RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 AEBP2Q6ZN18 517 aaPredicted RBP30.89■■■□□ 2.54
COL6A3-214ENST00000493608 CHIC1Q5VXU3 224 aa29.5■■■□□ 2.31
COL6A3-214ENST00000493608 SENP3Q9H4L4 574 aaPredicted RBP26.23■■□□□ 1.79
COL6A3-214ENST00000493608 NISCHQ9Y2I1 1504 aa26.18■■□□□ 1.78
COL6A3-214ENST00000493608 PHF23Q9BUL5 403 aaPredicted RBP25.95■■□□□ 1.74
COL6A3-214ENST00000493608 FOXD1Q16676 465 aa24.47■■□□□ 1.51
COL6A3-214ENST00000493608 PLPPR3Q6T4P5 718 aa23.63■■□□□ 1.37
COL6A3-214ENST00000493608 CCDC180Q9P1Z9 1646 aa23.32■■□□□ 1.32
COL6A3-214ENST00000493608 ABCC9O60706 1549 aa23.18■■□□□ 1.3
COL6A3-214ENST00000493608 PPP6R1Q9UPN7 881 aa23.07■■□□□ 1.28
COL6A3-214ENST00000493608 ADRA2BP18089 450 aa22.96■■□□□ 1.27
COL6A3-214ENST00000493608 PIAS4Q8N2W9 510 aaPredicted RBP22.84■■□□□ 1.25
COL6A3-214ENST00000493608 MSH5O43196 834 aa22.76■■□□□ 1.23
COL6A3-214ENST00000493608 DCAF8L2P0C7V8 631 aa22.16■■□□□ 1.14
COL6A3-214ENST00000493608 RB1CC1Q8TDY2 1594 aa22.1■■□□□ 1.13
COL6A3-214ENST00000493608 NACADO15069 1562 aa22■■□□□ 1.11
COL6A3-214ENST00000493608 POTEDQ86YR6 584 aa21.89■■□□□ 1.09
COL6A3-214ENST00000493608 ZCCHC6Q5VYS8 1495 aaKnown RBP21.72■■□□□ 1.07
COL6A3-214ENST00000493608 MYO15BQ96JP2 1530 aa21.72■■□□□ 1.07
COL6A3-214ENST00000493608 PABPN1Q86U42 306 aaKnown RBP eCLIP21.69■■□□□ 1.06
COL6A3-214ENST00000493608 UNC13AQ9UPW8 1703 aa21.68■■□□□ 1.06
COL6A3-214ENST00000493608 DCAF1Q9Y4B6 1507 aa21.56■■□□□ 1.04
COL6A3-214ENST00000493608 DNAJC5BQ9UF47 199 aa21.56■■□□□ 1.04
COL6A3-214ENST00000493608 BICRAQ9NZM4 1560 aa21.48■■□□□ 1.03
COL6A3-214ENST00000493608 SCRIBQ14160 1630 aa21.37■■□□□ 1.01
COL6A3-214ENST00000493608 SHROOM4Q9ULL8 1493 aa21.07■□□□□ 0.96
COL6A3-214ENST00000493608 MAPK8IP2Q13387 824 aaPredicted RBP21.04■□□□□ 0.96
COL6A3-214ENST00000493608 SCAF1Q9H7N4 1312 aaKnown RBP20.94■□□□□ 0.94
COL6A3-214ENST00000493608 EIF4G1Q04637 1599 aaKnown RBP20.92■□□□□ 0.94
COL6A3-214ENST00000493608 CC2D2AQ9P2K1 1620 aa20.92■□□□□ 0.94
COL6A3-214ENST00000493608 DMRT2Q9Y5R5 561 aa20.87■□□□□ 0.93
COL6A3-214ENST00000493608 CECR2Q9BXF3 1484 aa20.81■□□□□ 0.92
COL6A3-214ENST00000493608 PPP4R3CPQ6ZMV5 832 aa20.75■□□□□ 0.91
COL6A3-214ENST00000493608 SMARCA4P51532 1647 aa20.37■□□□□ 0.85
COL6A3-214ENST00000493608 ATAD2BQ9ULI0 1458 aa20.32■□□□□ 0.84
COL6A3-214ENST00000493608 NCAPD3P42695 1498 aa20.31■□□□□ 0.84
COL6A3-214ENST00000493608 CNKSR2Q8WXI2 1034 aa20.3■□□□□ 0.84
COL6A3-214ENST00000493608 BAZ1AQ9NRL2 1556 aaPredicted RBP20.28■□□□□ 0.84
COL6A3-214ENST00000493608 SMARCA2P51531 1590 aa20.25■□□□□ 0.83
COL6A3-214ENST00000493608 MROH2BQ7Z745 1585 aa20.21■□□□□ 0.83
COL6A3-214ENST00000493608 HOXD11P31277 338 aaPredicted RBP20.21■□□□□ 0.83
COL6A3-214ENST00000493608 HMGXB3Q12766 1538 aa20.17■□□□□ 0.82
COL6A3-214ENST00000493608 BAZ1BQ9UIG0 1483 aaKnown RBP20.15■□□□□ 0.82
COL6A3-214ENST00000493608 PEG3Q9GZU2 1588 aa20.12■□□□□ 0.81
COL6A3-214ENST00000493608 RNF216Q9NWF9 866 aaPredicted RBP20.08■□□□□ 0.81
COL6A3-214ENST00000493608 WIZO95785 1651 aa20.01■□□□□ 0.79
COL6A3-214ENST00000493608 NESP48681 1621 aa20.01■□□□□ 0.79
COL6A3-214ENST00000493608 ERCC6Q03468 1493 aa19.97■□□□□ 0.79
COL6A3-214ENST00000493608 NCBP3Q53F19 620 aaKnown RBP19.96■□□□□ 0.79
COL6A3-214ENST00000493608 RSF1Q96T23 1441 aaPredicted RBP19.88■□□□□ 0.77
COL6A3-214ENST00000493608 DCAF8L1A6NGE4 600 aa19.87■□□□□ 0.77
COL6A3-214ENST00000493608 LAMC3Q9Y6N6 1575 aa19.81■□□□□ 0.76
COL6A3-214ENST00000493608 CUX2O14529 1486 aa19.77■□□□□ 0.76
COL6A3-214ENST00000493608 NPM3O75607 178 aaKnown RBP19.75■□□□□ 0.75
COL6A3-214ENST00000493608 CADPSQ9ULU8 1353 aa19.74■□□□□ 0.75
COL6A3-214ENST00000493608 KIF21AQ7Z4S6 1674 aa19.74■□□□□ 0.75
COL6A3-214ENST00000493608 PDS5BQ9NTI5 1447 aa19.71■□□□□ 0.75
COL6A3-214ENST00000493608 TOP2AP11388 1531 aaKnown RBP19.7■□□□□ 0.74
COL6A3-214ENST00000493608 THOC2Q8NI27 1593 aaKnown RBP19.66■□□□□ 0.74
COL6A3-214ENST00000493608 KCNA4P22459 653 aa19.56■□□□□ 0.72
COL6A3-214ENST00000493608 CFTRP13569 1480 aa19.55■□□□□ 0.72
COL6A3-214ENST00000493608 DNAJC5Q9H3Z4 198 aa19.54■□□□□ 0.72
COL6A3-214ENST00000493608 CCDC88BA6NC98 1476 aa19.54■□□□□ 0.72
COL6A3-214ENST00000493608 FANCD2Q9BXW9 1451 aa19.53■□□□□ 0.72
COL6A3-214ENST00000493608 MRC2Q9UBG0 1479 aa19.53■□□□□ 0.72
COL6A3-214ENST00000493608 CEP164Q9UPV0 1460 aa19.5■□□□□ 0.71
COL6A3-214ENST00000493608 RNF39Q9H2S5 420 aa19.49■□□□□ 0.71
COL6A3-214ENST00000493608 WDR62O43379 1518 aa19.45■□□□□ 0.7
COL6A3-214ENST00000493608 PRDM2Q13029 1718 aa19.39■□□□□ 0.69
COL6A3-214ENST00000493608 CACNB1Q02641 598 aaPredicted RBP19.36■□□□□ 0.69
COL6A3-214ENST00000493608 URB2Q14146 1524 aaKnown RBP19.35■□□□□ 0.69
COL6A3-214ENST00000493608 SUPT5HO00267 1087 aaKnown RBP19.33■□□□□ 0.68
COL6A3-214ENST00000493608 C1QBPQ07021 282 aaKnown RBP19.18■□□□□ 0.66
COL6A3-214ENST00000493608 TOPBP1Q92547 1522 aa19.18■□□□□ 0.66
COL6A3-214ENST00000493608 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.15■□□□□ 0.66
COL6A3-214ENST00000493608 DNMBPQ6XZF7 1577 aa19.11■□□□□ 0.65
COL6A3-214ENST00000493608 ABCC8Q09428 1581 aa19.1■□□□□ 0.65
COL6A3-214ENST00000493608 ZNF608Q9ULD9 1512 aaPredicted RBP19.1■□□□□ 0.65
COL6A3-214ENST00000493608 IFT140Q96RY7 1462 aa19.09■□□□□ 0.65
COL6A3-214ENST00000493608 OSCARQ8IYS5 282 aa19.01■□□□□ 0.63
COL6A3-214ENST00000493608 POLA1P09884 1462 aaPredicted RBP19■□□□□ 0.63
COL6A3-214ENST00000493608 TARBP1Q13395 1621 aaKnown RBP18.99■□□□□ 0.63
COL6A3-214ENST00000493608 RAD54L2Q9Y4B4 1467 aa18.98■□□□□ 0.63
COL6A3-214ENST00000493608 AQRO60306 1485 aaKnown RBP eCLIP18.97■□□□□ 0.63
COL6A3-214ENST00000493608 EIF4G3O43432 1585 aaKnown RBP18.97■□□□□ 0.63
COL6A3-214ENST00000493608 CUX1P39880 1505 aa18.96■□□□□ 0.63
COL6A3-214ENST00000493608 SOGA1O94964 1423 aa18.96■□□□□ 0.63
COL6A3-214ENST00000493608 FGD5Q6ZNL6 1462 aa18.94■□□□□ 0.62
COL6A3-214ENST00000493608 TDRD9Q8NDG6 1382 aaKnown RBP18.91■□□□□ 0.62
COL6A3-214ENST00000493608 TRIM41Q8WV44 630 aa18.89■□□□□ 0.61
COL6A3-214ENST00000493608 U3KPZ7 1027 aaPredicted RBP18.86■□□□□ 0.61
COL6A3-214ENST00000493608 SLC4A2P04920 1241 aa18.85■□□□□ 0.61
COL6A3-214ENST00000493608 FBLN2P98095 1184 aa18.85■□□□□ 0.61
COL6A3-214ENST00000493608 CHD1O14646 1710 aa18.82■□□□□ 0.6
COL6A3-214ENST00000493608 WDR97A6NE52 1622 aa18.75■□□□□ 0.59
COL6A3-214ENST00000493608 SNAPC4Q5SXM2 1469 aa18.75■□□□□ 0.59
COL6A3-214ENST00000493608 WRNQ14191 1432 aaPredicted RBP eCLIP18.74■□□□□ 0.59
COL6A3-214ENST00000493608 SYNJ1O43426 1573 aa18.73■□□□□ 0.59
COL6A3-214ENST00000493608 GRIN2BQ13224 1484 aa18.71■□□□□ 0.59
COL6A3-214ENST00000493608 CHMP7Q8WUX9 453 aaPredicted RBP18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms