RNA–Protein interactions for RNA: ENST00000488683.1

CLIC4-202, Transcript of chloride intracellular channel 4, humanhuman

TSL 2

Gene CLIC4, Length 2,723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-202ENST00000488683 NISCHQ9Y2I1 1504 aa26.5■■□□□ 1.83
CLIC4-202ENST00000488683 SHROOM4Q9ULL8 1493 aa22.86■■□□□ 1.25
CLIC4-202ENST00000488683 CCDC180Q9P1Z9 1646 aa22.55■■□□□ 1.2
CLIC4-202ENST00000488683 ZCCHC6Q5VYS8 1495 aaKnown RBP22.42■■□□□ 1.18
CLIC4-202ENST00000488683 SUPT5HO00267 1087 aaKnown RBP22.36■■□□□ 1.17
CLIC4-202ENST00000488683 DCAF8L2P0C7V8 631 aa22.28■■□□□ 1.16
CLIC4-202ENST00000488683 DCAF1Q9Y4B6 1507 aa21.71■■□□□ 1.07
CLIC4-202ENST00000488683 MYO15BQ96JP2 1530 aa21.54■■□□□ 1.04
CLIC4-202ENST00000488683 CHIC1Q5VXU3 224 aa21.5■■□□□ 1.03
CLIC4-202ENST00000488683 SCRIBQ14160 1630 aa21.18■□□□□ 0.98
CLIC4-202ENST00000488683 ABCC9O60706 1549 aa21.16■□□□□ 0.98
CLIC4-202ENST00000488683 LOC105371045A0A1W2PR82 267 aa21.13■□□□□ 0.97
CLIC4-202ENST00000488683 PCGF6Q9BYE7 350 aa21.03■□□□□ 0.96
CLIC4-202ENST00000488683 RSF1Q96T23 1441 aaPredicted RBP20.96■□□□□ 0.95
CLIC4-202ENST00000488683 EHMT2Q96KQ7 1210 aa20.86■□□□□ 0.93
CLIC4-202ENST00000488683 NACADO15069 1562 aa20.84■□□□□ 0.93
CLIC4-202ENST00000488683 RB1CC1Q8TDY2 1594 aa20.79■□□□□ 0.92
CLIC4-202ENST00000488683 HRCP23327 699 aa20.78■□□□□ 0.92
CLIC4-202ENST00000488683 FAM9AQ8IZU1 332 aaPredicted RBP20.77■□□□□ 0.92
CLIC4-202ENST00000488683 PPARGC1BQ86YN6 1023 aaKnown RBP20.77■□□□□ 0.91
CLIC4-202ENST00000488683 CECR2Q9BXF3 1484 aa20.72■□□□□ 0.91
CLIC4-202ENST00000488683 MROH2BQ7Z745 1585 aa20.64■□□□□ 0.89
CLIC4-202ENST00000488683 TRIM41Q8WV44 630 aa20.61■□□□□ 0.89
CLIC4-202ENST00000488683 WIZO95785 1651 aa20.55■□□□□ 0.88
CLIC4-202ENST00000488683 BAZ1AQ9NRL2 1556 aaPredicted RBP20.37■□□□□ 0.85
CLIC4-202ENST00000488683 UNC13AQ9UPW8 1703 aa20.33■□□□□ 0.85
CLIC4-202ENST00000488683 TRIM26Q12899 539 aaPredicted RBP20.33■□□□□ 0.85
CLIC4-202ENST00000488683 EIF4G1Q04637 1599 aaKnown RBP20.25■□□□□ 0.83
CLIC4-202ENST00000488683 SMARCA4P51532 1647 aa20.22■□□□□ 0.83
CLIC4-202ENST00000488683 TOP2AP11388 1531 aaKnown RBP20.16■□□□□ 0.82
CLIC4-202ENST00000488683 PABPN1Q86U42 306 aaKnown RBP eCLIP20.15■□□□□ 0.82
CLIC4-202ENST00000488683 TTBK1Q5TCY1 1321 aaPredicted RBP20.12■□□□□ 0.81
CLIC4-202ENST00000488683 CCDC88BA6NC98 1476 aa20.1■□□□□ 0.81
CLIC4-202ENST00000488683 SMARCA2P51531 1590 aa20.09■□□□□ 0.81
CLIC4-202ENST00000488683 ABCC8Q09428 1581 aa20.07■□□□□ 0.8
CLIC4-202ENST00000488683 BICRAQ9NZM4 1560 aa20.04■□□□□ 0.8
CLIC4-202ENST00000488683 SOGA1O94964 1423 aa19.85■□□□□ 0.77
CLIC4-202ENST00000488683 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.84■□□□□ 0.77
CLIC4-202ENST00000488683 PEG3Q9GZU2 1588 aa19.81■□□□□ 0.76
CLIC4-202ENST00000488683 RUSC2Q8N2Y8 1516 aa19.8■□□□□ 0.76
CLIC4-202ENST00000488683 ZEB1P37275 1124 aaPredicted RBP19.75■□□□□ 0.75
CLIC4-202ENST00000488683 UBTFP17480 764 aaKnown RBP19.71■□□□□ 0.75
CLIC4-202ENST00000488683 CEP162Q5TB80 1403 aa19.7■□□□□ 0.74
CLIC4-202ENST00000488683 ATAD2BQ9ULI0 1458 aa19.69■□□□□ 0.74
CLIC4-202ENST00000488683 RANGAP1P46060 587 aaPredicted RBP19.68■□□□□ 0.74
CLIC4-202ENST00000488683 WRNQ14191 1432 aaPredicted RBP eCLIP19.67■□□□□ 0.74
CLIC4-202ENST00000488683 CSRNP3Q8WYN3 585 aa19.66■□□□□ 0.74
CLIC4-202ENST00000488683 CCER1Q8TC90 406 aaPredicted RBP19.65■□□□□ 0.74
CLIC4-202ENST00000488683 SYNJ1O43426 1573 aa19.64■□□□□ 0.73
CLIC4-202ENST00000488683 TNIKQ9UKE5 1360 aa19.64■□□□□ 0.73
CLIC4-202ENST00000488683 EEA1Q15075 1411 aa19.63■□□□□ 0.73
CLIC4-202ENST00000488683 BAZ1BQ9UIG0 1483 aaKnown RBP19.62■□□□□ 0.73
CLIC4-202ENST00000488683 GOLGA3Q08378 1498 aa19.54■□□□□ 0.72
CLIC4-202ENST00000488683 KIF21BO75037 1637 aa19.44■□□□□ 0.7
CLIC4-202ENST00000488683 CEP164Q9UPV0 1460 aa19.43■□□□□ 0.7
CLIC4-202ENST00000488683 HNRNPUL2Q1KMD3 747 aaKnown RBP19.38■□□□□ 0.69
CLIC4-202ENST00000488683 TOP2BQ02880 1626 aa19.36■□□□□ 0.69
CLIC4-202ENST00000488683 RAPGEF2Q9Y4G8 1499 aa19.36■□□□□ 0.69
CLIC4-202ENST00000488683 CLIP1P30622 1438 aa19.32■□□□□ 0.68
CLIC4-202ENST00000488683 SCAF1Q9H7N4 1312 aaKnown RBP19.32■□□□□ 0.68
CLIC4-202ENST00000488683 BIVM-ERCC5R4GMW8 1640 aa19.3■□□□□ 0.68
CLIC4-202ENST00000488683 HMGXB3Q12766 1538 aa19.29■□□□□ 0.68
CLIC4-202ENST00000488683 NCAPD3P42695 1498 aa19.29■□□□□ 0.68
CLIC4-202ENST00000488683 VPS8Q8N3P4 1428 aa19.24■□□□□ 0.67
CLIC4-202ENST00000488683 CUX1P39880 1505 aa19.21■□□□□ 0.67
CLIC4-202ENST00000488683 DIEXFQ68CQ4 756 aaKnown RBP19.2■□□□□ 0.66
CLIC4-202ENST00000488683 PRXQ9BXM0 1461 aa19.15■□□□□ 0.66
CLIC4-202ENST00000488683 CFTRP13569 1480 aa19.14■□□□□ 0.65
CLIC4-202ENST00000488683 NEUROD1Q13562 356 aa19.13■□□□□ 0.65
CLIC4-202ENST00000488683 ERICH3Q5RHP9 1530 aa19.12■□□□□ 0.65
CLIC4-202ENST00000488683 APLP2Q06481 763 aa19.11■□□□□ 0.65
CLIC4-202ENST00000488683 ARAP1Q96P48 1450 aa19.07■□□□□ 0.64
CLIC4-202ENST00000488683 KANK4Q5T7N3 995 aaPredicted RBP19.05■□□□□ 0.64
CLIC4-202ENST00000488683 YTHDC1Q96MU7 727 aaKnown RBP19.05■□□□□ 0.64
CLIC4-202ENST00000488683 KIF27Q86VH2 1401 aa19.04■□□□□ 0.64
CLIC4-202ENST00000488683 PRDM2Q13029 1718 aa19.02■□□□□ 0.64
CLIC4-202ENST00000488683 ACIN1Q9UKV3 1341 aaKnown RBP18.98■□□□□ 0.63
CLIC4-202ENST00000488683 ZNF316A6NFI3 1004 aaPredicted RBP18.98■□□□□ 0.63
CLIC4-202ENST00000488683 ITGAEP38570 1179 aa18.97■□□□□ 0.63
CLIC4-202ENST00000488683 CADPSQ9ULU8 1353 aa18.92■□□□□ 0.62
CLIC4-202ENST00000488683 GTF3C3Q9Y5Q9 886 aa18.91■□□□□ 0.62
CLIC4-202ENST00000488683 CUX2O14529 1486 aa18.91■□□□□ 0.62
CLIC4-202ENST00000488683 ARHGAP35Q9NRY4 1499 aa18.91■□□□□ 0.62
CLIC4-202ENST00000488683 MIER1Q8N108 512 aa18.89■□□□□ 0.61
CLIC4-202ENST00000488683 CC2D2AQ9P2K1 1620 aa18.89■□□□□ 0.61
CLIC4-202ENST00000488683 IGF1RP08069 1367 aa18.87■□□□□ 0.61
CLIC4-202ENST00000488683 FGD5Q6ZNL6 1462 aa18.86■□□□□ 0.61
CLIC4-202ENST00000488683 P3H3Q8IVL6 736 aa18.86■□□□□ 0.61
CLIC4-202ENST00000488683 ATP1B4Q9UN42 357 aaPredicted RBP18.8■□□□□ 0.6
CLIC4-202ENST00000488683 RRBP1Q9P2E9 1410 aaKnown RBP18.78■□□□□ 0.6
CLIC4-202ENST00000488683 CARMIL1Q5VZK9 1371 aa18.77■□□□□ 0.6
CLIC4-202ENST00000488683 DHX57Q6P158 1386 aaKnown RBP18.77■□□□□ 0.6
CLIC4-202ENST00000488683 FANCD2Q9BXW9 1451 aa18.76■□□□□ 0.59
CLIC4-202ENST00000488683 CENPBP07199 599 aaPredicted RBP18.75■□□□□ 0.59
CLIC4-202ENST00000488683 NESP48681 1621 aa18.71■□□□□ 0.59
CLIC4-202ENST00000488683 RAD54L2Q9Y4B4 1467 aa18.7■□□□□ 0.58
CLIC4-202ENST00000488683 CCNB3Q8WWL7 1395 aa18.7■□□□□ 0.58
CLIC4-202ENST00000488683 TIAM1Q13009 1591 aa18.68■□□□□ 0.58
CLIC4-202ENST00000488683 DNMBPQ6XZF7 1577 aa18.66■□□□□ 0.58
CLIC4-202ENST00000488683 TOPBP1Q92547 1522 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms