RNA–Protein interactions for RNA: ENST00000484236.1

SHROOM3-206, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 475 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-206ENST00000484236 AEBP2Q6ZN18 517 aaPredicted RBP18.48■□□□□ 0.55
SHROOM3-206ENST00000484236 CHIC1Q5VXU3 224 aa17.22■□□□□ 0.35
SHROOM3-206ENST00000484236 NISCHQ9Y2I1 1504 aa15.98■□□□□ 0.15
SHROOM3-206ENST00000484236 SENP3Q9H4L4 574 aaPredicted RBP15.83■□□□□ 0.12
SHROOM3-206ENST00000484236 PHF23Q9BUL5 403 aaPredicted RBP15.57■□□□□ 0.08
SHROOM3-206ENST00000484236 POTEDQ86YR6 584 aa15.06■□□□□ 0
SHROOM3-206ENST00000484236 FOXD1Q16676 465 aa14.88□□□□□ -0.03
SHROOM3-206ENST00000484236 MSH5O43196 834 aa14.15□□□□□ -0.14
SHROOM3-206ENST00000484236 CCDC180Q9P1Z9 1646 aa13.85□□□□□ -0.19
SHROOM3-206ENST00000484236 PIAS4Q8N2W9 510 aaPredicted RBP13.74□□□□□ -0.21
SHROOM3-206ENST00000484236 ZCCHC6Q5VYS8 1495 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-206ENST00000484236 PPP6R1Q9UPN7 881 aa13.41□□□□□ -0.26
SHROOM3-206ENST00000484236 ADRA2BP18089 450 aa13.33□□□□□ -0.28
SHROOM3-206ENST00000484236 DCAF1Q9Y4B6 1507 aa13.28□□□□□ -0.28
SHROOM3-206ENST00000484236 SHROOM4Q9ULL8 1493 aa13.13□□□□□ -0.31
SHROOM3-206ENST00000484236 PLPPR3Q6T4P5 718 aa13.12□□□□□ -0.31
SHROOM3-206ENST00000484236 MYO15BQ96JP2 1530 aa13.01□□□□□ -0.33
SHROOM3-206ENST00000484236 DCAF8L2P0C7V8 631 aa12.98□□□□□ -0.33
SHROOM3-206ENST00000484236 SUPT5HO00267 1087 aaKnown RBP12.81□□□□□ -0.36
SHROOM3-206ENST00000484236 NACADO15069 1562 aa12.81□□□□□ -0.36
SHROOM3-206ENST00000484236 ABCC9O60706 1549 aa12.69□□□□□ -0.38
SHROOM3-206ENST00000484236 SCRIBQ14160 1630 aa12.67□□□□□ -0.38
SHROOM3-206ENST00000484236 CACNB1Q02641 598 aaPredicted RBP12.64□□□□□ -0.39
SHROOM3-206ENST00000484236 RB1CC1Q8TDY2 1594 aa12.6□□□□□ -0.39
SHROOM3-206ENST00000484236 RSF1Q96T23 1441 aaPredicted RBP12.49□□□□□ -0.41
SHROOM3-206ENST00000484236 MAPK8IP2Q13387 824 aaPredicted RBP12.48□□□□□ -0.41
SHROOM3-206ENST00000484236 DMRT2Q9Y5R5 561 aa12.44□□□□□ -0.42
SHROOM3-206ENST00000484236 UNC13AQ9UPW8 1703 aa12.35□□□□□ -0.43
SHROOM3-206ENST00000484236 BAZ1AQ9NRL2 1556 aaPredicted RBP12.33□□□□□ -0.44
SHROOM3-206ENST00000484236 CECR2Q9BXF3 1484 aa12.33□□□□□ -0.44
SHROOM3-206ENST00000484236 MROH2BQ7Z745 1585 aa12.31□□□□□ -0.44
SHROOM3-206ENST00000484236 WIZO95785 1651 aa12.25□□□□□ -0.45
SHROOM3-206ENST00000484236 SMARCA4P51532 1647 aa12.22□□□□□ -0.45
SHROOM3-206ENST00000484236 BICRAQ9NZM4 1560 aa12.18□□□□□ -0.46
SHROOM3-206ENST00000484236 TOP2AP11388 1531 aaKnown RBP12.16□□□□□ -0.46
SHROOM3-206ENST00000484236 SCAF1Q9H7N4 1312 aaKnown RBP12.13□□□□□ -0.47
SHROOM3-206ENST00000484236 PEG3Q9GZU2 1588 aa12.09□□□□□ -0.47
SHROOM3-206ENST00000484236 EIF4G1Q04637 1599 aaKnown RBP12.09□□□□□ -0.47
SHROOM3-206ENST00000484236 TRIM41Q8WV44 630 aa12.08□□□□□ -0.48
SHROOM3-206ENST00000484236 DCAF8L1A6NGE4 600 aa12.07□□□□□ -0.48
SHROOM3-206ENST00000484236 SMARCA2P51531 1590 aa12.05□□□□□ -0.48
SHROOM3-206ENST00000484236 RNF39Q9H2S5 420 aa12.02□□□□□ -0.49
SHROOM3-206ENST00000484236 CCDC88BA6NC98 1476 aa12.01□□□□□ -0.49
SHROOM3-206ENST00000484236 PABPN1Q86U42 306 aaKnown RBP eCLIP11.99□□□□□ -0.49
SHROOM3-206ENST00000484236 LOC105371045A0A1W2PR82 267 aa11.96□□□□□ -0.49
SHROOM3-206ENST00000484236 ATAD2BQ9ULI0 1458 aa11.92□□□□□ -0.5
SHROOM3-206ENST00000484236 BAZ1BQ9UIG0 1483 aaKnown RBP11.87□□□□□ -0.51
SHROOM3-206ENST00000484236 ABCC8Q09428 1581 aa11.83□□□□□ -0.52
SHROOM3-206ENST00000484236 HMGXB3Q12766 1538 aa11.82□□□□□ -0.52
SHROOM3-206ENST00000484236 EEA1Q15075 1411 aa11.82□□□□□ -0.52
SHROOM3-206ENST00000484236 NCAPD3P42695 1498 aa11.79□□□□□ -0.52
SHROOM3-206ENST00000484236 C1QBPQ07021 282 aaKnown RBP11.79□□□□□ -0.52
SHROOM3-206ENST00000484236 FAM9AQ8IZU1 332 aaPredicted RBP11.79□□□□□ -0.52
SHROOM3-206ENST00000484236 PCGF6Q9BYE7 350 aa11.77□□□□□ -0.53
SHROOM3-206ENST00000484236 TRIM26Q12899 539 aaPredicted RBP11.76□□□□□ -0.53
SHROOM3-206ENST00000484236 WRNQ14191 1432 aaPredicted RBP eCLIP11.76□□□□□ -0.53
SHROOM3-206ENST00000484236 HRCP23327 699 aa11.74□□□□□ -0.53
SHROOM3-206ENST00000484236 HOXD11P31277 338 aaPredicted RBP11.7□□□□□ -0.54
SHROOM3-206ENST00000484236 SYNJ1O43426 1573 aa11.68□□□□□ -0.54
SHROOM3-206ENST00000484236 SOGA1O94964 1423 aa11.67□□□□□ -0.54
SHROOM3-206ENST00000484236 POTEHQ6S545 545 aa11.66□□□□□ -0.54
SHROOM3-206ENST00000484236 TOP2BQ02880 1626 aa11.65□□□□□ -0.54
SHROOM3-206ENST00000484236 BIVM-ERCC5R4GMW8 1640 aa11.65□□□□□ -0.54
SHROOM3-206ENST00000484236 CSRNP3Q8WYN3 585 aa11.65□□□□□ -0.54
SHROOM3-206ENST00000484236 TNIKQ9UKE5 1360 aa11.65□□□□□ -0.55
SHROOM3-206ENST00000484236 PRDM2Q13029 1718 aa11.64□□□□□ -0.55
SHROOM3-206ENST00000484236 KIF21BO75037 1637 aa11.64□□□□□ -0.55
SHROOM3-206ENST00000484236 GOLGA3Q08378 1498 aa11.63□□□□□ -0.55
SHROOM3-206ENST00000484236 CFTRP13569 1480 aa11.61□□□□□ -0.55
SHROOM3-206ENST00000484236 CEP164Q9UPV0 1460 aa11.6□□□□□ -0.55
SHROOM3-206ENST00000484236 RUSC2Q8N2Y8 1516 aa11.6□□□□□ -0.55
SHROOM3-206ENST00000484236 CEP162Q5TB80 1403 aa11.58□□□□□ -0.56
SHROOM3-206ENST00000484236 EHMT2Q96KQ7 1210 aa11.55□□□□□ -0.56
SHROOM3-206ENST00000484236 CC2D2AQ9P2K1 1620 aa11.53□□□□□ -0.56
SHROOM3-206ENST00000484236 ZEB1P37275 1124 aaPredicted RBP11.52□□□□□ -0.57
SHROOM3-206ENST00000484236 CUX1P39880 1505 aa11.51□□□□□ -0.57
SHROOM3-206ENST00000484236 ERICH3Q5RHP9 1530 aa11.5□□□□□ -0.57
SHROOM3-206ENST00000484236 UBTFP17480 764 aaKnown RBP11.5□□□□□ -0.57
SHROOM3-206ENST00000484236 CADPSQ9ULU8 1353 aa11.49□□□□□ -0.57
SHROOM3-206ENST00000484236 KIF27Q86VH2 1401 aa11.45□□□□□ -0.58
SHROOM3-206ENST00000484236 PRXQ9BXM0 1461 aa11.44□□□□□ -0.58
SHROOM3-206ENST00000484236 PPP4R3CPQ6ZMV5 832 aa11.44□□□□□ -0.58
SHROOM3-206ENST00000484236 RAPGEF2Q9Y4G8 1499 aa11.44□□□□□ -0.58
SHROOM3-206ENST00000484236 RNF216Q9NWF9 866 aaPredicted RBP11.43□□□□□ -0.58
SHROOM3-206ENST00000484236 CLIP1P30622 1438 aa11.43□□□□□ -0.58
SHROOM3-206ENST00000484236 VPS8Q8N3P4 1428 aa11.39□□□□□ -0.59
SHROOM3-206ENST00000484236 DNAJC5BQ9UF47 199 aa11.37□□□□□ -0.59
SHROOM3-206ENST00000484236 CNKSR2Q8WXI2 1034 aa11.36□□□□□ -0.59
SHROOM3-206ENST00000484236 FANCD2Q9BXW9 1451 aa11.35□□□□□ -0.59
SHROOM3-206ENST00000484236 DNMBPQ6XZF7 1577 aa11.35□□□□□ -0.59
SHROOM3-206ENST00000484236 LAMC3Q9Y6N6 1575 aa11.35□□□□□ -0.59
SHROOM3-206ENST00000484236 FGD5Q6ZNL6 1462 aa11.33□□□□□ -0.6
SHROOM3-206ENST00000484236 PPARGC1BQ86YN6 1023 aaKnown RBP11.32□□□□□ -0.6
SHROOM3-206ENST00000484236 CUX2O14529 1486 aa11.32□□□□□ -0.6
SHROOM3-206ENST00000484236 IGF1RP08069 1367 aa11.28□□□□□ -0.6
SHROOM3-206ENST00000484236 APLP2Q06481 763 aa11.28□□□□□ -0.6
SHROOM3-206ENST00000484236 ABCA10Q8WWZ4 1543 aa11.27□□□□□ -0.61
SHROOM3-206ENST00000484236 TOPBP1Q92547 1522 aa11.27□□□□□ -0.61
SHROOM3-206ENST00000484236 ARAP1Q96P48 1450 aa11.26□□□□□ -0.61
SHROOM3-206ENST00000484236 CARMIL1Q5VZK9 1371 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms