RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 NISCHQ9Y2I1 1504 aa34.59■■■■□ 3.13
CCDC88B-210ENST00000494566 SHROOM4Q9ULL8 1493 aa29.7■■■□□ 2.34
CCDC88B-210ENST00000494566 CCDC180Q9P1Z9 1646 aa29.37■■■□□ 2.29
CCDC88B-210ENST00000494566 ZCCHC6Q5VYS8 1495 aaKnown RBP29.2■■■□□ 2.26
CCDC88B-210ENST00000494566 DCAF8L2P0C7V8 631 aa29.12■■■□□ 2.25
CCDC88B-210ENST00000494566 SUPT5HO00267 1087 aaKnown RBP28.99■■■□□ 2.23
CCDC88B-210ENST00000494566 DCAF1Q9Y4B6 1507 aa28.2■■■□□ 2.1
CCDC88B-210ENST00000494566 CHIC1Q5VXU3 224 aa27.93■■■□□ 2.06
CCDC88B-210ENST00000494566 MYO15BQ96JP2 1530 aa27.84■■■□□ 2.05
CCDC88B-210ENST00000494566 SCRIBQ14160 1630 aa27.77■■■□□ 2.04
CCDC88B-210ENST00000494566 ABCC9O60706 1549 aa27.71■■■□□ 2.03
CCDC88B-210ENST00000494566 PCGF6Q9BYE7 350 aa27.39■■□□□ 1.98
CCDC88B-210ENST00000494566 RSF1Q96T23 1441 aaPredicted RBP27.36■■□□□ 1.97
CCDC88B-210ENST00000494566 LOC105371045A0A1W2PR82 267 aa27.25■■□□□ 1.95
CCDC88B-210ENST00000494566 NACADO15069 1562 aa27.24■■□□□ 1.95
CCDC88B-210ENST00000494566 PPARGC1BQ86YN6 1023 aaKnown RBP27.2■■□□□ 1.95
CCDC88B-210ENST00000494566 HRCP23327 699 aa27.16■■□□□ 1.94
CCDC88B-210ENST00000494566 CECR2Q9BXF3 1484 aa27.14■■□□□ 1.94
CCDC88B-210ENST00000494566 RB1CC1Q8TDY2 1594 aa27.1■■□□□ 1.93
CCDC88B-210ENST00000494566 MROH2BQ7Z745 1585 aa26.98■■□□□ 1.91
CCDC88B-210ENST00000494566 TRIM41Q8WV44 630 aa26.89■■□□□ 1.9
CCDC88B-210ENST00000494566 FAM9AQ8IZU1 332 aaPredicted RBP26.86■■□□□ 1.89
CCDC88B-210ENST00000494566 WIZO95785 1651 aa26.85■■□□□ 1.89
CCDC88B-210ENST00000494566 EHMT2Q96KQ7 1210 aa26.83■■□□□ 1.89
CCDC88B-210ENST00000494566 UNC13AQ9UPW8 1703 aa26.59■■□□□ 1.85
CCDC88B-210ENST00000494566 PABPN1Q86U42 306 aaKnown RBP eCLIP26.55■■□□□ 1.84
CCDC88B-210ENST00000494566 BAZ1AQ9NRL2 1556 aaPredicted RBP26.55■■□□□ 1.84
CCDC88B-210ENST00000494566 SMARCA4P51532 1647 aa26.4■■□□□ 1.82
CCDC88B-210ENST00000494566 TRIM26Q12899 539 aaPredicted RBP26.33■■□□□ 1.81
CCDC88B-210ENST00000494566 TOP2AP11388 1531 aaKnown RBP26.29■■□□□ 1.8
CCDC88B-210ENST00000494566 CCDC88BA6NC98 1476 aa26.27■■□□□ 1.8
CCDC88B-210ENST00000494566 EIF4G1Q04637 1599 aaKnown RBP26.25■■□□□ 1.79
CCDC88B-210ENST00000494566 BICRAQ9NZM4 1560 aa26.24■■□□□ 1.79
CCDC88B-210ENST00000494566 ABCC8Q09428 1581 aa26.24■■□□□ 1.79
CCDC88B-210ENST00000494566 SMARCA2P51531 1590 aa26.19■■□□□ 1.78
CCDC88B-210ENST00000494566 TTBK1Q5TCY1 1321 aaPredicted RBP25.96■■□□□ 1.75
CCDC88B-210ENST00000494566 SOGA1O94964 1423 aa25.93■■□□□ 1.74
CCDC88B-210ENST00000494566 RUSC2Q8N2Y8 1516 aa25.85■■□□□ 1.73
CCDC88B-210ENST00000494566 ATAD2BQ9ULI0 1458 aa25.79■■□□□ 1.72
CCDC88B-210ENST00000494566 PEG3Q9GZU2 1588 aa25.77■■□□□ 1.72
CCDC88B-210ENST00000494566 BAZ1BQ9UIG0 1483 aaKnown RBP25.73■■□□□ 1.71
CCDC88B-210ENST00000494566 WRNQ14191 1432 aaPredicted RBP eCLIP25.7■■□□□ 1.7
CCDC88B-210ENST00000494566 UBTFP17480 764 aaKnown RBP25.7■■□□□ 1.7
CCDC88B-210ENST00000494566 CSRNP3Q8WYN3 585 aa25.7■■□□□ 1.7
CCDC88B-210ENST00000494566 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.67■■□□□ 1.7
CCDC88B-210ENST00000494566 CEP162Q5TB80 1403 aa25.65■■□□□ 1.7
CCDC88B-210ENST00000494566 SYNJ1O43426 1573 aa25.62■■□□□ 1.69
CCDC88B-210ENST00000494566 ZEB1P37275 1124 aaPredicted RBP25.56■■□□□ 1.68
CCDC88B-210ENST00000494566 TNIKQ9UKE5 1360 aa25.53■■□□□ 1.68
CCDC88B-210ENST00000494566 SCAF1Q9H7N4 1312 aaKnown RBP25.52■■□□□ 1.68
CCDC88B-210ENST00000494566 EEA1Q15075 1411 aa25.5■■□□□ 1.67
CCDC88B-210ENST00000494566 CCER1Q8TC90 406 aaPredicted RBP25.47■■□□□ 1.67
CCDC88B-210ENST00000494566 RANGAP1P46060 587 aaPredicted RBP25.46■■□□□ 1.67
CCDC88B-210ENST00000494566 GOLGA3Q08378 1498 aa25.44■■□□□ 1.66
CCDC88B-210ENST00000494566 CEP164Q9UPV0 1460 aa25.31■■□□□ 1.64
CCDC88B-210ENST00000494566 RAPGEF2Q9Y4G8 1499 aa25.28■■□□□ 1.64
CCDC88B-210ENST00000494566 NCAPD3P42695 1498 aa25.25■■□□□ 1.63
CCDC88B-210ENST00000494566 KIF21BO75037 1637 aa25.22■■□□□ 1.63
CCDC88B-210ENST00000494566 TOP2BQ02880 1626 aa25.22■■□□□ 1.63
CCDC88B-210ENST00000494566 CLIP1P30622 1438 aa25.21■■□□□ 1.63
CCDC88B-210ENST00000494566 HMGXB3Q12766 1538 aa25.19■■□□□ 1.62
CCDC88B-210ENST00000494566 NEUROD1Q13562 356 aa25.13■■□□□ 1.61
CCDC88B-210ENST00000494566 CUX1P39880 1505 aa25.11■■□□□ 1.61
CCDC88B-210ENST00000494566 BIVM-ERCC5R4GMW8 1640 aa25.1■■□□□ 1.61
CCDC88B-210ENST00000494566 HNRNPUL2Q1KMD3 747 aaKnown RBP25.06■■□□□ 1.6
CCDC88B-210ENST00000494566 DIEXFQ68CQ4 756 aaKnown RBP25.04■■□□□ 1.6
CCDC88B-210ENST00000494566 CFTRP13569 1480 aa25.03■■□□□ 1.6
CCDC88B-210ENST00000494566 VPS8Q8N3P4 1428 aa25.02■■□□□ 1.6
CCDC88B-210ENST00000494566 YTHDC1Q96MU7 727 aaKnown RBP25.02■■□□□ 1.6
CCDC88B-210ENST00000494566 APLP2Q06481 763 aa24.99■■□□□ 1.59
CCDC88B-210ENST00000494566 ACIN1Q9UKV3 1341 aaKnown RBP24.94■■□□□ 1.58
CCDC88B-210ENST00000494566 GTF3C3Q9Y5Q9 886 aa24.94■■□□□ 1.58
CCDC88B-210ENST00000494566 PRXQ9BXM0 1461 aa24.93■■□□□ 1.58
CCDC88B-210ENST00000494566 KIF27Q86VH2 1401 aa24.89■■□□□ 1.58
CCDC88B-210ENST00000494566 CC2D2AQ9P2K1 1620 aa24.84■■□□□ 1.57
CCDC88B-210ENST00000494566 ERICH3Q5RHP9 1530 aa24.83■■□□□ 1.57
CCDC88B-210ENST00000494566 CADPSQ9ULU8 1353 aa24.83■■□□□ 1.56
CCDC88B-210ENST00000494566 ARAP1Q96P48 1450 aa24.82■■□□□ 1.56
CCDC88B-210ENST00000494566 CUX2O14529 1486 aa24.79■■□□□ 1.56
CCDC88B-210ENST00000494566 KANK4Q5T7N3 995 aaPredicted RBP24.79■■□□□ 1.56
CCDC88B-210ENST00000494566 PRDM2Q13029 1718 aa24.73■■□□□ 1.55
CCDC88B-210ENST00000494566 PELP1Q8IZL8 1130 aaKnown RBP24.72■■□□□ 1.55
CCDC88B-210ENST00000494566 FGD5Q6ZNL6 1462 aa24.71■■□□□ 1.55
CCDC88B-210ENST00000494566 CENPBP07199 599 aaPredicted RBP24.68■■□□□ 1.54
CCDC88B-210ENST00000494566 IGF1RP08069 1367 aa24.68■■□□□ 1.54
CCDC88B-210ENST00000494566 ARHGAP35Q9NRY4 1499 aa24.65■■□□□ 1.54
CCDC88B-210ENST00000494566 NESP48681 1621 aa24.65■■□□□ 1.54
CCDC88B-210ENST00000494566 FANCD2Q9BXW9 1451 aa24.62■■□□□ 1.53
CCDC88B-210ENST00000494566 ZNF316A6NFI3 1004 aaPredicted RBP24.59■■□□□ 1.53
CCDC88B-210ENST00000494566 CARMIL1Q5VZK9 1371 aa24.59■■□□□ 1.53
CCDC88B-210ENST00000494566 P3H3Q8IVL6 736 aa24.57■■□□□ 1.52
CCDC88B-210ENST00000494566 RAD54L2Q9Y4B4 1467 aa24.56■■□□□ 1.52
CCDC88B-210ENST00000494566 MIER1Q8N108 512 aa24.56■■□□□ 1.52
CCDC88B-210ENST00000494566 ITGAEP38570 1179 aa24.55■■□□□ 1.52
CCDC88B-210ENST00000494566 DNAJC5BQ9UF47 199 aa24.55■■□□□ 1.52
CCDC88B-210ENST00000494566 ATP1B4Q9UN42 357 aaPredicted RBP24.47■■□□□ 1.51
CCDC88B-210ENST00000494566 POLA1P09884 1462 aaPredicted RBP24.43■■□□□ 1.5
CCDC88B-210ENST00000494566 TOPBP1Q92547 1522 aa24.42■■□□□ 1.5
CCDC88B-210ENST00000494566 DNMBPQ6XZF7 1577 aa24.39■■□□□ 1.5
CCDC88B-210ENST00000494566 DHX57Q6P158 1386 aaKnown RBP24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms