RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 AEBP2Q6ZN18 517 aaPredicted RBP19.59■□□□□ 0.73
SYNE1-229ENST00000490866 CHIC1Q5VXU3 224 aa19.02■□□□□ 0.64
SYNE1-229ENST00000490866 SENP3Q9H4L4 574 aaPredicted RBP16.81■□□□□ 0.28
SYNE1-229ENST00000490866 PHF23Q9BUL5 403 aaPredicted RBP16.63■□□□□ 0.25
SYNE1-229ENST00000490866 NISCHQ9Y2I1 1504 aa15.84■□□□□ 0.13
SYNE1-229ENST00000490866 FOXD1Q16676 465 aa15.53■□□□□ 0.08
SYNE1-229ENST00000490866 PLPPR3Q6T4P5 718 aa15.4■□□□□ 0.06
SYNE1-229ENST00000490866 PPP6R1Q9UPN7 881 aa14.73□□□□□ -0.05
SYNE1-229ENST00000490866 ADRA2BP18089 450 aa14.7□□□□□ -0.06
SYNE1-229ENST00000490866 PIAS4Q8N2W9 510 aaPredicted RBP14.6□□□□□ -0.07
SYNE1-229ENST00000490866 MSH5O43196 834 aa14.54□□□□□ -0.08
SYNE1-229ENST00000490866 CCDC180Q9P1Z9 1646 aa13.93□□□□□ -0.18
SYNE1-229ENST00000490866 SCAF1Q9H7N4 1312 aaKnown RBP13.65□□□□□ -0.22
SYNE1-229ENST00000490866 POTEDQ86YR6 584 aa13.51□□□□□ -0.25
SYNE1-229ENST00000490866 PPP4R3CPQ6ZMV5 832 aa13.48□□□□□ -0.25
SYNE1-229ENST00000490866 MAPK8IP2Q13387 824 aaPredicted RBP13.38□□□□□ -0.27
SYNE1-229ENST00000490866 DMRT2Q9Y5R5 561 aa13.36□□□□□ -0.27
SYNE1-229ENST00000490866 DCAF1Q9Y4B6 1507 aa13.23□□□□□ -0.29
SYNE1-229ENST00000490866 ZCCHC6Q5VYS8 1495 aaKnown RBP13.23□□□□□ -0.29
SYNE1-229ENST00000490866 CNKSR2Q8WXI2 1034 aa13.21□□□□□ -0.29
SYNE1-229ENST00000490866 MYO15BQ96JP2 1530 aa13.19□□□□□ -0.3
SYNE1-229ENST00000490866 NCBP3Q53F19 620 aaKnown RBP13.18□□□□□ -0.3
SYNE1-229ENST00000490866 ABCC9O60706 1549 aa13.15□□□□□ -0.3
SYNE1-229ENST00000490866 DCAF8L2P0C7V8 631 aa13.12□□□□□ -0.31
SYNE1-229ENST00000490866 NACADO15069 1562 aa13.07□□□□□ -0.32
SYNE1-229ENST00000490866 RNF216Q9NWF9 866 aaPredicted RBP13.02□□□□□ -0.33
SYNE1-229ENST00000490866 HOXD11P31277 338 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-229ENST00000490866 RB1CC1Q8TDY2 1594 aa12.97□□□□□ -0.33
SYNE1-229ENST00000490866 NPM3O75607 178 aaKnown RBP12.85□□□□□ -0.35
SYNE1-229ENST00000490866 KCNA4P22459 653 aa12.84□□□□□ -0.35
SYNE1-229ENST00000490866 DCAF8L1A6NGE4 600 aa12.7□□□□□ -0.38
SYNE1-229ENST00000490866 DNAJC5BQ9UF47 199 aa12.7□□□□□ -0.38
SYNE1-229ENST00000490866 SCRIBQ14160 1630 aa12.59□□□□□ -0.39
SYNE1-229ENST00000490866 SHROOM4Q9ULL8 1493 aa12.58□□□□□ -0.4
SYNE1-229ENST00000490866 UNC13AQ9UPW8 1703 aa12.48□□□□□ -0.41
SYNE1-229ENST00000490866 BICRAQ9NZM4 1560 aa12.39□□□□□ -0.43
SYNE1-229ENST00000490866 RNF39Q9H2S5 420 aa12.38□□□□□ -0.43
SYNE1-229ENST00000490866 PABPN1Q86U42 306 aaKnown RBP eCLIP12.37□□□□□ -0.43
SYNE1-229ENST00000490866 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.37□□□□□ -0.43
SYNE1-229ENST00000490866 BAZ1AQ9NRL2 1556 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-229ENST00000490866 C1QBPQ07021 282 aaKnown RBP12.28□□□□□ -0.44
SYNE1-229ENST00000490866 SLC4A1APQ9BWU0 796 aaKnown RBP12.25□□□□□ -0.45
SYNE1-229ENST00000490866 CACNB1Q02641 598 aaPredicted RBP12.2□□□□□ -0.46
SYNE1-229ENST00000490866 RSF1Q96T23 1441 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-229ENST00000490866 CECR2Q9BXF3 1484 aa12.18□□□□□ -0.46
SYNE1-229ENST00000490866 SUPT5HO00267 1087 aaKnown RBP12.17□□□□□ -0.46
SYNE1-229ENST00000490866 SLC4A2P04920 1241 aa12.17□□□□□ -0.46
SYNE1-229ENST00000490866 SMARCA4P51532 1647 aa12.15□□□□□ -0.46
SYNE1-229ENST00000490866 SMARCA2P51531 1590 aa12.12□□□□□ -0.47
SYNE1-229ENST00000490866 PEG3Q9GZU2 1588 aa12.12□□□□□ -0.47
SYNE1-229ENST00000490866 EIF4G1Q04637 1599 aaKnown RBP12.11□□□□□ -0.47
SYNE1-229ENST00000490866 MROH2BQ7Z745 1585 aa12.11□□□□□ -0.47
SYNE1-229ENST00000490866 U3KPZ7 1027 aaPredicted RBP12.09□□□□□ -0.47
SYNE1-229ENST00000490866 NCAPD3P42695 1498 aa12.06□□□□□ -0.48
SYNE1-229ENST00000490866 ATAD2BQ9ULI0 1458 aa12.04□□□□□ -0.48
SYNE1-229ENST00000490866 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-229ENST00000490866 HNRNPUL2Q1KMD3 747 aaKnown RBP12.04□□□□□ -0.48
SYNE1-229ENST00000490866 APLP2Q06481 763 aa12□□□□□ -0.49
SYNE1-229ENST00000490866 WIZO95785 1651 aa11.98□□□□□ -0.49
SYNE1-229ENST00000490866 HMGXB3Q12766 1538 aa11.98□□□□□ -0.49
SYNE1-229ENST00000490866 BAZ1BQ9UIG0 1483 aaKnown RBP11.98□□□□□ -0.49
SYNE1-229ENST00000490866 FOXD4L1Q9NU39 408 aa11.97□□□□□ -0.49
SYNE1-229ENST00000490866 TOP2AP11388 1531 aaKnown RBP11.96□□□□□ -0.49
SYNE1-229ENST00000490866 CC2D2AQ9P2K1 1620 aa11.94□□□□□ -0.5
SYNE1-229ENST00000490866 MYCNP04198 464 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-229ENST00000490866 SAMD1Q6SPF0 538 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-229ENST00000490866 CCDC88BA6NC98 1476 aa11.83□□□□□ -0.52
SYNE1-229ENST00000490866 CAPN15O75808 1086 aa11.8□□□□□ -0.52
SYNE1-229ENST00000490866 SPINK5Q9NQ38 1064 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-229ENST00000490866 ZBTB22O15209 634 aa11.77□□□□□ -0.53
SYNE1-229ENST00000490866 ZNF219Q9P2Y4 722 aaPredicted RBP11.77□□□□□ -0.53
SYNE1-229ENST00000490866 CADPSQ9ULU8 1353 aa11.73□□□□□ -0.53
SYNE1-229ENST00000490866 CFTRP13569 1480 aa11.7□□□□□ -0.54
SYNE1-229ENST00000490866 ATXN8OSP0DMR3 200 aa11.69□□□□□ -0.54
SYNE1-229ENST00000490866 DSG3P32926 999 aa11.67□□□□□ -0.54
SYNE1-229ENST00000490866 TRHP20396 242 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-229ENST00000490866 LAMC3Q9Y6N6 1575 aa11.66□□□□□ -0.54
SYNE1-229ENST00000490866 PDS5BQ9NTI5 1447 aa11.64□□□□□ -0.55
SYNE1-229ENST00000490866 TRIM41Q8WV44 630 aa11.61□□□□□ -0.55
SYNE1-229ENST00000490866 ABCC8Q09428 1581 aa11.58□□□□□ -0.55
SYNE1-229ENST00000490866 CSRNP3Q8WYN3 585 aa11.58□□□□□ -0.56
SYNE1-229ENST00000490866 PRDM2Q13029 1718 aa11.57□□□□□ -0.56
SYNE1-229ENST00000490866 EHMT2Q96KQ7 1210 aa11.53□□□□□ -0.56
SYNE1-229ENST00000490866 WRNQ14191 1432 aaPredicted RBP eCLIP11.52□□□□□ -0.56
SYNE1-229ENST00000490866 FANCD2Q9BXW9 1451 aa11.51□□□□□ -0.57
SYNE1-229ENST00000490866 ATF5Q9Y2D1 282 aaPredicted RBP11.5□□□□□ -0.57
SYNE1-229ENST00000490866 ABCB7O75027 752 aa11.48□□□□□ -0.57
SYNE1-229ENST00000490866 CEP164Q9UPV0 1460 aa11.48□□□□□ -0.57
SYNE1-229ENST00000490866 POLA2Q14181 598 aa11.46□□□□□ -0.57
SYNE1-229ENST00000490866 NESP48681 1621 aa11.44□□□□□ -0.58
SYNE1-229ENST00000490866 EEA1Q15075 1411 aa11.43□□□□□ -0.58
SYNE1-229ENST00000490866 TOP2BQ02880 1626 aa11.42□□□□□ -0.58
SYNE1-229ENST00000490866 ERCC6Q03468 1493 aa11.42□□□□□ -0.58
SYNE1-229ENST00000490866 BIVM-ERCC5R4GMW8 1640 aa11.39□□□□□ -0.59
SYNE1-229ENST00000490866 DNMBPQ6XZF7 1577 aa11.39□□□□□ -0.59
SYNE1-229ENST00000490866 ZBTB12Q9Y330 459 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-229ENST00000490866 MRC2Q9UBG0 1479 aa11.38□□□□□ -0.59
SYNE1-229ENST00000490866 TOPBP1Q92547 1522 aa11.35□□□□□ -0.59
SYNE1-229ENST00000490866 CUX1P39880 1505 aa11.35□□□□□ -0.59
SYNE1-229ENST00000490866 SYNJ1O43426 1573 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms