RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 AEBP2Q6ZN18 517 aaPredicted RBP19.48■□□□□ 0.71
ATG4A-207ENST00000474825 CHIC1Q5VXU3 224 aa18.24■□□□□ 0.51
ATG4A-207ENST00000474825 SENP3Q9H4L4 574 aaPredicted RBP16.73■□□□□ 0.27
ATG4A-207ENST00000474825 PHF23Q9BUL5 403 aaPredicted RBP16.41■□□□□ 0.22
ATG4A-207ENST00000474825 FOXD1Q16676 465 aa15.61■□□□□ 0.09
ATG4A-207ENST00000474825 NISCHQ9Y2I1 1504 aa15.3■□□□□ 0.04
ATG4A-207ENST00000474825 POTEDQ86YR6 584 aa15.17■□□□□ 0.02
ATG4A-207ENST00000474825 MSH5O43196 834 aa14.82□□□□□ -0.04
ATG4A-207ENST00000474825 PIAS4Q8N2W9 510 aaPredicted RBP14.47□□□□□ -0.09
ATG4A-207ENST00000474825 PLPPR3Q6T4P5 718 aa14.27□□□□□ -0.13
ATG4A-207ENST00000474825 PPP6R1Q9UPN7 881 aa14.23□□□□□ -0.13
ATG4A-207ENST00000474825 ADRA2BP18089 450 aa14.14□□□□□ -0.15
ATG4A-207ENST00000474825 CCDC180Q9P1Z9 1646 aa13.36□□□□□ -0.27
ATG4A-207ENST00000474825 DMRT2Q9Y5R5 561 aa13.2□□□□□ -0.3
ATG4A-207ENST00000474825 MAPK8IP2Q13387 824 aaPredicted RBP13.11□□□□□ -0.31
ATG4A-207ENST00000474825 SCAF1Q9H7N4 1312 aaKnown RBP13.01□□□□□ -0.33
ATG4A-207ENST00000474825 CACNB1Q02641 598 aaPredicted RBP12.93□□□□□ -0.34
ATG4A-207ENST00000474825 ZCCHC6Q5VYS8 1495 aaKnown RBP12.85□□□□□ -0.35
ATG4A-207ENST00000474825 DCAF1Q9Y4B6 1507 aa12.74□□□□□ -0.37
ATG4A-207ENST00000474825 ABCC9O60706 1549 aa12.72□□□□□ -0.37
ATG4A-207ENST00000474825 MYO15BQ96JP2 1530 aa12.64□□□□□ -0.39
ATG4A-207ENST00000474825 DCAF8L1A6NGE4 600 aa12.59□□□□□ -0.39
ATG4A-207ENST00000474825 RNF39Q9H2S5 420 aa12.59□□□□□ -0.39
ATG4A-207ENST00000474825 HOXD11P31277 338 aaPredicted RBP12.55□□□□□ -0.4
ATG4A-207ENST00000474825 NACADO15069 1562 aa12.49□□□□□ -0.41
ATG4A-207ENST00000474825 DCAF8L2P0C7V8 631 aa12.47□□□□□ -0.41
ATG4A-207ENST00000474825 PPP4R3CPQ6ZMV5 832 aa12.43□□□□□ -0.42
ATG4A-207ENST00000474825 C1QBPQ07021 282 aaKnown RBP12.4□□□□□ -0.42
ATG4A-207ENST00000474825 RB1CC1Q8TDY2 1594 aa12.36□□□□□ -0.43
ATG4A-207ENST00000474825 RNF216Q9NWF9 866 aaPredicted RBP12.34□□□□□ -0.43
ATG4A-207ENST00000474825 CNKSR2Q8WXI2 1034 aa12.32□□□□□ -0.44
ATG4A-207ENST00000474825 DNAJC5BQ9UF47 199 aa12.27□□□□□ -0.45
ATG4A-207ENST00000474825 SHROOM4Q9ULL8 1493 aa12.24□□□□□ -0.45
ATG4A-207ENST00000474825 SCRIBQ14160 1630 aa12.17□□□□□ -0.46
ATG4A-207ENST00000474825 UNC13AQ9UPW8 1703 aa12.03□□□□□ -0.48
ATG4A-207ENST00000474825 BICRAQ9NZM4 1560 aa12.01□□□□□ -0.49
ATG4A-207ENST00000474825 PABPN1Q86U42 306 aaKnown RBP eCLIP11.91□□□□□ -0.5
ATG4A-207ENST00000474825 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.9□□□□□ -0.5
ATG4A-207ENST00000474825 CECR2Q9BXF3 1484 aa11.86□□□□□ -0.51
ATG4A-207ENST00000474825 NCBP3Q53F19 620 aaKnown RBP11.84□□□□□ -0.51
ATG4A-207ENST00000474825 RSF1Q96T23 1441 aaPredicted RBP11.84□□□□□ -0.51
ATG4A-207ENST00000474825 POTEHQ6S545 545 aa11.81□□□□□ -0.52
ATG4A-207ENST00000474825 BAZ1AQ9NRL2 1556 aaPredicted RBP11.8□□□□□ -0.52
ATG4A-207ENST00000474825 MROH2BQ7Z745 1585 aa11.78□□□□□ -0.52
ATG4A-207ENST00000474825 SUPT5HO00267 1087 aaKnown RBP11.76□□□□□ -0.53
ATG4A-207ENST00000474825 SMARCA4P51532 1647 aa11.73□□□□□ -0.53
ATG4A-207ENST00000474825 PEG3Q9GZU2 1588 aa11.68□□□□□ -0.54
ATG4A-207ENST00000474825 NPM3O75607 178 aaKnown RBP11.65□□□□□ -0.54
ATG4A-207ENST00000474825 EIF4G1Q04637 1599 aaKnown RBP11.63□□□□□ -0.55
ATG4A-207ENST00000474825 DSG3P32926 999 aa11.63□□□□□ -0.55
ATG4A-207ENST00000474825 U3KPZ7 1027 aaPredicted RBP11.63□□□□□ -0.55
ATG4A-207ENST00000474825 WIZO95785 1651 aa11.62□□□□□ -0.55
ATG4A-207ENST00000474825 ATAD2BQ9ULI0 1458 aa11.61□□□□□ -0.55
ATG4A-207ENST00000474825 SMARCA2P51531 1590 aa11.58□□□□□ -0.55
ATG4A-207ENST00000474825 NCAPD3P42695 1498 aa11.57□□□□□ -0.56
ATG4A-207ENST00000474825 TOP2AP11388 1531 aaKnown RBP11.57□□□□□ -0.56
ATG4A-207ENST00000474825 SPINK5Q9NQ38 1064 aaPredicted RBP11.56□□□□□ -0.56
ATG4A-207ENST00000474825 CAPN15O75808 1086 aa11.55□□□□□ -0.56
ATG4A-207ENST00000474825 HMGXB3Q12766 1538 aa11.5□□□□□ -0.57
ATG4A-207ENST00000474825 CC2D2AQ9P2K1 1620 aa11.49□□□□□ -0.57
ATG4A-207ENST00000474825 BAZ1BQ9UIG0 1483 aaKnown RBP11.48□□□□□ -0.57
ATG4A-207ENST00000474825 CCDC88BA6NC98 1476 aa11.44□□□□□ -0.58
ATG4A-207ENST00000474825 APLP2Q06481 763 aa11.3□□□□□ -0.6
ATG4A-207ENST00000474825 ZNF219Q9P2Y4 722 aaPredicted RBP11.29□□□□□ -0.6
ATG4A-207ENST00000474825 CFTRP13569 1480 aa11.26□□□□□ -0.61
ATG4A-207ENST00000474825 TRHP20396 242 aaPredicted RBP11.26□□□□□ -0.61
ATG4A-207ENST00000474825 SLC4A2P04920 1241 aa11.24□□□□□ -0.61
ATG4A-207ENST00000474825 ABCB7O75027 752 aa11.23□□□□□ -0.61
ATG4A-207ENST00000474825 CADPSQ9ULU8 1353 aa11.23□□□□□ -0.61
ATG4A-207ENST00000474825 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.18□□□□□ -0.62
ATG4A-207ENST00000474825 HNRNPUL2Q1KMD3 747 aaKnown RBP11.18□□□□□ -0.62
ATG4A-207ENST00000474825 RBM42Q9BTD8 480 aaKnown RBP11.15□□□□□ -0.62
ATG4A-207ENST00000474825 LAMC3Q9Y6N6 1575 aa11.13□□□□□ -0.63
ATG4A-207ENST00000474825 TRIM41Q8WV44 630 aa11.12□□□□□ -0.63
ATG4A-207ENST00000474825 WRNQ14191 1432 aaPredicted RBP eCLIP11.11□□□□□ -0.63
ATG4A-207ENST00000474825 ABCC8Q09428 1581 aa11.1□□□□□ -0.63
ATG4A-207ENST00000474825 SAMD1Q6SPF0 538 aaPredicted RBP11.09□□□□□ -0.63
ATG4A-207ENST00000474825 PRDM2Q13029 1718 aa11.09□□□□□ -0.63
ATG4A-207ENST00000474825 NESP48681 1621 aa11.07□□□□□ -0.64
ATG4A-207ENST00000474825 FANCD2Q9BXW9 1451 aa11.06□□□□□ -0.64
ATG4A-207ENST00000474825 PDS5BQ9NTI5 1447 aa11.05□□□□□ -0.64
ATG4A-207ENST00000474825 TOP2BQ02880 1626 aa11.04□□□□□ -0.64
ATG4A-207ENST00000474825 SYNJ1O43426 1573 aa11.03□□□□□ -0.64
ATG4A-207ENST00000474825 CHRDL2Q6WN34 429 aa11.03□□□□□ -0.64
ATG4A-207ENST00000474825 ERCC6Q03468 1493 aa11.02□□□□□ -0.65
ATG4A-207ENST00000474825 CUX1P39880 1505 aa11.02□□□□□ -0.65
ATG4A-207ENST00000474825 BIVM-ERCC5R4GMW8 1640 aa11.02□□□□□ -0.65
ATG4A-207ENST00000474825 KCNA4P22459 653 aa11.01□□□□□ -0.65
ATG4A-207ENST00000474825 CEP164Q9UPV0 1460 aa10.99□□□□□ -0.65
ATG4A-207ENST00000474825 EEA1Q15075 1411 aa10.96□□□□□ -0.65
ATG4A-207ENST00000474825 DNMBPQ6XZF7 1577 aa10.94□□□□□ -0.66
ATG4A-207ENST00000474825 CUX2O14529 1486 aa10.94□□□□□ -0.66
ATG4A-207ENST00000474825 DNAJC5Q9H3Z4 198 aa10.94□□□□□ -0.66
ATG4A-207ENST00000474825 URB2Q14146 1524 aaKnown RBP10.94□□□□□ -0.66
ATG4A-207ENST00000474825 TOPBP1Q92547 1522 aa10.94□□□□□ -0.66
ATG4A-207ENST00000474825 SOGA1O94964 1423 aa10.92□□□□□ -0.66
ATG4A-207ENST00000474825 KIF21AQ7Z4S6 1674 aa10.89□□□□□ -0.67
ATG4A-207ENST00000474825 FGD5Q6ZNL6 1462 aa10.89□□□□□ -0.67
ATG4A-207ENST00000474825 MRC2Q9UBG0 1479 aa10.89□□□□□ -0.67
ATG4A-207ENST00000474825 POLA1P09884 1462 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms