493 aa20.04■□□□□ 0.8
CHMP3-209ENST00000494623 CCDC180Q9P1Z9 1646 aa20.01■□□□□ 0.79
CHMP3-209ENST00000494623 ZCCHC6Q5VYS8 1495 aaKnown RBP19.85■□□□□ 0.77
CHMP3-209ENST00000494623 DCAF8L2P0C7V8 631 aa19.71■□□□□ 0.75
CHMP3-209ENST00000494623 SUPT5HO00267 1087 aaKnown RBP19.62■□□□□ 0.73
CHMP3-209ENST00000494623 DCAF1Q9Y4B6 1507 aa19.27■□□□□ 0.68
CHMP3-209ENST00000494623 CHIC1Q5VXU3 224 aa18.97■□□□□ 0.63
CHMP3-209ENST00000494623 SCRIBQ14160 1630 aa18.79■□□□□ 0.6
CHMP3-209ENST00000494623 MYO15BQ96JP2 1530 aa18.79■□□□□ 0.6
CHMP3-209ENST00000494623 ABCC9O60706 1549 aa18.76■□□□□ 0.59
CHMP3-209ENST00000494623 RSF1Q96T23 1441 aaPredicted RBP18.59■□□□□ 0.57
CHMP3-209ENST00000494623 NACADO15069 1562 aa18.58■□□□□ 0.57
CHMP3-209ENST00000494623 LOC105371045A0A1W2PR82 267 aa18.44■□□□□ 0.54
CHMP3-209ENST00000494623 CECR2Q9BXF3 1484 aa18.39■□□□□ 0.53
CHMP3-209ENST00000494623 RB1CC1Q8TDY2 1594 aa18.32■□□□□ 0.52
CHMP3-209ENST00000494623 MROH2BQ7Z745 1585 aa18.29■□□□□ 0.52
CHMP3-209ENST00000494623 TRIM41Q8WV44 630 aa18.29■□□□□ 0.52
CHMP3-209ENST00000494623 PCGF6Q9BYE7 350 aa18.27■□□□□ 0.51
CHMP3-209ENST00000494623 WIZO95785 1651 aa18.18■□□□□ 0.5
CHMP3-209ENST00000494623 FAM9AQ8IZU1 332 aaPredicted RBP18.15■□□□□ 0.5
CHMP3-209ENST00000494623 HRCP23327 699 aa18.12■□□□□ 0.49
CHMP3-209ENST00000494623 BAZ1AQ9NRL2 1556 aaPredicted RBP18.07■□□□□ 0.48
CHMP3-209ENST00000494623 EHMT2Q96KQ7 1210 aa18.02■□□□□ 0.48
CHMP3-209ENST00000494623 UNC13AQ9UPW8 1703 aa17.98■□□□□ 0.47
CHMP3-209ENST00000494623 PABPN1Q86U42 306 aaKnown RBP eCLIP17.98■□□□□ 0.47
CHMP3-209ENST00000494623 TRIM26Q12899 539 aaPredicted RBP17.93■□□□□ 0.46
CHMP3-209ENST00000494623 SMARCA4P51532 1647 aa17.93■□□□□ 0.46
CHMP3-209ENST00000494623 TOP2AP11388 1531 aaKnown RBP17.88■□□□□ 0.45
CHMP3-209ENST00000494623 CCDC88BA6NC98 1476 aa17.85■□□□□ 0.45
CHMP3-209ENST00000494623 PPARGC1BQ86YN6 1023 aaKnown RBP17.8■□□□□ 0.44
CHMP3-209ENST00000494623 BICRAQ9NZM4 1560 aa17.8■□□□□ 0.44
CHMP3-209ENST00000494623 EIF4G1Q04637 1599 aaKnown RBP17.8■□□□□ 0.44
CHMP3-209ENST00000494623 SMARCA2P51531 1590 aa17.78■□□□□ 0.44
CHMP3-209ENST00000494623 ABCC8Q09428 1581 aa17.73■□□□□ 0.43
CHMP3-209ENST00000494623 SOGA1O94964 1423 aa17.57■□□□□ 0.4
CHMP3-209ENST00000494623 PEG3Q9GZU2 1588 aa17.57■□□□□ 0.4
CHMP3-209ENST00000494623 ATAD2BQ9ULI0 1458 aa17.54■□□□□ 0.4
CHMP3-209ENST00000494623 CSRNP3Q8WYN3 585 aa17.5■□□□□ 0.39
CHMP3-209ENST00000494623 RUSC2Q8N2Y8 1516 aa17.49■□□□□ 0.39
CHMP3-209ENST00000494623 BAZ1BQ9UIG0 1483 aaKnown RBP17.49■□□□□ 0.39
CHMP3-209ENST00000494623 ZEB1P37275 1124 aaPredicted RBP17.47■□□□□ 0.39
CHMP3-209ENST00000494623 WRNQ14191 1432 aaPredicted RBP eCLIP17.47■□□□□ 0.39
CHMP3-209ENST00000494623 UBTFP17480 764 aaKnown RBP17.45■□□□□ 0.38
CHMP3-209ENST00000494623 EEA1Q15075 1411 aa17.43■□□□□ 0.38
CHMP3-209ENST00000494623 CEP162Q5TB80 1403 aa17.41■□□□□ 0.38
CHMP3-209ENST00000494623 TNIKQ9UKE5 1360 aa17.4■□□□□ 0.38
CHMP3-209ENST00000494623 TTBK1Q5TCY1 1321 aaPredicted RBP17.38■□□□□ 0.37
CHMP3-209ENST00000494623 SYNJ1O43426 1573 aa17.35■□□□□ 0.37
CHMP3-209ENST00000494623 GOLGA3Q08378 1498 aa17.31■□□□□ 0.36
CHMP3-209ENST00000494623 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.27■□□□□ 0.36
CHMP3-209ENST00000494623 CEP164Q9UPV0 1460 aa17.23■□□□□ 0.35
CHMP3-209ENST00000494623 CCER1Q8TC90 406 aaPredicted RBP17.22■□□□□ 0.35
CHMP3-209ENST00000494623 NCAPD3P42695 1498 aa17.22■□□□□ 0.35
CHMP3-209ENST00000494623 RANGAP1P46060 587 aaPredicted RBP17.17■□□□□ 0.34
CHMP3-209ENST00000494623 KIF21BO75037 1637 aa17.16■□□□□ 0.34
CHMP3-209ENST00000494623 HMGXB3Q12766 1538 aa17.16■□□□□ 0.34
CHMP3-209ENST00000494623 TOP2BQ02880 1626 aa17.14■□□□□ 0.34
CHMP3-209ENST00000494623 RAPGEF2Q9Y4G8 1499 aa17.13■□□□□ 0.33
CHMP3-209ENST00000494623 CLIP1P30622 1438 aa17.13■□□□□ 0.33
CHMP3-209ENST00000494623 BIVM-ERCC5R4GMW8 1640 aa17.06■□□□□ 0.32
CHMP3-209ENST00000494623 APLP2Q06481 763 aa17.04■□□□□ 0.32
CHMP3-209ENST00000494623 CFTRP13569 1480 aa17.04■□□□□ 0.32
CHMP3-209ENST00000494623 CUX1P39880 1505 aa17.03■□□□□ 0.32
CHMP3-209ENST00000494623 VPS8Q8N3P4 1428 aa17.01■□□□□ 0.31
CHMP3-209ENST00000494623 HNRNPUL2Q1KMD3 747 aaKnown RBP16.98■□□□□ 0.31
CHMP3-209ENST00000494623 PRXQ9BXM0 1461 aa16.97■□□□□ 0.31
CHMP3-209ENST00000494623 KIF27Q86VH2 1401 aa16.96■□□□□ 0.31
CHMP3-209ENST00000494623 ERICH3Q5RHP9 1530 aa16.91■□□□□ 0.3
CHMP3-209ENST00000494623 CADPSQ9ULU8 1353 aa16.91■□□□□ 0.3
CHMP3-209ENST00000494623 CC2D2AQ9P2K1 1620 aa16.85■□□□□ 0.29
CHMP3-209ENST00000494623 ARAP1Q96P48 1450 aa16.83■□□□□ 0.29
CHMP3-209ENST00000494623 CUX2O14529 1486 aa16.83■□□□□ 0.28
CHMP3-209ENST00000494623 KANK4Q5T7N3 995 aaPredicted RBP16.8■□□□□ 0.28
CHMP3-209ENST00000494623 PRDM2Q13029 1718 aa16.8■□□□□ 0.28
CHMP3-209ENST00000494623 IGF1RP08069 1367 aa16.8■□□□□ 0.28
CHMP3-209ENST00000494623 DIEXFQ68CQ4 756 aaKnown RBP16.78■□□□□ 0.28
CHMP3-209ENST00000494623 FGD5Q6ZNL6 1462 aa16.77■□□□□ 0.27
CHMP3-209ENST00000494623 CARMIL1Q5VZK9 1371 aa16.73■□□□□ 0.27
CHMP3-209ENST00000494623 FANCD2Q9BXW9 1451 aa16.73■□□□□ 0.27
CHMP3-209ENST00000494623 ARHGAP35Q9NRY4 1499 aa16.73■□□□□ 0.27
CHMP3-209ENST00000494623 ZNF316A6NFI3 1004 aaPredicted RBP16.7■□□□□ 0.26
CHMP3-209ENST00000494623 NESP48681 1621 aa16.66■□□□□ 0.26
CHMP3-209ENST00000494623 RAD54L2Q9Y4B4 1467 aa16.64■□□□□ 0.25
CHMP3-209ENST00000494623 P3H3Q8IVL6 736 aa16.62■□□□□ 0.25
CHMP3-209ENST00000494623 ITGAEP38570 1179 aa16.61■□□□□ 0.25
CHMP3-209ENST00000494623 SCAF1Q9H7N4 1312 aaKnown RBP16.6■□□□□ 0.25
CHMP3-209ENST00000494623 TOPBP1Q92547 1522 aa16.59■□□□□ 0.25
CHMP3-209ENST00000494623 DNMBPQ6XZF7 1577 aa16.59■□□□□ 0.25
CHMP3-209ENST00000494623 RRBP1Q9P2E9 1410 aaKnown RBP16.58■□□□□ 0.25
CHMP3-209ENST00000494623 POLA1P09884 1462 aaPredicted RBP16.58■□□□□ 0.24
CHMP3-209ENST00000494623 ATP1B4Q9UN42 357 aaPredicted RBP16.57■□□□□ 0.24
CHMP3-209ENST00000494623 CCNB3Q8WWL7 1395 aa16.57■□□□□ 0.24
CHMP3-209ENST00000494623 DHX57Q6P158 1386 aaKnown RBP16.55■□□□□ 0.24
CHMP3-209ENST00000494623 ABCA10Q8WWZ4 1543 aa16.55■□□□□ 0.24
CHMP3-209ENST00000494623 DNAJC5BQ9UF47 199 aa16.55■□□□□ 0.24
CHMP3-209ENST00000494623 ACIN1Q9UKV3 1341 aaKnown RBP16.52■□□□□ 0.23
CHMP3-209ENST00000494623 NEUROD1Q13562 356 aa16.52■□□□□ 0.23
CHMP3-209ENST00000494623 CLSPNQ9HAW4 1339 aa16.5■□□□□ 0.23
CHMP3-209ENST00000494623 TIAM1Q13009 1591 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms