RNA–Protein interactions for RNA: ENST00000473344.1

CKS1B-205, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 3

Gene CKS1B, Length 390 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-205ENST00000473344 AEBP2Q6ZN18 517 aaPredicted RBP20.18■□□□□ 0.82
CKS1B-205ENST00000473344 CHIC1Q5VXU3 224 aa19.17■□□□□ 0.66
CKS1B-205ENST00000473344 SENP3Q9H4L4 574 aaPredicted RBP17.43■□□□□ 0.38
CKS1B-205ENST00000473344 NISCHQ9Y2I1 1504 aa17.33■□□□□ 0.37
CKS1B-205ENST00000473344 PHF23Q9BUL5 403 aaPredicted RBP17.1■□□□□ 0.33
CKS1B-205ENST00000473344 FOXD1Q16676 465 aa16.14■□□□□ 0.17
CKS1B-205ENST00000473344 ABCC9O60706 1549 aa15.76■□□□□ 0.11
CKS1B-205ENST00000473344 CCDC180Q9P1Z9 1646 aa15.58■□□□□ 0.09
CKS1B-205ENST00000473344 PLPPR3Q6T4P5 718 aa15.32■□□□□ 0.04
CKS1B-205ENST00000473344 MSH5O43196 834 aa15.31■□□□□ 0.04
CKS1B-205ENST00000473344 PIAS4Q8N2W9 510 aaPredicted RBP15.08■□□□□ 0
CKS1B-205ENST00000473344 POTEDQ86YR6 584 aa15.03■□□□□ -0
CKS1B-205ENST00000473344 RB1CC1Q8TDY2 1594 aa14.94□□□□□ -0.02
CKS1B-205ENST00000473344 PPP6R1Q9UPN7 881 aa14.91□□□□□ -0.02
CKS1B-205ENST00000473344 ADRA2BP18089 450 aa14.87□□□□□ -0.03
CKS1B-205ENST00000473344 DNAJC5BQ9UF47 199 aa14.86□□□□□ -0.03
CKS1B-205ENST00000473344 DCAF8L2P0C7V8 631 aa14.8□□□□□ -0.04
CKS1B-205ENST00000473344 NACADO15069 1562 aa14.8□□□□□ -0.04
CKS1B-205ENST00000473344 PABPN1Q86U42 306 aaKnown RBP eCLIP14.68□□□□□ -0.06
CKS1B-205ENST00000473344 MYO15BQ96JP2 1530 aa14.53□□□□□ -0.08
CKS1B-205ENST00000473344 UNC13AQ9UPW8 1703 aa14.5□□□□□ -0.09
CKS1B-205ENST00000473344 BICRAQ9NZM4 1560 aa14.45□□□□□ -0.1
CKS1B-205ENST00000473344 ZCCHC6Q5VYS8 1495 aaKnown RBP14.33□□□□□ -0.12
CKS1B-205ENST00000473344 SHROOM4Q9ULL8 1493 aa14.3□□□□□ -0.12
CKS1B-205ENST00000473344 DCAF1Q9Y4B6 1507 aa14.3□□□□□ -0.12
CKS1B-205ENST00000473344 SCRIBQ14160 1630 aa14.23□□□□□ -0.13
CKS1B-205ENST00000473344 CECR2Q9BXF3 1484 aa14.22□□□□□ -0.13
CKS1B-205ENST00000473344 CC2D2AQ9P2K1 1620 aa14.2□□□□□ -0.14
CKS1B-205ENST00000473344 EIF4G1Q04637 1599 aaKnown RBP14.15□□□□□ -0.14
CKS1B-205ENST00000473344 SCAF1Q9H7N4 1312 aaKnown RBP13.87□□□□□ -0.19
CKS1B-205ENST00000473344 DNAJC5Q9H3Z4 198 aa13.78□□□□□ -0.2
CKS1B-205ENST00000473344 DMRT2Q9Y5R5 561 aa13.76□□□□□ -0.21
CKS1B-205ENST00000473344 MAPK8IP2Q13387 824 aaPredicted RBP13.67□□□□□ -0.22
CKS1B-205ENST00000473344 ERCC6Q03468 1493 aa13.67□□□□□ -0.22
CKS1B-205ENST00000473344 NCAPD3P42695 1498 aa13.66□□□□□ -0.22
CKS1B-205ENST00000473344 CUX2O14529 1486 aa13.63□□□□□ -0.23
CKS1B-205ENST00000473344 ATAD2BQ9ULI0 1458 aa13.6□□□□□ -0.23
CKS1B-205ENST00000473344 SMARCA2P51531 1590 aa13.57□□□□□ -0.24
CKS1B-205ENST00000473344 HMGXB3Q12766 1538 aa13.54□□□□□ -0.24
CKS1B-205ENST00000473344 SMARCA4P51532 1647 aa13.53□□□□□ -0.24
CKS1B-205ENST00000473344 BAZ1BQ9UIG0 1483 aaKnown RBP13.49□□□□□ -0.25
CKS1B-205ENST00000473344 BAZ1AQ9NRL2 1556 aaPredicted RBP13.49□□□□□ -0.25
CKS1B-205ENST00000473344 NESP48681 1621 aa13.48□□□□□ -0.25
CKS1B-205ENST00000473344 PEG3Q9GZU2 1588 aa13.4□□□□□ -0.26
CKS1B-205ENST00000473344 LAMC3Q9Y6N6 1575 aa13.38□□□□□ -0.27
CKS1B-205ENST00000473344 PDS5BQ9NTI5 1447 aa13.35□□□□□ -0.27
CKS1B-205ENST00000473344 MROH2BQ7Z745 1585 aa13.35□□□□□ -0.27
CKS1B-205ENST00000473344 THOC2Q8NI27 1593 aaKnown RBP13.34□□□□□ -0.27
CKS1B-205ENST00000473344 PPP4R3CPQ6ZMV5 832 aa13.34□□□□□ -0.27
CKS1B-205ENST00000473344 KIF21AQ7Z4S6 1674 aa13.28□□□□□ -0.28
CKS1B-205ENST00000473344 CADPSQ9ULU8 1353 aa13.26□□□□□ -0.29
CKS1B-205ENST00000473344 HOXD11P31277 338 aaPredicted RBP13.22□□□□□ -0.29
CKS1B-205ENST00000473344 MRC2Q9UBG0 1479 aa13.21□□□□□ -0.3
CKS1B-205ENST00000473344 TRIM41Q8WV44 630 aa13.18□□□□□ -0.3
CKS1B-205ENST00000473344 CNKSR2Q8WXI2 1034 aa13.18□□□□□ -0.3
CKS1B-205ENST00000473344 WIZO95785 1651 aa13.18□□□□□ -0.3
CKS1B-205ENST00000473344 WDR62O43379 1518 aa13.16□□□□□ -0.3
CKS1B-205ENST00000473344 CACNB1Q02641 598 aaPredicted RBP13.15□□□□□ -0.3
CKS1B-205ENST00000473344 CEP164Q9UPV0 1460 aa13.15□□□□□ -0.3
CKS1B-205ENST00000473344 DCAF8L1A6NGE4 600 aa13.14□□□□□ -0.31
CKS1B-205ENST00000473344 FANCD2Q9BXW9 1451 aa13.11□□□□□ -0.31
CKS1B-205ENST00000473344 RNF216Q9NWF9 866 aaPredicted RBP13.1□□□□□ -0.31
CKS1B-205ENST00000473344 CFTRP13569 1480 aa13.06□□□□□ -0.32
CKS1B-205ENST00000473344 RSF1Q96T23 1441 aaPredicted RBP13.04□□□□□ -0.32
CKS1B-205ENST00000473344 OSCARQ8IYS5 282 aa13.03□□□□□ -0.32
CKS1B-205ENST00000473344 TOP2AP11388 1531 aaKnown RBP13.02□□□□□ -0.33
CKS1B-205ENST00000473344 URB2Q14146 1524 aaKnown RBP12.98□□□□□ -0.33
CKS1B-205ENST00000473344 RNF39Q9H2S5 420 aa12.97□□□□□ -0.33
CKS1B-205ENST00000473344 NCBP3Q53F19 620 aaKnown RBP12.91□□□□□ -0.34
CKS1B-205ENST00000473344 CCDC88BA6NC98 1476 aa12.88□□□□□ -0.35
CKS1B-205ENST00000473344 IFT140Q96RY7 1462 aa12.88□□□□□ -0.35
CKS1B-205ENST00000473344 C1QBPQ07021 282 aaKnown RBP12.86□□□□□ -0.35
CKS1B-205ENST00000473344 PRDM2Q13029 1718 aa12.85□□□□□ -0.35
CKS1B-205ENST00000473344 ZNF608Q9ULD9 1512 aaPredicted RBP12.85□□□□□ -0.35
CKS1B-205ENST00000473344 ABCC8Q09428 1581 aa12.83□□□□□ -0.36
CKS1B-205ENST00000473344 TOPBP1Q92547 1522 aa12.83□□□□□ -0.36
CKS1B-205ENST00000473344 RIMBP3CA6NJZ7 1639 aa12.81□□□□□ -0.36
CKS1B-205ENST00000473344 RIMBP3BA6NNM3 1639 aa12.81□□□□□ -0.36
CKS1B-205ENST00000473344 RIMBP3Q9UFD9 1639 aa12.81□□□□□ -0.36
CKS1B-205ENST00000473344 ARHGEF11O15085 1522 aa12.78□□□□□ -0.36
CKS1B-205ENST00000473344 EIF4G3O43432 1585 aaKnown RBP12.77□□□□□ -0.36
CKS1B-205ENST00000473344 DNMBPQ6XZF7 1577 aa12.77□□□□□ -0.37
CKS1B-205ENST00000473344 FBLN2P98095 1184 aa12.75□□□□□ -0.37
CKS1B-205ENST00000473344 CYB5RLQ6IPT4 315 aa12.75□□□□□ -0.37
CKS1B-205ENST00000473344 AQRO60306 1485 aaKnown RBP eCLIP12.73□□□□□ -0.37
CKS1B-205ENST00000473344 POLA1P09884 1462 aaPredicted RBP12.7□□□□□ -0.38
CKS1B-205ENST00000473344 TARBP1Q13395 1621 aaKnown RBP12.7□□□□□ -0.38
CKS1B-205ENST00000473344 TRHP20396 242 aaPredicted RBP12.69□□□□□ -0.38
CKS1B-205ENST00000473344 CHD1O14646 1710 aa12.66□□□□□ -0.38
CKS1B-205ENST00000473344 SOGA1O94964 1423 aa12.66□□□□□ -0.38
CKS1B-205ENST00000473344 TDRD9Q8NDG6 1382 aaKnown RBP12.65□□□□□ -0.38
CKS1B-205ENST00000473344 RAD54L2Q9Y4B4 1467 aa12.65□□□□□ -0.38
CKS1B-205ENST00000473344 ARAP1Q96P48 1450 aa12.63□□□□□ -0.39
CKS1B-205ENST00000473344 CHMP7Q8WUX9 453 aaPredicted RBP12.62□□□□□ -0.39
CKS1B-205ENST00000473344 SNAPC4Q5SXM2 1469 aa12.6□□□□□ -0.39
CKS1B-205ENST00000473344 FGD5Q6ZNL6 1462 aa12.6□□□□□ -0.39
CKS1B-205ENST00000473344 WDR97A6NE52 1622 aa12.59□□□□□ -0.39
CKS1B-205ENST00000473344 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.58□□□□□ -0.4
CKS1B-205ENST00000473344 NPM3O75607 178 aaKnown RBP12.57□□□□□ -0.4
CKS1B-205ENST00000473344 MAGI1Q96QZ7 1491 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms