RNA–Protein interactions for RNA: ENST00000482741.1

TVP23B-203, Transcript of trans-golgi network vesicle protein 23 homolog B, humanhuman

TSL 2

Gene TVP23B, Length 3,298 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23B-203ENST00000482741 NISCHQ9Y2I1 1504 aa19.46■□□□□ 0.71
TVP23B-203ENST00000482741 CCDC180Q9P1Z9 1646 aa18.06■□□□□ 0.48
TVP23B-203ENST00000482741 CHIC1Q5VXU3 224 aa17.62■□□□□ 0.41
TVP23B-203ENST00000482741 AEBP2Q6ZN18 517 aaPredicted RBP17.15■□□□□ 0.34
TVP23B-203ENST00000482741 MYO15BQ96JP2 1530 aa17.09■□□□□ 0.33
TVP23B-203ENST00000482741 DCAF1Q9Y4B6 1507 aa17.01■□□□□ 0.31
TVP23B-203ENST00000482741 ZCCHC6Q5VYS8 1495 aaKnown RBP16.53■□□□□ 0.24
TVP23B-203ENST00000482741 EHMT2Q96KQ7 1210 aa16.51■□□□□ 0.23
TVP23B-203ENST00000482741 NACADO15069 1562 aa16.36■□□□□ 0.21
TVP23B-203ENST00000482741 SHROOM4Q9ULL8 1493 aa16.36■□□□□ 0.21
TVP23B-203ENST00000482741 UNC13AQ9UPW8 1703 aa16.11■□□□□ 0.17
TVP23B-203ENST00000482741 SLC24A1O60721 1099 aa16.06■□□□□ 0.16
TVP23B-203ENST00000482741 PHF23Q9BUL5 403 aaPredicted RBP16.06■□□□□ 0.16
TVP23B-203ENST00000482741 RB1CC1Q8TDY2 1594 aa16.03■□□□□ 0.16
TVP23B-203ENST00000482741 BICRAQ9NZM4 1560 aa15.68■□□□□ 0.1
TVP23B-203ENST00000482741 PEG3Q9GZU2 1588 aa15.64■□□□□ 0.09
TVP23B-203ENST00000482741 PLPPR3Q6T4P5 718 aa15.63■□□□□ 0.09
TVP23B-203ENST00000482741 ABCC9O60706 1549 aa15.52■□□□□ 0.07
TVP23B-203ENST00000482741 SMARCA2P51531 1590 aa15.34■□□□□ 0.05
TVP23B-203ENST00000482741 PRDM2Q13029 1718 aa15.27■□□□□ 0.04
TVP23B-203ENST00000482741 KCNA4P22459 653 aa15.26■□□□□ 0.03
TVP23B-203ENST00000482741 RTN4Q9NQC3 1192 aaKnown RBP15.24■□□□□ 0.03
TVP23B-203ENST00000482741 HMGXB3Q12766 1538 aa15.17■□□□□ 0.02
TVP23B-203ENST00000482741 SMARCA4P51532 1647 aa15.14■□□□□ 0.01
TVP23B-203ENST00000482741 BAZ1AQ9NRL2 1556 aaPredicted RBP15.11■□□□□ 0.01
TVP23B-203ENST00000482741 SCRIBQ14160 1630 aa15.1■□□□□ 0.01
TVP23B-203ENST00000482741 CSRNP3Q8WYN3 585 aa15.06■□□□□ 0
TVP23B-203ENST00000482741 EIF4G1Q04637 1599 aaKnown RBP15.03■□□□□ -0
TVP23B-203ENST00000482741 TOP2AP11388 1531 aaKnown RBP14.88□□□□□ -0.03
TVP23B-203ENST00000482741 NCAPD3P42695 1498 aa14.84□□□□□ -0.03
TVP23B-203ENST00000482741 ADRA2BP18089 450 aa14.71□□□□□ -0.05
TVP23B-203ENST00000482741 WDR97A6NE52 1622 aa14.71□□□□□ -0.05
TVP23B-203ENST00000482741 MROH2BQ7Z745 1585 aa14.66□□□□□ -0.06
TVP23B-203ENST00000482741 CC2D2AQ9P2K1 1620 aa14.64□□□□□ -0.07
TVP23B-203ENST00000482741 ATAD2BQ9ULI0 1458 aa14.63□□□□□ -0.07
TVP23B-203ENST00000482741 RSF1Q96T23 1441 aaPredicted RBP14.6□□□□□ -0.07
TVP23B-203ENST00000482741 WIZO95785 1651 aa14.59□□□□□ -0.07
TVP23B-203ENST00000482741 LAMC3Q9Y6N6 1575 aa14.55□□□□□ -0.08
TVP23B-203ENST00000482741 SLC4A1APQ9BWU0 796 aaKnown RBP14.54□□□□□ -0.08
TVP23B-203ENST00000482741 PRKCSHP14314 528 aaPredicted RBP14.53□□□□□ -0.08
TVP23B-203ENST00000482741 BIVM-ERCC5R4GMW8 1640 aa14.53□□□□□ -0.08
TVP23B-203ENST00000482741 CECR2Q9BXF3 1484 aa14.48□□□□□ -0.09
TVP23B-203ENST00000482741 AMER1Q5JTC6 1135 aaPredicted RBP14.46□□□□□ -0.1
TVP23B-203ENST00000482741 CFTRP13569 1480 aa14.33□□□□□ -0.12
TVP23B-203ENST00000482741 THOC2Q8NI27 1593 aaKnown RBP14.3□□□□□ -0.12
TVP23B-203ENST00000482741 BAZ1BQ9UIG0 1483 aaKnown RBP14.29□□□□□ -0.12
TVP23B-203ENST00000482741 WDR62O43379 1518 aa14.23□□□□□ -0.13
TVP23B-203ENST00000482741 TOP2BQ02880 1626 aa14.22□□□□□ -0.13
TVP23B-203ENST00000482741 ABCC8Q09428 1581 aa14.17□□□□□ -0.14
TVP23B-203ENST00000482741 CCDC88BA6NC98 1476 aa14.16□□□□□ -0.14
TVP23B-203ENST00000482741 KIF21AQ7Z4S6 1674 aa14.15□□□□□ -0.14
TVP23B-203ENST00000482741 DNMBPQ6XZF7 1577 aa14.13□□□□□ -0.15
TVP23B-203ENST00000482741 ZBTB22O15209 634 aa14.12□□□□□ -0.15
TVP23B-203ENST00000482741 NCBP3Q53F19 620 aaKnown RBP14.11□□□□□ -0.15
TVP23B-203ENST00000482741 ABCA5Q8WWZ7 1642 aa14.07□□□□□ -0.16
TVP23B-203ENST00000482741 TARBP1Q13395 1621 aaKnown RBP14.07□□□□□ -0.16
TVP23B-203ENST00000482741 CUX2O14529 1486 aa14.01□□□□□ -0.17
TVP23B-203ENST00000482741 PPP6R1Q9UPN7 881 aa13.97□□□□□ -0.17
TVP23B-203ENST00000482741 CUL7Q14999 1698 aa13.95□□□□□ -0.18
TVP23B-203ENST00000482741 PBRM1Q86U86 1689 aa13.94□□□□□ -0.18
TVP23B-203ENST00000482741 CADPSQ9ULU8 1353 aa13.93□□□□□ -0.18
TVP23B-203ENST00000482741 KIF21BO75037 1637 aa13.9□□□□□ -0.18
TVP23B-203ENST00000482741 SYNJ1O43426 1573 aa13.88□□□□□ -0.19
TVP23B-203ENST00000482741 ERICH3Q5RHP9 1530 aa13.87□□□□□ -0.19
TVP23B-203ENST00000482741 CUX1P39880 1505 aa13.86□□□□□ -0.19
TVP23B-203ENST00000482741 ABCA10Q8WWZ4 1543 aa13.86□□□□□ -0.19
TVP23B-203ENST00000482741 MRC2Q9UBG0 1479 aa13.85□□□□□ -0.19
TVP23B-203ENST00000482741 DAXXQ9UER7 740 aaPredicted RBP13.81□□□□□ -0.2
TVP23B-203ENST00000482741 EEA1Q15075 1411 aa13.8□□□□□ -0.2
TVP23B-203ENST00000482741 SHROOM2Q13796 1616 aa13.79□□□□□ -0.2
TVP23B-203ENST00000482741 TIMELESSQ9UNS1 1208 aa13.79□□□□□ -0.2
TVP23B-203ENST00000482741 PDS5BQ9NTI5 1447 aa13.78□□□□□ -0.2
TVP23B-203ENST00000482741 URB2Q14146 1524 aaKnown RBP13.77□□□□□ -0.2
TVP23B-203ENST00000482741 TOPBP1Q92547 1522 aa13.77□□□□□ -0.2
TVP23B-203ENST00000482741 CTTNBP2Q8WZ74 1663 aa13.76□□□□□ -0.21
TVP23B-203ENST00000482741 CEP164Q9UPV0 1460 aa13.75□□□□□ -0.21
TVP23B-203ENST00000482741 SENP3Q9H4L4 574 aaPredicted RBP13.75□□□□□ -0.21
TVP23B-203ENST00000482741 FANCD2Q9BXW9 1451 aa13.74□□□□□ -0.21
TVP23B-203ENST00000482741 TPRNQ4KMQ1 711 aa13.74□□□□□ -0.21
TVP23B-203ENST00000482741 TAOK2Q9UL54 1235 aa13.73□□□□□ -0.21
TVP23B-203ENST00000482741 TULP1O00294 542 aaPredicted RBP13.72□□□□□ -0.21
TVP23B-203ENST00000482741 NPM3O75607 178 aaKnown RBP13.71□□□□□ -0.21
TVP23B-203ENST00000482741 ADAMTS12P58397 1594 aa13.71□□□□□ -0.21
TVP23B-203ENST00000482741 FKBP8Q14318 412 aa13.7□□□□□ -0.22
TVP23B-203ENST00000482741 IFT140Q96RY7 1462 aa13.7□□□□□ -0.22
TVP23B-203ENST00000482741 HAP1P54257 671 aaPredicted RBP13.68□□□□□ -0.22
TVP23B-203ENST00000482741 EIF4G3O43432 1585 aaKnown RBP13.64□□□□□ -0.23
TVP23B-203ENST00000482741 PABPN1Q86U42 306 aaKnown RBP eCLIP13.63□□□□□ -0.23
TVP23B-203ENST00000482741 SAMD9Q5K651 1589 aa13.61□□□□□ -0.23
TVP23B-203ENST00000482741 NESP48681 1621 aa13.59□□□□□ -0.23
TVP23B-203ENST00000482741 POLA1P09884 1462 aaPredicted RBP13.59□□□□□ -0.23
TVP23B-203ENST00000482741 CLASP1Q7Z460 1538 aa13.58□□□□□ -0.24
TVP23B-203ENST00000482741 MAGI1Q96QZ7 1491 aaPredicted RBP13.57□□□□□ -0.24
TVP23B-203ENST00000482741 WRNQ14191 1432 aaPredicted RBP eCLIP13.56□□□□□ -0.24
TVP23B-203ENST00000482741 PRXQ9BXM0 1461 aa13.55□□□□□ -0.24
TVP23B-203ENST00000482741 PPP4R3CPQ6ZMV5 832 aa13.55□□□□□ -0.24
TVP23B-203ENST00000482741 RUSC2Q8N2Y8 1516 aa13.53□□□□□ -0.24
TVP23B-203ENST00000482741 DCAF8L2P0C7V8 631 aa13.53□□□□□ -0.24
TVP23B-203ENST00000482741 PLCB2Q00722 1185 aa13.51□□□□□ -0.25
TVP23B-203ENST00000482741 FGD5Q6ZNL6 1462 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms