RNA–Protein interactions for RNA: ENST00000472928.5

HDAC1-205, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-205ENST00000472928 CHIC1Q5VXU3 224 aa17.44■□□□□ 0.38
HDAC1-205ENST00000472928 AEBP2Q6ZN18 517 aaPredicted RBP17.44■□□□□ 0.38
HDAC1-205ENST00000472928 NISCHQ9Y2I1 1504 aa15.84■□□□□ 0.13
HDAC1-205ENST00000472928 PHF23Q9BUL5 403 aaPredicted RBP15.39■□□□□ 0.05
HDAC1-205ENST00000472928 SENP3Q9H4L4 574 aaPredicted RBP14.71□□□□□ -0.05
HDAC1-205ENST00000472928 ABCC9O60706 1549 aa14.65□□□□□ -0.06
HDAC1-205ENST00000472928 PLPPR3Q6T4P5 718 aa14.32□□□□□ -0.12
HDAC1-205ENST00000472928 CCDC180Q9P1Z9 1646 aa14.3□□□□□ -0.12
HDAC1-205ENST00000472928 DNAJC5BQ9UF47 199 aa14.08□□□□□ -0.16
HDAC1-205ENST00000472928 RB1CC1Q8TDY2 1594 aa13.77□□□□□ -0.21
HDAC1-205ENST00000472928 NACADO15069 1562 aa13.62□□□□□ -0.23
HDAC1-205ENST00000472928 FOXD1Q16676 465 aa13.61□□□□□ -0.23
HDAC1-205ENST00000472928 PABPN1Q86U42 306 aaKnown RBP eCLIP13.6□□□□□ -0.23
HDAC1-205ENST00000472928 UNC13AQ9UPW8 1703 aa13.46□□□□□ -0.25
HDAC1-205ENST00000472928 ADRA2BP18089 450 aa13.44□□□□□ -0.26
HDAC1-205ENST00000472928 BICRAQ9NZM4 1560 aa13.44□□□□□ -0.26
HDAC1-205ENST00000472928 DCAF8L2P0C7V8 631 aa13.43□□□□□ -0.26
HDAC1-205ENST00000472928 PPP6R1Q9UPN7 881 aa13.43□□□□□ -0.26
HDAC1-205ENST00000472928 MYO15BQ96JP2 1530 aa13.35□□□□□ -0.27
HDAC1-205ENST00000472928 CECR2Q9BXF3 1484 aa13.23□□□□□ -0.29
HDAC1-205ENST00000472928 CC2D2AQ9P2K1 1620 aa13.21□□□□□ -0.3
HDAC1-205ENST00000472928 SHROOM4Q9ULL8 1493 aa13.2□□□□□ -0.3
HDAC1-205ENST00000472928 DNAJC5Q9H3Z4 198 aa13.12□□□□□ -0.31
HDAC1-205ENST00000472928 EIF4G1Q04637 1599 aaKnown RBP13.11□□□□□ -0.31
HDAC1-205ENST00000472928 ZCCHC6Q5VYS8 1495 aaKnown RBP13.07□□□□□ -0.32
HDAC1-205ENST00000472928 DCAF1Q9Y4B6 1507 aa13.06□□□□□ -0.32
HDAC1-205ENST00000472928 SCRIBQ14160 1630 aa13.03□□□□□ -0.32
HDAC1-205ENST00000472928 PIAS4Q8N2W9 510 aaPredicted RBP12.92□□□□□ -0.34
HDAC1-205ENST00000472928 KCNA4P22459 653 aa12.89□□□□□ -0.35
HDAC1-205ENST00000472928 CUX2O14529 1486 aa12.75□□□□□ -0.37
HDAC1-205ENST00000472928 PPP4R3CPQ6ZMV5 832 aa12.68□□□□□ -0.38
HDAC1-205ENST00000472928 ERCC6Q03468 1493 aa12.64□□□□□ -0.39
HDAC1-205ENST00000472928 NCAPD3P42695 1498 aa12.6□□□□□ -0.39
HDAC1-205ENST00000472928 ATAD2BQ9ULI0 1458 aa12.53□□□□□ -0.4
HDAC1-205ENST00000472928 NESP48681 1621 aa12.51□□□□□ -0.41
HDAC1-205ENST00000472928 HMGXB3Q12766 1538 aa12.47□□□□□ -0.41
HDAC1-205ENST00000472928 EHMT2Q96KQ7 1210 aa12.46□□□□□ -0.41
HDAC1-205ENST00000472928 NCBP3Q53F19 620 aaKnown RBP12.45□□□□□ -0.42
HDAC1-205ENST00000472928 SMARCA2P51531 1590 aa12.43□□□□□ -0.42
HDAC1-205ENST00000472928 THOC2Q8NI27 1593 aaKnown RBP12.43□□□□□ -0.42
HDAC1-205ENST00000472928 SMARCA4P51532 1647 aa12.4□□□□□ -0.42
HDAC1-205ENST00000472928 TRIM41Q8WV44 630 aa12.38□□□□□ -0.43
HDAC1-205ENST00000472928 MSH5O43196 834 aa12.36□□□□□ -0.43
HDAC1-205ENST00000472928 BAZ1BQ9UIG0 1483 aaKnown RBP12.35□□□□□ -0.43
HDAC1-205ENST00000472928 SLC4A1APQ9BWU0 796 aaKnown RBP12.33□□□□□ -0.44
HDAC1-205ENST00000472928 LAMC3Q9Y6N6 1575 aa12.33□□□□□ -0.44
HDAC1-205ENST00000472928 PEG3Q9GZU2 1588 aa12.3□□□□□ -0.44
HDAC1-205ENST00000472928 NPM3O75607 178 aaKnown RBP12.3□□□□□ -0.44
HDAC1-205ENST00000472928 KIF21AQ7Z4S6 1674 aa12.29□□□□□ -0.44
HDAC1-205ENST00000472928 BAZ1AQ9NRL2 1556 aaPredicted RBP12.29□□□□□ -0.44
HDAC1-205ENST00000472928 PDS5BQ9NTI5 1447 aa12.28□□□□□ -0.44
HDAC1-205ENST00000472928 SCAF1Q9H7N4 1312 aaKnown RBP12.25□□□□□ -0.45
HDAC1-205ENST00000472928 CNKSR2Q8WXI2 1034 aa12.22□□□□□ -0.45
HDAC1-205ENST00000472928 MRC2Q9UBG0 1479 aa12.21□□□□□ -0.45
HDAC1-205ENST00000472928 MROH2BQ7Z745 1585 aa12.21□□□□□ -0.46
HDAC1-205ENST00000472928 CADPSQ9ULU8 1353 aa12.2□□□□□ -0.46
HDAC1-205ENST00000472928 WDR62O43379 1518 aa12.2□□□□□ -0.46
HDAC1-205ENST00000472928 CSRNP3Q8WYN3 585 aa12.14□□□□□ -0.47
HDAC1-205ENST00000472928 OSCARQ8IYS5 282 aa12.1□□□□□ -0.47
HDAC1-205ENST00000472928 CEP164Q9UPV0 1460 aa12.08□□□□□ -0.48
HDAC1-205ENST00000472928 MAPK8IP2Q13387 824 aaPredicted RBP12.06□□□□□ -0.48
HDAC1-205ENST00000472928 FANCD2Q9BXW9 1451 aa12.06□□□□□ -0.48
HDAC1-205ENST00000472928 WIZO95785 1651 aa12.01□□□□□ -0.49
HDAC1-205ENST00000472928 CFTRP13569 1480 aa12□□□□□ -0.49
HDAC1-205ENST00000472928 URB2Q14146 1524 aaKnown RBP12□□□□□ -0.49
HDAC1-205ENST00000472928 RIMBP3CA6NJZ7 1639 aa11.99□□□□□ -0.49
HDAC1-205ENST00000472928 RIMBP3BA6NNM3 1639 aa11.99□□□□□ -0.49
HDAC1-205ENST00000472928 RIMBP3Q9UFD9 1639 aa11.99□□□□□ -0.49
HDAC1-205ENST00000472928 ARHGEF11O15085 1522 aa11.93□□□□□ -0.5
HDAC1-205ENST00000472928 ZNF608Q9ULD9 1512 aaPredicted RBP11.91□□□□□ -0.5
HDAC1-205ENST00000472928 ZBTB22O15209 634 aa11.89□□□□□ -0.51
HDAC1-205ENST00000472928 RNF216Q9NWF9 866 aaPredicted RBP11.89□□□□□ -0.51
HDAC1-205ENST00000472928 IFT140Q96RY7 1462 aa11.87□□□□□ -0.51
HDAC1-205ENST00000472928 TOP2AP11388 1531 aaKnown RBP11.86□□□□□ -0.51
HDAC1-205ENST00000472928 RSF1Q96T23 1441 aaPredicted RBP11.85□□□□□ -0.51
HDAC1-205ENST00000472928 CYB5RLQ6IPT4 315 aa11.84□□□□□ -0.51
HDAC1-205ENST00000472928 DMRT2Q9Y5R5 561 aa11.82□□□□□ -0.52
HDAC1-205ENST00000472928 ARAP1Q96P48 1450 aa11.81□□□□□ -0.52
HDAC1-205ENST00000472928 TOPBP1Q92547 1522 aa11.8□□□□□ -0.52
HDAC1-205ENST00000472928 EIF4G3O43432 1585 aaKnown RBP11.79□□□□□ -0.52
HDAC1-205ENST00000472928 PRDM2Q13029 1718 aa11.77□□□□□ -0.52
HDAC1-205ENST00000472928 TRHP20396 242 aaPredicted RBP11.77□□□□□ -0.53
HDAC1-205ENST00000472928 HOXD11P31277 338 aaPredicted RBP11.75□□□□□ -0.53
HDAC1-205ENST00000472928 AQRO60306 1485 aaKnown RBP eCLIP11.74□□□□□ -0.531e-11■■■■■ 33.4
HDAC1-205ENST00000472928 CHD1O14646 1710 aa11.74□□□□□ -0.53
HDAC1-205ENST00000472928 CCDC88BA6NC98 1476 aa11.73□□□□□ -0.53
HDAC1-205ENST00000472928 FOXD4L1Q9NU39 408 aa11.73□□□□□ -0.53
HDAC1-205ENST00000472928 TARBP1Q13395 1621 aaKnown RBP11.71□□□□□ -0.53
HDAC1-205ENST00000472928 DNMBPQ6XZF7 1577 aa11.71□□□□□ -0.53
HDAC1-205ENST00000472928 ABCC8Q09428 1581 aa11.71□□□□□ -0.54
HDAC1-205ENST00000472928 FBLN2P98095 1184 aa11.67□□□□□ -0.54
HDAC1-205ENST00000472928 POLA1P09884 1462 aaPredicted RBP11.66□□□□□ -0.54
HDAC1-205ENST00000472928 CLASP1Q7Z460 1538 aa11.65□□□□□ -0.55
HDAC1-205ENST00000472928 RAD54L2Q9Y4B4 1467 aa11.63□□□□□ -0.55
HDAC1-205ENST00000472928 TDRD9Q8NDG6 1382 aaKnown RBP11.62□□□□□ -0.55
HDAC1-205ENST00000472928 SNAPC4Q5SXM2 1469 aa11.61□□□□□ -0.55
HDAC1-205ENST00000472928 SOGA1O94964 1423 aa11.58□□□□□ -0.56
HDAC1-205ENST00000472928 SYNJ1O43426 1573 aa11.56□□□□□ -0.56
HDAC1-205ENST00000472928 CHMP7Q8WUX9 453 aaPredicted RBP11.55□□□□□ -0.56
HDAC1-205ENST00000472928 MAGI1Q96QZ7 1491 aaPredicted RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms