RNA–Protein interactions for RNA: ENST00000489678.1

ABCD4-214, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 5

Gene ABCD4, Length 3,008 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-214ENST00000489678 NISCHQ9Y2I1 1504 aa22.97■■□□□ 1.27
ABCD4-214ENST00000489678 DCAF8L2P0C7V8 631 aa20.27■□□□□ 0.83
ABCD4-214ENST00000489678 ABCC9O60706 1549 aa19.86■□□□□ 0.77
ABCD4-214ENST00000489678 CCDC180Q9P1Z9 1646 aa19.66■□□□□ 0.74
ABCD4-214ENST00000489678 SHROOM4Q9ULL8 1493 aa19.63■□□□□ 0.73
ABCD4-214ENST00000489678 ZCCHC6Q5VYS8 1495 aaKnown RBP19.16■□□□□ 0.66
ABCD4-214ENST00000489678 PABPN1Q86U42 306 aaKnown RBP eCLIP19■□□□□ 0.63
ABCD4-214ENST00000489678 SCRIBQ14160 1630 aa18.84■□□□□ 0.61
ABCD4-214ENST00000489678 SUPT5HO00267 1087 aaKnown RBP18.75■□□□□ 0.59
ABCD4-214ENST00000489678 RB1CC1Q8TDY2 1594 aa18.59■□□□□ 0.57
ABCD4-214ENST00000489678 NACADO15069 1562 aa18.56■□□□□ 0.56
ABCD4-214ENST00000489678 DCAF1Q9Y4B6 1507 aa18.48■□□□□ 0.55
ABCD4-214ENST00000489678 CECR2Q9BXF3 1484 aa18.28■□□□□ 0.52
ABCD4-214ENST00000489678 UNC13AQ9UPW8 1703 aa18.27■□□□□ 0.52
ABCD4-214ENST00000489678 MYO15BQ96JP2 1530 aa18.24■□□□□ 0.51
ABCD4-214ENST00000489678 BICRAQ9NZM4 1560 aa18.17■□□□□ 0.5
ABCD4-214ENST00000489678 DNAJC5BQ9UF47 199 aa18.03■□□□□ 0.48
ABCD4-214ENST00000489678 MROH2BQ7Z745 1585 aa17.98■□□□□ 0.47
ABCD4-214ENST00000489678 RSF1Q96T23 1441 aaPredicted RBP17.92■□□□□ 0.46
ABCD4-214ENST00000489678 WIZO95785 1651 aa17.83■□□□□ 0.44
ABCD4-214ENST00000489678 EHMT2Q96KQ7 1210 aa17.71■□□□□ 0.43
ABCD4-214ENST00000489678 EIF4G1Q04637 1599 aaKnown RBP17.7■□□□□ 0.42
ABCD4-214ENST00000489678 SMARCA4P51532 1647 aa17.68■□□□□ 0.42
ABCD4-214ENST00000489678 BAZ1AQ9NRL2 1556 aaPredicted RBP17.66■□□□□ 0.42
ABCD4-214ENST00000489678 CC2D2AQ9P2K1 1620 aa17.58■□□□□ 0.41
ABCD4-214ENST00000489678 ATAD2BQ9ULI0 1458 aa17.58■□□□□ 0.4
ABCD4-214ENST00000489678 BAZ1BQ9UIG0 1483 aaKnown RBP17.53■□□□□ 0.4
ABCD4-214ENST00000489678 FAM9AQ8IZU1 332 aaPredicted RBP17.5■□□□□ 0.39
ABCD4-214ENST00000489678 CCDC88BA6NC98 1476 aa17.43■□□□□ 0.38
ABCD4-214ENST00000489678 CHIC1Q5VXU3 224 aa17.37■□□□□ 0.37
ABCD4-214ENST00000489678 NESP48681 1621 aa17.34■□□□□ 0.37
ABCD4-214ENST00000489678 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
ABCD4-214ENST00000489678 TOP2AP11388 1531 aaKnown RBP17.31■□□□□ 0.36
ABCD4-214ENST00000489678 TRIM41Q8WV44 630 aa17.29■□□□□ 0.36
ABCD4-214ENST00000489678 NCAPD3P42695 1498 aa17.28■□□□□ 0.36
ABCD4-214ENST00000489678 ABCC8Q09428 1581 aa17.22■□□□□ 0.35
ABCD4-214ENST00000489678 LOC105371045A0A1W2PR82 267 aa17.14■□□□□ 0.33
ABCD4-214ENST00000489678 PEG3Q9GZU2 1588 aa17.14■□□□□ 0.33
ABCD4-214ENST00000489678 RANGAP1P46060 587 aaPredicted RBP17.12■□□□□ 0.33
ABCD4-214ENST00000489678 HMGXB3Q12766 1538 aa17.07■□□□□ 0.32
ABCD4-214ENST00000489678 CADPSQ9ULU8 1353 aa17.04■□□□□ 0.32
ABCD4-214ENST00000489678 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
ABCD4-214ENST00000489678 FANCD2Q9BXW9 1451 aa16.91■□□□□ 0.3
ABCD4-214ENST00000489678 CFTRP13569 1480 aa16.91■□□□□ 0.3
ABCD4-214ENST00000489678 WRNQ14191 1432 aaPredicted RBP eCLIP16.9■□□□□ 0.3
ABCD4-214ENST00000489678 RUSC2Q8N2Y8 1516 aa16.89■□□□□ 0.29
ABCD4-214ENST00000489678 SOGA1O94964 1423 aa16.88■□□□□ 0.29
ABCD4-214ENST00000489678 SYNJ1O43426 1573 aa16.82■□□□□ 0.28
ABCD4-214ENST00000489678 RAD54L2Q9Y4B4 1467 aa16.8■□□□□ 0.28
ABCD4-214ENST00000489678 TTBK1Q5TCY1 1321 aaPredicted RBP16.77■□□□□ 0.28
ABCD4-214ENST00000489678 TDRD9Q8NDG6 1382 aaKnown RBP16.77■□□□□ 0.28
ABCD4-214ENST00000489678 FBLN2P98095 1184 aa16.77■□□□□ 0.28
ABCD4-214ENST00000489678 CEP164Q9UPV0 1460 aa16.76■□□□□ 0.27
ABCD4-214ENST00000489678 CUX1P39880 1505 aa16.76■□□□□ 0.27
ABCD4-214ENST00000489678 PDS5BQ9NTI5 1447 aa16.76■□□□□ 0.27
ABCD4-214ENST00000489678 KIF21AQ7Z4S6 1674 aa16.76■□□□□ 0.27
ABCD4-214ENST00000489678 PPARGC1BQ86YN6 1023 aaKnown RBP16.74■□□□□ 0.27
ABCD4-214ENST00000489678 UBTFP17480 764 aaKnown RBP16.73■□□□□ 0.27
ABCD4-214ENST00000489678 URB2Q14146 1524 aaKnown RBP16.71■□□□□ 0.27
ABCD4-214ENST00000489678 FGD5Q6ZNL6 1462 aa16.68■□□□□ 0.26
ABCD4-214ENST00000489678 LAMC3Q9Y6N6 1575 aa16.65■□□□□ 0.26
ABCD4-214ENST00000489678 TOPBP1Q92547 1522 aa16.63■□□□□ 0.25
ABCD4-214ENST00000489678 CUX2O14529 1486 aa16.63■□□□□ 0.25
ABCD4-214ENST00000489678 AQRO60306 1485 aaKnown RBP eCLIP16.63■□□□□ 0.252e-8■■■■■ 35.6
ABCD4-214ENST00000489678 CSRNP3Q8WYN3 585 aa16.62■□□□□ 0.25
ABCD4-214ENST00000489678 P3H3Q8IVL6 736 aa16.6■□□□□ 0.25
ABCD4-214ENST00000489678 POLA1P09884 1462 aaPredicted RBP16.6■□□□□ 0.25
ABCD4-214ENST00000489678 ZNF608Q9ULD9 1512 aaPredicted RBP16.58■□□□□ 0.25
ABCD4-214ENST00000489678 MRC2Q9UBG0 1479 aa16.53■□□□□ 0.24
ABCD4-214ENST00000489678 ARID3CA6NKF2 412 aa16.51■□□□□ 0.23
ABCD4-214ENST00000489678 TOP2BQ02880 1626 aa16.51■□□□□ 0.23
ABCD4-214ENST00000489678 ATP1B4Q9UN42 357 aaPredicted RBP16.47■□□□□ 0.23
ABCD4-214ENST00000489678 DNMBPQ6XZF7 1577 aa16.46■□□□□ 0.22
ABCD4-214ENST00000489678 PCGF6Q9BYE7 350 aa16.44■□□□□ 0.22
ABCD4-214ENST00000489678 RAPGEF2Q9Y4G8 1499 aa16.43■□□□□ 0.22
ABCD4-214ENST00000489678 KIF27Q86VH2 1401 aa16.42■□□□□ 0.22
ABCD4-214ENST00000489678 IGF1RP08069 1367 aa16.41■□□□□ 0.22
ABCD4-214ENST00000489678 CHMP7Q8WUX9 453 aaPredicted RBP16.4■□□□□ 0.22
ABCD4-214ENST00000489678 PRDM2Q13029 1718 aa16.39■□□□□ 0.21
ABCD4-214ENST00000489678 THOC2Q8NI27 1593 aaKnown RBP16.37■□□□□ 0.21
ABCD4-214ENST00000489678 BIVM-ERCC5R4GMW8 1640 aa16.37■□□□□ 0.21
ABCD4-214ENST00000489678 CARMIL1Q5VZK9 1371 aa16.36■□□□□ 0.21
ABCD4-214ENST00000489678 GAPVD1Q14C86 1478 aa16.35■□□□□ 0.21
ABCD4-214ENST00000489678 HRCP23327 699 aa16.32■□□□□ 0.2
ABCD4-214ENST00000489678 WDR62O43379 1518 aa16.31■□□□□ 0.2
ABCD4-214ENST00000489678 SNAPC4Q5SXM2 1469 aa16.26■□□□□ 0.19
ABCD4-214ENST00000489678 ABCA10Q8WWZ4 1543 aa16.26■□□□□ 0.19
ABCD4-214ENST00000489678 TARBP1Q13395 1621 aaKnown RBP16.25■□□□□ 0.19
ABCD4-214ENST00000489678 IFT140Q96RY7 1462 aa16.22■□□□□ 0.19
ABCD4-214ENST00000489678 EIF4G3O43432 1585 aaKnown RBP16.21■□□□□ 0.19
ABCD4-214ENST00000489678 PELP1Q8IZL8 1130 aaKnown RBP16.19■□□□□ 0.18
ABCD4-214ENST00000489678 CEP162Q5TB80 1403 aa16.19■□□□□ 0.18
ABCD4-214ENST00000489678 TRIM26Q12899 539 aaPredicted RBP16.18■□□□□ 0.18
ABCD4-214ENST00000489678 GOLGA3Q08378 1498 aa16.18■□□□□ 0.18
ABCD4-214ENST00000489678 GRIN2BQ13224 1484 aa16.14■□□□□ 0.17
ABCD4-214ENST00000489678 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.14■□□□□ 0.17
ABCD4-214ENST00000489678 HNRNPUL2Q1KMD3 747 aaKnown RBP16.14■□□□□ 0.17
ABCD4-214ENST00000489678 PRXQ9BXM0 1461 aa16.14■□□□□ 0.17
ABCD4-214ENST00000489678 CLIP1P30622 1438 aa16.11■□□□□ 0.17
ABCD4-214ENST00000489678 EEA1Q15075 1411 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms