RNA–Protein interactions for RNA: ENST00000482855.5

RPGR-208, Transcript of retinitis pigmentosa GTPase regulator, humanhuman

TSL 2

Gene RPGR, Length 2,819 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPGR-208ENST00000482855 NISCHQ9Y2I1 1504 aa22.14■■□□□ 1.13
RPGR-208ENST00000482855 CCDC180Q9P1Z9 1646 aa20.06■□□□□ 0.8
RPGR-208ENST00000482855 ABCC9O60706 1549 aa18.93■□□□□ 0.62
RPGR-208ENST00000482855 MYO15BQ96JP2 1530 aa18.83■□□□□ 0.61
RPGR-208ENST00000482855 NACADO15069 1562 aa18.71■□□□□ 0.59
RPGR-208ENST00000482855 DCAF1Q9Y4B6 1507 aa18.66■□□□□ 0.58
RPGR-208ENST00000482855 RB1CC1Q8TDY2 1594 aa18.66■□□□□ 0.58
RPGR-208ENST00000482855 HRCP23327 699 aa18.64■□□□□ 0.57
RPGR-208ENST00000482855 ZCCHC6Q5VYS8 1495 aaKnown RBP18.5■□□□□ 0.55
RPGR-208ENST00000482855 SHROOM4Q9ULL8 1493 aa18.4■□□□□ 0.54
RPGR-208ENST00000482855 SUPT5HO00267 1087 aaKnown RBP18.34■□□□□ 0.53
RPGR-208ENST00000482855 UNC13AQ9UPW8 1703 aa18.26■□□□□ 0.51
RPGR-208ENST00000482855 PCGF6Q9BYE7 350 aa18.22■□□□□ 0.51
RPGR-208ENST00000482855 PPARGC1BQ86YN6 1023 aaKnown RBP18.17■□□□□ 0.5
RPGR-208ENST00000482855 CHIC1Q5VXU3 224 aa18.08■□□□□ 0.48
RPGR-208ENST00000482855 PELP1Q8IZL8 1130 aaKnown RBP18.04■□□□□ 0.48
RPGR-208ENST00000482855 BICRAQ9NZM4 1560 aa18.04■□□□□ 0.48
RPGR-208ENST00000482855 SCRIBQ14160 1630 aa17.75■□□□□ 0.43
RPGR-208ENST00000482855 TRIM26Q12899 539 aaPredicted RBP17.7■□□□□ 0.42
RPGR-208ENST00000482855 DCAF8L2P0C7V8 631 aa17.63■□□□□ 0.41
RPGR-208ENST00000482855 LOC105371045A0A1W2PR82 267 aa17.61■□□□□ 0.41
RPGR-208ENST00000482855 ZEB1P37275 1124 aaPredicted RBP17.61■□□□□ 0.41
RPGR-208ENST00000482855 SCAF1Q9H7N4 1312 aaKnown RBP17.58■□□□□ 0.41
RPGR-208ENST00000482855 EIF4G1Q04637 1599 aaKnown RBP17.51■□□□□ 0.39
RPGR-208ENST00000482855 PABPN1Q86U42 306 aaKnown RBP eCLIP17.43■□□□□ 0.38
RPGR-208ENST00000482855 CC2D2AQ9P2K1 1620 aa17.4■□□□□ 0.38
RPGR-208ENST00000482855 MYT1Q01538 1121 aa17.37■□□□□ 0.37
RPGR-208ENST00000482855 PEG3Q9GZU2 1588 aa17.29■□□□□ 0.36
RPGR-208ENST00000482855 DNAJC5BQ9UF47 199 aa17.27■□□□□ 0.35
RPGR-208ENST00000482855 SMARCA4P51532 1647 aa17.22■□□□□ 0.35
RPGR-208ENST00000482855 BAZ1AQ9NRL2 1556 aaPredicted RBP17.22■□□□□ 0.35
RPGR-208ENST00000482855 ACIN1Q9UKV3 1341 aaKnown RBP17.2■□□□□ 0.34
RPGR-208ENST00000482855 HMGXB3Q12766 1538 aa17.2■□□□□ 0.34
RPGR-208ENST00000482855 SMARCA2P51531 1590 aa17.18■□□□□ 0.34
RPGR-208ENST00000482855 CECR2Q9BXF3 1484 aa17.18■□□□□ 0.34
RPGR-208ENST00000482855 NCAPD3P42695 1498 aa17.16■□□□□ 0.34
RPGR-208ENST00000482855 NEUROD1Q13562 356 aa17.11■□□□□ 0.33
RPGR-208ENST00000482855 ATAD2BQ9ULI0 1458 aa17.04■□□□□ 0.32
RPGR-208ENST00000482855 CENPBP07199 599 aaPredicted RBP17.04■□□□□ 0.32
RPGR-208ENST00000482855 GTF3C3Q9Y5Q9 886 aa17.04■□□□□ 0.32
RPGR-208ENST00000482855 TRIM41Q8WV44 630 aa17.01■□□□□ 0.31
RPGR-208ENST00000482855 FAM9AQ8IZU1 332 aaPredicted RBP16.94■□□□□ 0.3
RPGR-208ENST00000482855 DIEXFQ68CQ4 756 aaKnown RBP16.92■□□□□ 0.3
RPGR-208ENST00000482855 CCER1Q8TC90 406 aaPredicted RBP16.9■□□□□ 0.3
RPGR-208ENST00000482855 MROH2BQ7Z745 1585 aa16.9■□□□□ 0.3
RPGR-208ENST00000482855 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.88■□□□□ 0.29
RPGR-208ENST00000482855 BAZ1BQ9UIG0 1483 aaKnown RBP16.85■□□□□ 0.29
RPGR-208ENST00000482855 EHMT2Q96KQ7 1210 aa16.83■□□□□ 0.28
RPGR-208ENST00000482855 RSF1Q96T23 1441 aaPredicted RBP16.81■□□□□ 0.28
RPGR-208ENST00000482855 LAMC3Q9Y6N6 1575 aa16.78■□□□□ 0.28
RPGR-208ENST00000482855 TOP2AP11388 1531 aaKnown RBP16.75■□□□□ 0.27
RPGR-208ENST00000482855 WIZO95785 1651 aa16.72■□□□□ 0.27
RPGR-208ENST00000482855 PRDM2Q13029 1718 aa16.71■□□□□ 0.27
RPGR-208ENST00000482855 CUX2O14529 1486 aa16.62■□□□□ 0.25
RPGR-208ENST00000482855 ZNF316A6NFI3 1004 aaPredicted RBP16.6■□□□□ 0.25
RPGR-208ENST00000482855 YTHDC1Q96MU7 727 aaKnown RBP16.6■□□□□ 0.25
RPGR-208ENST00000482855 THOC2Q8NI27 1593 aaKnown RBP16.54■□□□□ 0.24
RPGR-208ENST00000482855 CFTRP13569 1480 aa16.5■□□□□ 0.23
RPGR-208ENST00000482855 CADPSQ9ULU8 1353 aa16.5■□□□□ 0.23
RPGR-208ENST00000482855 PDS5BQ9NTI5 1447 aa16.49■□□□□ 0.23
RPGR-208ENST00000482855 WRNQ14191 1432 aaPredicted RBP eCLIP16.48■□□□□ 0.23
RPGR-208ENST00000482855 KIF21AQ7Z4S6 1674 aa16.47■□□□□ 0.23
RPGR-208ENST00000482855 TTBK1Q5TCY1 1321 aaPredicted RBP16.46■□□□□ 0.22
RPGR-208ENST00000482855 MIER1Q8N108 512 aa16.45■□□□□ 0.22
RPGR-208ENST00000482855 WDR62O43379 1518 aa16.43■□□□□ 0.22
RPGR-208ENST00000482855 NESP48681 1621 aa16.39■□□□□ 0.21
RPGR-208ENST00000482855 ERCC6Q03468 1493 aa16.39■□□□□ 0.21
RPGR-208ENST00000482855 MRC2Q9UBG0 1479 aa16.36■□□□□ 0.21
RPGR-208ENST00000482855 CEP162Q5TB80 1403 aa16.36■□□□□ 0.21
RPGR-208ENST00000482855 CCDC88BA6NC98 1476 aa16.34■□□□□ 0.21
RPGR-208ENST00000482855 CLSPNQ9HAW4 1339 aa16.32■□□□□ 0.2
RPGR-208ENST00000482855 CEP164Q9UPV0 1460 aa16.31■□□□□ 0.2
RPGR-208ENST00000482855 ABCC8Q09428 1581 aa16.29■□□□□ 0.2
RPGR-208ENST00000482855 FANCD2Q9BXW9 1451 aa16.28■□□□□ 0.2
RPGR-208ENST00000482855 TNIKQ9UKE5 1360 aa16.26■□□□□ 0.19
RPGR-208ENST00000482855 WDR97A6NE52 1622 aa16.25■□□□□ 0.19
RPGR-208ENST00000482855 SUPT16HQ9Y5B9 1047 aaKnown RBP16.23■□□□□ 0.19
RPGR-208ENST00000482855 ANP32EQ9BTT0 268 aa16.22■□□□□ 0.19
RPGR-208ENST00000482855 DNMBPQ6XZF7 1577 aa16.18■□□□□ 0.18
RPGR-208ENST00000482855 HNRNPUL2Q1KMD3 747 aaKnown RBP16.16■□□□□ 0.18
RPGR-208ENST00000482855 TSHZ2Q9NRE2 1034 aa16.15■□□□□ 0.18
RPGR-208ENST00000482855 BCL11AQ9H165 835 aa16.14■□□□□ 0.17
RPGR-208ENST00000482855 URB2Q14146 1524 aaKnown RBP16.14■□□□□ 0.17
RPGR-208ENST00000482855 UBTFP17480 764 aaKnown RBP16.14■□□□□ 0.17
RPGR-208ENST00000482855 SOGA1O94964 1423 aa16.12■□□□□ 0.17
RPGR-208ENST00000482855 EEA1Q15075 1411 aa16.12■□□□□ 0.17
RPGR-208ENST00000482855 CSRNP3Q8WYN3 585 aa16.09■□□□□ 0.17
RPGR-208ENST00000482855 GOLGA3Q08378 1498 aa16.08■□□□□ 0.16
RPGR-208ENST00000482855 TOPBP1Q92547 1522 aa16.07■□□□□ 0.16
RPGR-208ENST00000482855 IFT140Q96RY7 1462 aa16.07■□□□□ 0.16
RPGR-208ENST00000482855 TARBP1Q13395 1621 aaKnown RBP16.03■□□□□ 0.16
RPGR-208ENST00000482855 BIVM-ERCC5R4GMW8 1640 aa16.02■□□□□ 0.15
RPGR-208ENST00000482855 RUSC2Q8N2Y8 1516 aa16.01■□□□□ 0.15
RPGR-208ENST00000482855 APLP2Q06481 763 aa15.94■□□□□ 0.14
RPGR-208ENST00000482855 CLIP1P30622 1438 aa15.92■□□□□ 0.14
RPGR-208ENST00000482855 VPS8Q8N3P4 1428 aa15.92■□□□□ 0.14
RPGR-208ENST00000482855 TOP2BQ02880 1626 aa15.92■□□□□ 0.14
RPGR-208ENST00000482855 CUX1P39880 1505 aa15.91■□□□□ 0.14
RPGR-208ENST00000482855 DHX57Q6P158 1386 aaKnown RBP15.89■□□□□ 0.14
RPGR-208ENST00000482855 POLA1P09884 1462 aaPredicted RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms