RNA–Protein interactions for RNA: ENST00000470432.5

ECM1-204, Transcript of extracellular matrix protein 1, humanhuman

TSL 2

Gene ECM1, Length 3,066 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECM1-204ENST00000470432 NISCHQ9Y2I1 1504 aa24.22■■□□□ 1.47
ECM1-204ENST00000470432 CCDC180Q9P1Z9 1646 aa21.47■■□□□ 1.03
ECM1-204ENST00000470432 SHROOM4Q9ULL8 1493 aa20.8■□□□□ 0.92
ECM1-204ENST00000470432 SUPT5HO00267 1087 aaKnown RBP20.58■□□□□ 0.88
ECM1-204ENST00000470432 ZCCHC6Q5VYS8 1495 aaKnown RBP20.55■□□□□ 0.88
ECM1-204ENST00000470432 ABCC9O60706 1549 aa20.4■□□□□ 0.86
ECM1-204ENST00000470432 CHIC1Q5VXU3 224 aa20.22■□□□□ 0.83
ECM1-204ENST00000470432 MYO15BQ96JP2 1530 aa20.2■□□□□ 0.82
ECM1-204ENST00000470432 HRCP23327 699 aa20.18■□□□□ 0.82
ECM1-204ENST00000470432 DCAF1Q9Y4B6 1507 aa20.08■□□□□ 0.81
ECM1-204ENST00000470432 NACADO15069 1562 aa20.07■□□□□ 0.8
ECM1-204ENST00000470432 RB1CC1Q8TDY2 1594 aa20.01■□□□□ 0.79
ECM1-204ENST00000470432 PCGF6Q9BYE7 350 aa19.91■□□□□ 0.78
ECM1-204ENST00000470432 DCAF8L2P0C7V8 631 aa19.9■□□□□ 0.78
ECM1-204ENST00000470432 PPARGC1BQ86YN6 1023 aaKnown RBP19.63■□□□□ 0.73
ECM1-204ENST00000470432 LOC105371045A0A1W2PR82 267 aa19.6■□□□□ 0.73
ECM1-204ENST00000470432 TRIM26Q12899 539 aaPredicted RBP19.5■□□□□ 0.71
ECM1-204ENST00000470432 UNC13AQ9UPW8 1703 aa19.49■□□□□ 0.71
ECM1-204ENST00000470432 BICRAQ9NZM4 1560 aa19.29■□□□□ 0.68
ECM1-204ENST00000470432 RSF1Q96T23 1441 aaPredicted RBP19.28■□□□□ 0.68
ECM1-204ENST00000470432 SCRIBQ14160 1630 aa19.28■□□□□ 0.68
ECM1-204ENST00000470432 ZEB1P37275 1124 aaPredicted RBP19.26■□□□□ 0.67
ECM1-204ENST00000470432 TRIM41Q8WV44 630 aa19.18■□□□□ 0.66
ECM1-204ENST00000470432 FAM9AQ8IZU1 332 aaPredicted RBP18.98■□□□□ 0.63
ECM1-204ENST00000470432 PABPN1Q86U42 306 aaKnown RBP eCLIP18.95■□□□□ 0.62
ECM1-204ENST00000470432 PELP1Q8IZL8 1130 aaKnown RBP18.89■□□□□ 0.61
ECM1-204ENST00000470432 CECR2Q9BXF3 1484 aa18.83■□□□□ 0.61
ECM1-204ENST00000470432 MROH2BQ7Z745 1585 aa18.82■□□□□ 0.6
ECM1-204ENST00000470432 SCAF1Q9H7N4 1312 aaKnown RBP18.78■□□□□ 0.6
ECM1-204ENST00000470432 EIF4G1Q04637 1599 aaKnown RBP18.77■□□□□ 0.6
ECM1-204ENST00000470432 EHMT2Q96KQ7 1210 aa18.76■□□□□ 0.59
ECM1-204ENST00000470432 WIZO95785 1651 aa18.74■□□□□ 0.59
ECM1-204ENST00000470432 BAZ1AQ9NRL2 1556 aaPredicted RBP18.68■□□□□ 0.58
ECM1-204ENST00000470432 CC2D2AQ9P2K1 1620 aa18.62■□□□□ 0.57
ECM1-204ENST00000470432 SMARCA4P51532 1647 aa18.6■□□□□ 0.57
ECM1-204ENST00000470432 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.6■□□□□ 0.57
ECM1-204ENST00000470432 CCER1Q8TC90 406 aaPredicted RBP18.6■□□□□ 0.57
ECM1-204ENST00000470432 PEG3Q9GZU2 1588 aa18.55■□□□□ 0.56
ECM1-204ENST00000470432 WRNQ14191 1432 aaPredicted RBP eCLIP18.54■□□□□ 0.56
ECM1-204ENST00000470432 ACIN1Q9UKV3 1341 aaKnown RBP18.52■□□□□ 0.56
ECM1-204ENST00000470432 SMARCA2P51531 1590 aa18.51■□□□□ 0.55
ECM1-204ENST00000470432 TOP2AP11388 1531 aaKnown RBP18.47■□□□□ 0.55
ECM1-204ENST00000470432 HMGXB3Q12766 1538 aa18.45■□□□□ 0.54
ECM1-204ENST00000470432 NCAPD3P42695 1498 aa18.44■□□□□ 0.54
ECM1-204ENST00000470432 DIEXFQ68CQ4 756 aaKnown RBP18.43■□□□□ 0.54
ECM1-204ENST00000470432 CCDC88BA6NC98 1476 aa18.43■□□□□ 0.54
ECM1-204ENST00000470432 NEUROD1Q13562 356 aa18.43■□□□□ 0.54
ECM1-204ENST00000470432 ABCC8Q09428 1581 aa18.42■□□□□ 0.54
ECM1-204ENST00000470432 DNAJC5BQ9UF47 199 aa18.42■□□□□ 0.54
ECM1-204ENST00000470432 CEP162Q5TB80 1403 aa18.42■□□□□ 0.54
ECM1-204ENST00000470432 ATAD2BQ9ULI0 1458 aa18.4■□□□□ 0.54
ECM1-204ENST00000470432 TNIKQ9UKE5 1360 aa18.39■□□□□ 0.54
ECM1-204ENST00000470432 CENPBP07199 599 aaPredicted RBP18.38■□□□□ 0.53
ECM1-204ENST00000470432 EEA1Q15075 1411 aa18.35■□□□□ 0.53
ECM1-204ENST00000470432 SOGA1O94964 1423 aa18.33■□□□□ 0.52
ECM1-204ENST00000470432 GTF3C3Q9Y5Q9 886 aa18.29■□□□□ 0.52
ECM1-204ENST00000470432 CSRNP3Q8WYN3 585 aa18.28■□□□□ 0.52
ECM1-204ENST00000470432 TTBK1Q5TCY1 1321 aaPredicted RBP18.26■□□□□ 0.51
ECM1-204ENST00000470432 BAZ1BQ9UIG0 1483 aaKnown RBP18.25■□□□□ 0.51
ECM1-204ENST00000470432 ZNF316A6NFI3 1004 aaPredicted RBP18.23■□□□□ 0.51
ECM1-204ENST00000470432 GOLGA3Q08378 1498 aa18.21■□□□□ 0.51
ECM1-204ENST00000470432 UBTFP17480 764 aaKnown RBP18.21■□□□□ 0.51
ECM1-204ENST00000470432 RUSC2Q8N2Y8 1516 aa18.21■□□□□ 0.51
ECM1-204ENST00000470432 CEP164Q9UPV0 1460 aa18.08■□□□□ 0.49
ECM1-204ENST00000470432 KIF21BO75037 1637 aa18.08■□□□□ 0.48
ECM1-204ENST00000470432 MYT1Q01538 1121 aa18.06■□□□□ 0.48
ECM1-204ENST00000470432 CLIP1P30622 1438 aa18.01■□□□□ 0.47
ECM1-204ENST00000470432 SYNJ1O43426 1573 aa17.99■□□□□ 0.47
ECM1-204ENST00000470432 VPS8Q8N3P4 1428 aa17.99■□□□□ 0.47
ECM1-204ENST00000470432 HNRNPUL2Q1KMD3 747 aaKnown RBP17.99■□□□□ 0.47
ECM1-204ENST00000470432 LAMC3Q9Y6N6 1575 aa17.98■□□□□ 0.47
ECM1-204ENST00000470432 MIER1Q8N108 512 aa17.97■□□□□ 0.47
ECM1-204ENST00000470432 YTHDC1Q96MU7 727 aaKnown RBP17.95■□□□□ 0.46
ECM1-204ENST00000470432 APLP2Q06481 763 aa17.91■□□□□ 0.46
ECM1-204ENST00000470432 PRDM2Q13029 1718 aa17.88■□□□□ 0.45
ECM1-204ENST00000470432 RAPGEF2Q9Y4G8 1499 aa17.87■□□□□ 0.45
ECM1-204ENST00000470432 CLSPNQ9HAW4 1339 aa17.84■□□□□ 0.45
ECM1-204ENST00000470432 CADPSQ9ULU8 1353 aa17.83■□□□□ 0.45
ECM1-204ENST00000470432 CFTRP13569 1480 aa17.81■□□□□ 0.44
ECM1-204ENST00000470432 PDS5BQ9NTI5 1447 aa17.77■□□□□ 0.44
ECM1-204ENST00000470432 TOP2BQ02880 1626 aa17.77■□□□□ 0.44
ECM1-204ENST00000470432 DHX57Q6P158 1386 aaKnown RBP17.74■□□□□ 0.43
ECM1-204ENST00000470432 ERICH3Q5RHP9 1530 aa17.74■□□□□ 0.43
ECM1-204ENST00000470432 BIVM-ERCC5R4GMW8 1640 aa17.7■□□□□ 0.42
ECM1-204ENST00000470432 NESP48681 1621 aa17.69■□□□□ 0.42
ECM1-204ENST00000470432 RANGAP1P46060 587 aaPredicted RBP17.69■□□□□ 0.42
ECM1-204ENST00000470432 PRXQ9BXM0 1461 aa17.69■□□□□ 0.42
ECM1-204ENST00000470432 ARAP1Q96P48 1450 aa17.68■□□□□ 0.42
ECM1-204ENST00000470432 KIF21AQ7Z4S6 1674 aa17.66■□□□□ 0.42
ECM1-204ENST00000470432 ERCC6Q03468 1493 aa17.66■□□□□ 0.42
ECM1-204ENST00000470432 RRBP1Q9P2E9 1410 aaKnown RBP17.64■□□□□ 0.41
ECM1-204ENST00000470432 THOC2Q8NI27 1593 aaKnown RBP17.62■□□□□ 0.41
ECM1-204ENST00000470432 CUX2O14529 1486 aa17.61■□□□□ 0.41
ECM1-204ENST00000470432 KANK4Q5T7N3 995 aaPredicted RBP17.61■□□□□ 0.41
ECM1-204ENST00000470432 FANCD2Q9BXW9 1451 aa17.61■□□□□ 0.41
ECM1-204ENST00000470432 MRC2Q9UBG0 1479 aa17.58■□□□□ 0.4
ECM1-204ENST00000470432 WDR62O43379 1518 aa17.56■□□□□ 0.4
ECM1-204ENST00000470432 SUPT16HQ9Y5B9 1047 aaKnown RBP17.56■□□□□ 0.4
ECM1-204ENST00000470432 KIF27Q86VH2 1401 aa17.53■□□□□ 0.4
ECM1-204ENST00000470432 CCNB3Q8WWL7 1395 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms