RNA–Protein interactions for RNA: ENST00000479866.5

RAPGEF3-209, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 3,917 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-209ENST00000479866 NISCHQ9Y2I1 1504 aa23.77■■□□□ 1.4
RAPGEF3-209ENST00000479866 DCAF8L2P0C7V8 631 aa21.42■■□□□ 1.02
RAPGEF3-209ENST00000479866 SHROOM4Q9ULL8 1493 aa20.78■□□□□ 0.92
RAPGEF3-209ENST00000479866 SUPT5HO00267 1087 aaKnown RBP20.27■□□□□ 0.84
RAPGEF3-209ENST00000479866 ABCC9O60706 1549 aa20.12■□□□□ 0.81
RAPGEF3-209ENST00000479866 CCDC180Q9P1Z9 1646 aa20.11■□□□□ 0.81
RAPGEF3-209ENST00000479866 ZCCHC6Q5VYS8 1495 aaKnown RBP19.84■□□□□ 0.77
RAPGEF3-209ENST00000479866 PABPN1Q86U42 306 aaKnown RBP eCLIP19.41■□□□□ 0.7
RAPGEF3-209ENST00000479866 SCRIBQ14160 1630 aa19.35■□□□□ 0.69
RAPGEF3-209ENST00000479866 DCAF1Q9Y4B6 1507 aa19.14■□□□□ 0.66
RAPGEF3-209ENST00000479866 NACADO15069 1562 aa19.07■□□□□ 0.64
RAPGEF3-209ENST00000479866 EHMT2Q96KQ7 1210 aa19.05■□□□□ 0.64
RAPGEF3-209ENST00000479866 RB1CC1Q8TDY2 1594 aa19.04■□□□□ 0.64
RAPGEF3-209ENST00000479866 PELP1Q8IZL8 1130 aaKnown RBP18.91■□□□□ 0.62
RAPGEF3-209ENST00000479866 FAM9AQ8IZU1 332 aaPredicted RBP18.91■□□□□ 0.62
RAPGEF3-209ENST00000479866 CHIC1Q5VXU3 224 aa18.82■□□□□ 0.6
RAPGEF3-209ENST00000479866 TRIM41Q8WV44 630 aa18.79■□□□□ 0.6
RAPGEF3-209ENST00000479866 MYO15BQ96JP2 1530 aa18.78■□□□□ 0.6
RAPGEF3-209ENST00000479866 CECR2Q9BXF3 1484 aa18.76■□□□□ 0.59
RAPGEF3-209ENST00000479866 RSF1Q96T23 1441 aaPredicted RBP18.71■□□□□ 0.59
RAPGEF3-209ENST00000479866 MYT1Q01538 1121 aa18.68■□□□□ 0.58
RAPGEF3-209ENST00000479866 MROH2BQ7Z745 1585 aa18.52■□□□□ 0.55
RAPGEF3-209ENST00000479866 LOC105371045A0A1W2PR82 267 aa18.52■□□□□ 0.55
RAPGEF3-209ENST00000479866 BAZ1AQ9NRL2 1556 aaPredicted RBP18.38■□□□□ 0.53
RAPGEF3-209ENST00000479866 RANGAP1P46060 587 aaPredicted RBP18.34■□□□□ 0.53
RAPGEF3-209ENST00000479866 WIZO95785 1651 aa18.32■□□□□ 0.52
RAPGEF3-209ENST00000479866 TTBK1Q5TCY1 1321 aaPredicted RBP18.21■□□□□ 0.51
RAPGEF3-209ENST00000479866 UBTFP17480 764 aaKnown RBP18.21■□□□□ 0.51
RAPGEF3-209ENST00000479866 BAZ1BQ9UIG0 1483 aaKnown RBP18.18■□□□□ 0.5
RAPGEF3-209ENST00000479866 BICRAQ9NZM4 1560 aa18.16■□□□□ 0.5
RAPGEF3-209ENST00000479866 SMARCA4P51532 1647 aa18.15■□□□□ 0.5
RAPGEF3-209ENST00000479866 UNC13AQ9UPW8 1703 aa18.13■□□□□ 0.49
RAPGEF3-209ENST00000479866 PPARGC1BQ86YN6 1023 aaKnown RBP18.1■□□□□ 0.49
RAPGEF3-209ENST00000479866 CCDC88BA6NC98 1476 aa18.09■□□□□ 0.49
RAPGEF3-209ENST00000479866 PCGF6Q9BYE7 350 aa18.06■□□□□ 0.48
RAPGEF3-209ENST00000479866 ATAD2BQ9ULI0 1458 aa18.04■□□□□ 0.48
RAPGEF3-209ENST00000479866 TOP2AP11388 1531 aaKnown RBP17.98■□□□□ 0.47
RAPGEF3-209ENST00000479866 SMARCA2P51531 1590 aa17.94■□□□□ 0.46
RAPGEF3-209ENST00000479866 EIF4G1Q04637 1599 aaKnown RBP17.9■□□□□ 0.46
RAPGEF3-209ENST00000479866 ABCC8Q09428 1581 aa17.9■□□□□ 0.46
RAPGEF3-209ENST00000479866 CSRNP3Q8WYN3 585 aa17.87■□□□□ 0.45
RAPGEF3-209ENST00000479866 APLP2Q06481 763 aa17.84■□□□□ 0.45
RAPGEF3-209ENST00000479866 WRNQ14191 1432 aaPredicted RBP eCLIP17.83■□□□□ 0.44
RAPGEF3-209ENST00000479866 ATP1B4Q9UN42 357 aaPredicted RBP17.81■□□□□ 0.44
RAPGEF3-209ENST00000479866 DNAJC5BQ9UF47 199 aa17.76■□□□□ 0.43
RAPGEF3-209ENST00000479866 SOGA1O94964 1423 aa17.72■□□□□ 0.43
RAPGEF3-209ENST00000479866 NCAPD3P42695 1498 aa17.72■□□□□ 0.43
RAPGEF3-209ENST00000479866 CC2D2AQ9P2K1 1620 aa17.66■□□□□ 0.42
RAPGEF3-209ENST00000479866 CADPSQ9ULU8 1353 aa17.62■□□□□ 0.41
RAPGEF3-209ENST00000479866 TRIM26Q12899 539 aaPredicted RBP17.59■□□□□ 0.41
RAPGEF3-209ENST00000479866 P3H3Q8IVL6 736 aa17.57■□□□□ 0.4
RAPGEF3-209ENST00000479866 PRKCSHP14314 528 aaPredicted RBP17.56■□□□□ 0.4
RAPGEF3-209ENST00000479866 RUSC2Q8N2Y8 1516 aa17.56■□□□□ 0.4
RAPGEF3-209ENST00000479866 FBLN2P98095 1184 aa17.55■□□□□ 0.4
RAPGEF3-209ENST00000479866 ERICH6Q7L0X2 663 aa17.51■□□□□ 0.39
RAPGEF3-209ENST00000479866 PEG3Q9GZU2 1588 aa17.51■□□□□ 0.39
RAPGEF3-209ENST00000479866 NESP48681 1621 aa17.49■□□□□ 0.39
RAPGEF3-209ENST00000479866 HMGXB3Q12766 1538 aa17.48■□□□□ 0.39
RAPGEF3-209ENST00000479866 KIF27Q86VH2 1401 aa17.42■□□□□ 0.38
RAPGEF3-209ENST00000479866 FANCD2Q9BXW9 1451 aa17.42■□□□□ 0.38
RAPGEF3-209ENST00000479866 EEA1Q15075 1411 aa17.42■□□□□ 0.38
RAPGEF3-209ENST00000479866 CUX2O14529 1486 aa17.41■□□□□ 0.38
RAPGEF3-209ENST00000479866 CFTRP13569 1480 aa17.4■□□□□ 0.38
RAPGEF3-209ENST00000479866 ITGAEP38570 1179 aa17.4■□□□□ 0.38
RAPGEF3-209ENST00000479866 HNRNPUL2Q1KMD3 747 aaKnown RBP17.4■□□□□ 0.38
RAPGEF3-209ENST00000479866 ERCC6Q03468 1493 aa17.38■□□□□ 0.37
RAPGEF3-209ENST00000479866 CEP162Q5TB80 1403 aa17.38■□□□□ 0.37
RAPGEF3-209ENST00000479866 GOLGA3Q08378 1498 aa17.37■□□□□ 0.37
RAPGEF3-209ENST00000479866 PDS5BQ9NTI5 1447 aa17.37■□□□□ 0.37
RAPGEF3-209ENST00000479866 SYNJ1O43426 1573 aa17.37■□□□□ 0.37
RAPGEF3-209ENST00000479866 ARID3CA6NKF2 412 aa17.36■□□□□ 0.37
RAPGEF3-209ENST00000479866 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.36■□□□□ 0.37
RAPGEF3-209ENST00000479866 TDRD9Q8NDG6 1382 aaKnown RBP17.36■□□□□ 0.37
RAPGEF3-209ENST00000479866 CCER1Q8TC90 406 aaPredicted RBP17.35■□□□□ 0.37
RAPGEF3-209ENST00000479866 CLIP1P30622 1438 aa17.32■□□□□ 0.36
RAPGEF3-209ENST00000479866 CEP164Q9UPV0 1460 aa17.32■□□□□ 0.36
RAPGEF3-209ENST00000479866 TNIKQ9UKE5 1360 aa17.31■□□□□ 0.36
RAPGEF3-209ENST00000479866 RAD54L2Q9Y4B4 1467 aa17.26■□□□□ 0.35
RAPGEF3-209ENST00000479866 CARMIL1Q5VZK9 1371 aa17.26■□□□□ 0.35
RAPGEF3-209ENST00000479866 SLC24A1O60721 1099 aa17.26■□□□□ 0.35
RAPGEF3-209ENST00000479866 BCL11AQ9H165 835 aa17.26■□□□□ 0.35
RAPGEF3-209ENST00000479866 RAPGEF2Q9Y4G8 1499 aa17.25■□□□□ 0.35
RAPGEF3-209ENST00000479866 FGD5Q6ZNL6 1462 aa17.25■□□□□ 0.35
RAPGEF3-209ENST00000479866 CUX1P39880 1505 aa17.24■□□□□ 0.35
RAPGEF3-209ENST00000479866 CHMP7Q8WUX9 453 aaPredicted RBP17.2■□□□□ 0.34
RAPGEF3-209ENST00000479866 HRCP23327 699 aa17.19■□□□□ 0.34
RAPGEF3-209ENST00000479866 TOP2BQ02880 1626 aa17.14■□□□□ 0.33
RAPGEF3-209ENST00000479866 FAM50AQ14320 339 aaKnown RBP17.14■□□□□ 0.33
RAPGEF3-209ENST00000479866 IGF1RP08069 1367 aa17.12■□□□□ 0.33
RAPGEF3-209ENST00000479866 TOPBP1Q92547 1522 aa17.09■□□□□ 0.33
RAPGEF3-209ENST00000479866 POLA1P09884 1462 aaPredicted RBP17.06■□□□□ 0.32
RAPGEF3-209ENST00000479866 AQRO60306 1485 aaKnown RBP eCLIP17.04■□□□□ 0.32
RAPGEF3-209ENST00000479866 LAMC3Q9Y6N6 1575 aa17.01■□□□□ 0.31
RAPGEF3-209ENST00000479866 ZEB1P37275 1124 aaPredicted RBP16.99■□□□□ 0.31
RAPGEF3-209ENST00000479866 URB2Q14146 1524 aaKnown RBP16.99■□□□□ 0.31
RAPGEF3-209ENST00000479866 GAPVD1Q14C86 1478 aa16.98■□□□□ 0.31
RAPGEF3-209ENST00000479866 KANK4Q5T7N3 995 aaPredicted RBP16.98■□□□□ 0.31
RAPGEF3-209ENST00000479866 SCAF1Q9H7N4 1312 aaKnown RBP16.97■□□□□ 0.31
RAPGEF3-209ENST00000479866 DNMBPQ6XZF7 1577 aa16.95■□□□□ 0.3
RAPGEF3-209ENST00000479866 VPS8Q8N3P4 1428 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms