RNA–Protein interactions for RNA: ENST00000486211.1

XRN1-212, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 2

Gene XRN1, Length 1,180 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-212ENST00000486211 AEBP2Q6ZN18 517 aaPredicted RBP25.81■■□□□ 1.72
XRN1-212ENST00000486211 CHIC1Q5VXU3 224 aa24.47■■□□□ 1.51
XRN1-212ENST00000486211 SENP3Q9H4L4 574 aaPredicted RBP22.07■■□□□ 1.12
XRN1-212ENST00000486211 PHF23Q9BUL5 403 aaPredicted RBP21.78■■□□□ 1.08
XRN1-212ENST00000486211 NISCHQ9Y2I1 1504 aa21.76■■□□□ 1.07
XRN1-212ENST00000486211 FOXD1Q16676 465 aa20.56■□□□□ 0.88
XRN1-212ENST00000486211 ABCC9O60706 1549 aa20.46■□□□□ 0.87
XRN1-212ENST00000486211 DNAJC5BQ9UF47 199 aa19.84■□□□□ 0.77
XRN1-212ENST00000486211 CCDC180Q9P1Z9 1646 aa19.81■□□□□ 0.76
XRN1-212ENST00000486211 PLPPR3Q6T4P5 718 aa19.55■□□□□ 0.72
XRN1-212ENST00000486211 MSH5O43196 834 aa19.3■□□□□ 0.68
XRN1-212ENST00000486211 PIAS4Q8N2W9 510 aaPredicted RBP19.21■□□□□ 0.67
XRN1-212ENST00000486211 PPP6R1Q9UPN7 881 aa19.17■□□□□ 0.66
XRN1-212ENST00000486211 RB1CC1Q8TDY2 1594 aa19.16■□□□□ 0.66
XRN1-212ENST00000486211 ADRA2BP18089 450 aa19.12■□□□□ 0.65
XRN1-212ENST00000486211 PABPN1Q86U42 306 aaKnown RBP eCLIP18.92■□□□□ 0.62
XRN1-212ENST00000486211 POTEDQ86YR6 584 aa18.92■□□□□ 0.62
XRN1-212ENST00000486211 NACADO15069 1562 aa18.89■□□□□ 0.61
XRN1-212ENST00000486211 UNC13AQ9UPW8 1703 aa18.76■□□□□ 0.59
XRN1-212ENST00000486211 BICRAQ9NZM4 1560 aa18.71■□□□□ 0.59
XRN1-212ENST00000486211 DNAJC5Q9H3Z4 198 aa18.68■□□□□ 0.58
XRN1-212ENST00000486211 DCAF8L2P0C7V8 631 aa18.53■□□□□ 0.56
XRN1-212ENST00000486211 CECR2Q9BXF3 1484 aa18.5■□□□□ 0.55
XRN1-212ENST00000486211 CC2D2AQ9P2K1 1620 aa18.46■□□□□ 0.55
XRN1-212ENST00000486211 MYO15BQ96JP2 1530 aa18.44■□□□□ 0.54
XRN1-212ENST00000486211 SHROOM4Q9ULL8 1493 aa18.34■□□□□ 0.53
XRN1-212ENST00000486211 EIF4G1Q04637 1599 aaKnown RBP18.26■□□□□ 0.51
XRN1-212ENST00000486211 SCRIBQ14160 1630 aa17.99■□□□□ 0.47
XRN1-212ENST00000486211 DCAF1Q9Y4B6 1507 aa17.95■□□□□ 0.46
XRN1-212ENST00000486211 CUX2O14529 1486 aa17.92■□□□□ 0.46
XRN1-212ENST00000486211 ZCCHC6Q5VYS8 1495 aaKnown RBP17.91■□□□□ 0.46
XRN1-212ENST00000486211 ERCC6Q03468 1493 aa17.67■□□□□ 0.42
XRN1-212ENST00000486211 MAPK8IP2Q13387 824 aaPredicted RBP17.59■□□□□ 0.41
XRN1-212ENST00000486211 SCAF1Q9H7N4 1312 aaKnown RBP17.56■□□□□ 0.4
XRN1-212ENST00000486211 TRIM41Q8WV44 630 aa17.51■□□□□ 0.39
XRN1-212ENST00000486211 DMRT2Q9Y5R5 561 aa17.48■□□□□ 0.39
XRN1-212ENST00000486211 NCAPD3P42695 1498 aa17.47■□□□□ 0.39
XRN1-212ENST00000486211 NESP48681 1621 aa17.4■□□□□ 0.38
XRN1-212ENST00000486211 THOC2Q8NI27 1593 aaKnown RBP17.38■□□□□ 0.37
XRN1-212ENST00000486211 ATAD2BQ9ULI0 1458 aa17.31■□□□□ 0.36
XRN1-212ENST00000486211 HMGXB3Q12766 1538 aa17.27■□□□□ 0.36
XRN1-212ENST00000486211 SMARCA2P51531 1590 aa17.2■□□□□ 0.34
XRN1-212ENST00000486211 LAMC3Q9Y6N6 1575 aa17.15■□□□□ 0.34
XRN1-212ENST00000486211 KIF21AQ7Z4S6 1674 aa17.14■□□□□ 0.33
XRN1-212ENST00000486211 SMARCA4P51532 1647 aa17.12■□□□□ 0.33
XRN1-212ENST00000486211 PPP4R3CPQ6ZMV5 832 aa17.12■□□□□ 0.33
XRN1-212ENST00000486211 BAZ1BQ9UIG0 1483 aaKnown RBP17.07■□□□□ 0.32
XRN1-212ENST00000486211 PDS5BQ9NTI5 1447 aa17.05■□□□□ 0.32
XRN1-212ENST00000486211 BAZ1AQ9NRL2 1556 aaPredicted RBP17.02■□□□□ 0.32
XRN1-212ENST00000486211 PEG3Q9GZU2 1588 aa16.98■□□□□ 0.31
XRN1-212ENST00000486211 WDR62O43379 1518 aa16.98■□□□□ 0.31
XRN1-212ENST00000486211 MRC2Q9UBG0 1479 aa16.98■□□□□ 0.31
XRN1-212ENST00000486211 OSCARQ8IYS5 282 aa16.94■□□□□ 0.3
XRN1-212ENST00000486211 CADPSQ9ULU8 1353 aa16.88■□□□□ 0.29
XRN1-212ENST00000486211 RIMBP3CA6NJZ7 1639 aa16.85■□□□□ 0.29
XRN1-212ENST00000486211 RIMBP3BA6NNM3 1639 aa16.85■□□□□ 0.29
XRN1-212ENST00000486211 RIMBP3Q9UFD9 1639 aa16.85■□□□□ 0.29
XRN1-212ENST00000486211 CNKSR2Q8WXI2 1034 aa16.83■□□□□ 0.28
XRN1-212ENST00000486211 DCAF8L1A6NGE4 600 aa16.82■□□□□ 0.28
XRN1-212ENST00000486211 HOXD11P31277 338 aaPredicted RBP16.8■□□□□ 0.28
XRN1-212ENST00000486211 MROH2BQ7Z745 1585 aa16.77■□□□□ 0.28
XRN1-212ENST00000486211 CEP164Q9UPV0 1460 aa16.76■□□□□ 0.27
XRN1-212ENST00000486211 ARHGEF11O15085 1522 aa16.73■□□□□ 0.27
XRN1-212ENST00000486211 FANCD2Q9BXW9 1451 aa16.69■□□□□ 0.26
XRN1-212ENST00000486211 RNF216Q9NWF9 866 aaPredicted RBP16.68■□□□□ 0.26
XRN1-212ENST00000486211 URB2Q14146 1524 aaKnown RBP16.63■□□□□ 0.25
XRN1-212ENST00000486211 CACNB1Q02641 598 aaPredicted RBP16.62■□□□□ 0.25
XRN1-212ENST00000486211 CYB5RLQ6IPT4 315 aa16.59■□□□□ 0.25
XRN1-212ENST00000486211 TRHP20396 242 aaPredicted RBP16.58■□□□□ 0.24
XRN1-212ENST00000486211 CFTRP13569 1480 aa16.57■□□□□ 0.24
XRN1-212ENST00000486211 ARAP1Q96P48 1450 aa16.54■□□□□ 0.24
XRN1-212ENST00000486211 ZNF608Q9ULD9 1512 aaPredicted RBP16.53■□□□□ 0.24
XRN1-212ENST00000486211 WIZO95785 1651 aa16.51■□□□□ 0.23
XRN1-212ENST00000486211 NCBP3Q53F19 620 aaKnown RBP16.49■□□□□ 0.23
XRN1-212ENST00000486211 IFT140Q96RY7 1462 aa16.45■□□□□ 0.22
XRN1-212ENST00000486211 RNF39Q9H2S5 420 aa16.43■□□□□ 0.22
XRN1-212ENST00000486211 RSF1Q96T23 1441 aaPredicted RBP16.39■□□□□ 0.21
XRN1-212ENST00000486211 EIF4G3O43432 1585 aaKnown RBP16.38■□□□□ 0.21
XRN1-212ENST00000486211 CHD1O14646 1710 aa16.38■□□□□ 0.21
XRN1-212ENST00000486211 TOPBP1Q92547 1522 aa16.31■□□□□ 0.2
XRN1-212ENST00000486211 PRDM2Q13029 1718 aa16.31■□□□□ 0.2
XRN1-212ENST00000486211 TOP2AP11388 1531 aaKnown RBP16.26■□□□□ 0.19
XRN1-212ENST00000486211 AQRO60306 1485 aaKnown RBP eCLIP16.26■□□□□ 0.191e-6■■■□□ 16.6
XRN1-212ENST00000486211 TARBP1Q13395 1621 aaKnown RBP16.23■□□□□ 0.19
XRN1-212ENST00000486211 C1QBPQ07021 282 aaKnown RBP16.22■□□□□ 0.19
XRN1-212ENST00000486211 CLASP1Q7Z460 1538 aa16.21■□□□□ 0.19
XRN1-212ENST00000486211 FBLN2P98095 1184 aa16.21■□□□□ 0.19
XRN1-212ENST00000486211 NPM3O75607 178 aaKnown RBP16.19■□□□□ 0.18
XRN1-212ENST00000486211 ABCC8Q09428 1581 aa16.18■□□□□ 0.18
XRN1-212ENST00000486211 DNMBPQ6XZF7 1577 aa16.18■□□□□ 0.18
XRN1-212ENST00000486211 POLA1P09884 1462 aaPredicted RBP16.1■□□□□ 0.17
XRN1-212ENST00000486211 CCDC88BA6NC98 1476 aa16.09■□□□□ 0.17
XRN1-212ENST00000486211 SYNJ1O43426 1573 aa16.09■□□□□ 0.17
XRN1-212ENST00000486211 SNAPC4Q5SXM2 1469 aa16.08■□□□□ 0.16
XRN1-212ENST00000486211 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.07■□□□□ 0.16
XRN1-212ENST00000486211 GAPVD1Q14C86 1478 aa16.05■□□□□ 0.16
XRN1-212ENST00000486211 RAD54L2Q9Y4B4 1467 aa16.05■□□□□ 0.16
XRN1-212ENST00000486211 TDRD9Q8NDG6 1382 aaKnown RBP16.05■□□□□ 0.16
XRN1-212ENST00000486211 ILDR1Q86SU0 546 aaPredicted RBP16.04■□□□□ 0.16
XRN1-212ENST00000486211 MAGI1Q96QZ7 1491 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms