RNA–Protein interactions for RNA: ENST00000487540.6

CSF3R-212, Transcript of colony stimulating factor 3 receptor, humanhuman

TSL 5

Gene CSF3R, Length 1,931 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSF3R-212ENST00000487540 NISCHQ9Y2I1 1504 aa32.82■■■□□ 2.84
CSF3R-212ENST00000487540 CCDC180Q9P1Z9 1646 aa28.1■■■□□ 2.09
CSF3R-212ENST00000487540 ZCCHC6Q5VYS8 1495 aaKnown RBP27.8■■■□□ 2.04
CSF3R-212ENST00000487540 SHROOM4Q9ULL8 1493 aa27.62■■■□□ 2.01
CSF3R-212ENST00000487540 SUPT5HO00267 1087 aaKnown RBP27.14■■□□□ 1.94
CSF3R-212ENST00000487540 DCAF1Q9Y4B6 1507 aa27.11■■□□□ 1.93
CSF3R-212ENST00000487540 DCAF8L2P0C7V8 631 aa26.78■■□□□ 1.88
CSF3R-212ENST00000487540 CHIC1Q5VXU3 224 aa26.67■■□□□ 1.86
CSF3R-212ENST00000487540 MYO15BQ96JP2 1530 aa26.55■■□□□ 1.84
CSF3R-212ENST00000487540 ABCC9O60706 1549 aa26.36■■□□□ 1.81
CSF3R-212ENST00000487540 NACADO15069 1562 aa26.14■■□□□ 1.78
CSF3R-212ENST00000487540 HRCP23327 699 aa25.97■■□□□ 1.75
CSF3R-212ENST00000487540 SCRIBQ14160 1630 aa25.97■■□□□ 1.75
CSF3R-212ENST00000487540 RSF1Q96T23 1441 aaPredicted RBP25.94■■□□□ 1.74
CSF3R-212ENST00000487540 RB1CC1Q8TDY2 1594 aa25.84■■□□□ 1.73
CSF3R-212ENST00000487540 LOC105371045A0A1W2PR82 267 aa25.72■■□□□ 1.71
CSF3R-212ENST00000487540 PCGF6Q9BYE7 350 aa25.72■■□□□ 1.71
CSF3R-212ENST00000487540 CECR2Q9BXF3 1484 aa25.48■■□□□ 1.67
CSF3R-212ENST00000487540 MROH2BQ7Z745 1585 aa25.45■■□□□ 1.66
CSF3R-212ENST00000487540 TRIM26Q12899 539 aaPredicted RBP25.4■■□□□ 1.66
CSF3R-212ENST00000487540 TRIM41Q8WV44 630 aa25.39■■□□□ 1.66
CSF3R-212ENST00000487540 WIZO95785 1651 aa25.3■■□□□ 1.64
CSF3R-212ENST00000487540 BAZ1AQ9NRL2 1556 aaPredicted RBP25.25■■□□□ 1.63
CSF3R-212ENST00000487540 UNC13AQ9UPW8 1703 aa25.25■■□□□ 1.63
CSF3R-212ENST00000487540 PPARGC1BQ86YN6 1023 aaKnown RBP25.2■■□□□ 1.62
CSF3R-212ENST00000487540 EIF4G1Q04637 1599 aaKnown RBP25.17■■□□□ 1.62
CSF3R-212ENST00000487540 BICRAQ9NZM4 1560 aa25.03■■□□□ 1.6
CSF3R-212ENST00000487540 FAM9AQ8IZU1 332 aaPredicted RBP25.02■■□□□ 1.6
CSF3R-212ENST00000487540 TOP2AP11388 1531 aaKnown RBP25■■□□□ 1.59
CSF3R-212ENST00000487540 SMARCA4P51532 1647 aa24.98■■□□□ 1.59
CSF3R-212ENST00000487540 PABPN1Q86U42 306 aaKnown RBP eCLIP24.96■■□□□ 1.59
CSF3R-212ENST00000487540 ZEB1P37275 1124 aaPredicted RBP24.95■■□□□ 1.58
CSF3R-212ENST00000487540 SMARCA2P51531 1590 aa24.85■■□□□ 1.57
CSF3R-212ENST00000487540 CCDC88BA6NC98 1476 aa24.82■■□□□ 1.56
CSF3R-212ENST00000487540 ABCC8Q09428 1581 aa24.68■■□□□ 1.54
CSF3R-212ENST00000487540 PEG3Q9GZU2 1588 aa24.62■■□□□ 1.53
CSF3R-212ENST00000487540 EHMT2Q96KQ7 1210 aa24.62■■□□□ 1.53
CSF3R-212ENST00000487540 WRNQ14191 1432 aaPredicted RBP eCLIP24.59■■□□□ 1.53
CSF3R-212ENST00000487540 EEA1Q15075 1411 aa24.56■■□□□ 1.52
CSF3R-212ENST00000487540 TNIKQ9UKE5 1360 aa24.49■■□□□ 1.51
CSF3R-212ENST00000487540 SOGA1O94964 1423 aa24.48■■□□□ 1.51
CSF3R-212ENST00000487540 CEP162Q5TB80 1403 aa24.43■■□□□ 1.5
CSF3R-212ENST00000487540 ATAD2BQ9ULI0 1458 aa24.41■■□□□ 1.5
CSF3R-212ENST00000487540 CSRNP3Q8WYN3 585 aa24.38■■□□□ 1.49
CSF3R-212ENST00000487540 RUSC2Q8N2Y8 1516 aa24.36■■□□□ 1.49
CSF3R-212ENST00000487540 GOLGA3Q08378 1498 aa24.29■■□□□ 1.48
CSF3R-212ENST00000487540 BAZ1BQ9UIG0 1483 aaKnown RBP24.29■■□□□ 1.48
CSF3R-212ENST00000487540 SYNJ1O43426 1573 aa24.24■■□□□ 1.47
CSF3R-212ENST00000487540 KIF21BO75037 1637 aa24.23■■□□□ 1.47
CSF3R-212ENST00000487540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.2■■□□□ 1.46
CSF3R-212ENST00000487540 CCER1Q8TC90 406 aaPredicted RBP24.16■■□□□ 1.46
CSF3R-212ENST00000487540 CEP164Q9UPV0 1460 aa24.16■■□□□ 1.46
CSF3R-212ENST00000487540 NCAPD3P42695 1498 aa24.15■■□□□ 1.46
CSF3R-212ENST00000487540 UBTFP17480 764 aaKnown RBP24.12■■□□□ 1.45
CSF3R-212ENST00000487540 HMGXB3Q12766 1538 aa24.12■■□□□ 1.45
CSF3R-212ENST00000487540 TOP2BQ02880 1626 aa24.01■■□□□ 1.43
CSF3R-212ENST00000487540 BIVM-ERCC5R4GMW8 1640 aa23.97■■□□□ 1.43
CSF3R-212ENST00000487540 CLIP1P30622 1438 aa23.96■■□□□ 1.43
CSF3R-212ENST00000487540 VPS8Q8N3P4 1428 aa23.92■■□□□ 1.42
CSF3R-212ENST00000487540 RAPGEF2Q9Y4G8 1499 aa23.9■■□□□ 1.42
CSF3R-212ENST00000487540 TTBK1Q5TCY1 1321 aaPredicted RBP23.87■■□□□ 1.41
CSF3R-212ENST00000487540 SCAF1Q9H7N4 1312 aaKnown RBP23.87■■□□□ 1.41
CSF3R-212ENST00000487540 ERICH3Q5RHP9 1530 aa23.83■■□□□ 1.41
CSF3R-212ENST00000487540 CC2D2AQ9P2K1 1620 aa23.83■■□□□ 1.4
CSF3R-212ENST00000487540 DIEXFQ68CQ4 756 aaKnown RBP23.78■■□□□ 1.4
CSF3R-212ENST00000487540 PRXQ9BXM0 1461 aa23.78■■□□□ 1.4
CSF3R-212ENST00000487540 CFTRP13569 1480 aa23.7■■□□□ 1.38
CSF3R-212ENST00000487540 ACIN1Q9UKV3 1341 aaKnown RBP23.7■■□□□ 1.38
CSF3R-212ENST00000487540 CUX1P39880 1505 aa23.7■■□□□ 1.38
CSF3R-212ENST00000487540 ZNF316A6NFI3 1004 aaPredicted RBP23.67■■□□□ 1.38
CSF3R-212ENST00000487540 ARAP1Q96P48 1450 aa23.63■■□□□ 1.37
CSF3R-212ENST00000487540 APLP2Q06481 763 aa23.62■■□□□ 1.37
CSF3R-212ENST00000487540 PELP1Q8IZL8 1130 aaKnown RBP23.61■■□□□ 1.37
CSF3R-212ENST00000487540 PRDM2Q13029 1718 aa23.6■■□□□ 1.37
CSF3R-212ENST00000487540 NEUROD1Q13562 356 aa23.59■■□□□ 1.37
CSF3R-212ENST00000487540 HNRNPUL2Q1KMD3 747 aaKnown RBP23.59■■□□□ 1.37
CSF3R-212ENST00000487540 KIF27Q86VH2 1401 aa23.58■■□□□ 1.37
CSF3R-212ENST00000487540 CADPSQ9ULU8 1353 aa23.57■■□□□ 1.36
CSF3R-212ENST00000487540 CENPBP07199 599 aaPredicted RBP23.51■■□□□ 1.35
CSF3R-212ENST00000487540 CLSPNQ9HAW4 1339 aa23.49■■□□□ 1.35
CSF3R-212ENST00000487540 RRBP1Q9P2E9 1410 aaKnown RBP23.44■■□□□ 1.34
CSF3R-212ENST00000487540 ARHGAP35Q9NRY4 1499 aa23.41■■□□□ 1.34
CSF3R-212ENST00000487540 RANGAP1P46060 587 aaPredicted RBP23.39■■□□□ 1.34
CSF3R-212ENST00000487540 KANK4Q5T7N3 995 aaPredicted RBP23.39■■□□□ 1.33
CSF3R-212ENST00000487540 CUX2O14529 1486 aa23.38■■□□□ 1.33
CSF3R-212ENST00000487540 DHX57Q6P158 1386 aaKnown RBP23.38■■□□□ 1.33
CSF3R-212ENST00000487540 IGF1RP08069 1367 aa23.34■■□□□ 1.33
CSF3R-212ENST00000487540 GTF3C3Q9Y5Q9 886 aa23.32■■□□□ 1.32
CSF3R-212ENST00000487540 MAP3K1Q13233 1512 aa23.32■■□□□ 1.32
CSF3R-212ENST00000487540 FANCD2Q9BXW9 1451 aa23.3■■□□□ 1.32
CSF3R-212ENST00000487540 MIER1Q8N108 512 aa23.27■■□□□ 1.32
CSF3R-212ENST00000487540 LAMC3Q9Y6N6 1575 aa23.25■■□□□ 1.31
CSF3R-212ENST00000487540 CCNB3Q8WWL7 1395 aa23.23■■□□□ 1.31
CSF3R-212ENST00000487540 NESP48681 1621 aa23.22■■□□□ 1.31
CSF3R-212ENST00000487540 FGD5Q6ZNL6 1462 aa23.22■■□□□ 1.31
CSF3R-212ENST00000487540 TIAM1Q13009 1591 aa23.2■■□□□ 1.3
CSF3R-212ENST00000487540 CARMIL1Q5VZK9 1371 aa23.2■■□□□ 1.3
CSF3R-212ENST00000487540 DNAJC5BQ9UF47 199 aa23.17■■□□□ 1.3
CSF3R-212ENST00000487540 DNMBPQ6XZF7 1577 aa23.13■■□□□ 1.29
CSF3R-212ENST00000487540 PDS5BQ9NTI5 1447 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms