RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 AEBP2Q6ZN18 517 aaPredicted RBP21.56■■□□□ 1.04
NPHP3-204ENST00000469232 CHIC1Q5VXU3 224 aa20.73■□□□□ 0.91
NPHP3-204ENST00000469232 NISCHQ9Y2I1 1504 aa19.25■□□□□ 0.67
NPHP3-204ENST00000469232 SENP3Q9H4L4 574 aaPredicted RBP18.33■□□□□ 0.52
NPHP3-204ENST00000469232 PHF23Q9BUL5 403 aaPredicted RBP18.2■□□□□ 0.5
NPHP3-204ENST00000469232 FOXD1Q16676 465 aa17.07■□□□□ 0.32
NPHP3-204ENST00000469232 CCDC180Q9P1Z9 1646 aa16.95■□□□□ 0.3
NPHP3-204ENST00000469232 PLPPR3Q6T4P5 718 aa16.68■□□□□ 0.26
NPHP3-204ENST00000469232 PPP6R1Q9UPN7 881 aa16.17■□□□□ 0.18
NPHP3-204ENST00000469232 ZCCHC6Q5VYS8 1495 aaKnown RBP16.14■□□□□ 0.17
NPHP3-204ENST00000469232 ADRA2BP18089 450 aa16.13■□□□□ 0.17
NPHP3-204ENST00000469232 ABCC9O60706 1549 aa16.06■□□□□ 0.16
NPHP3-204ENST00000469232 DCAF1Q9Y4B6 1507 aa16.03■□□□□ 0.16
NPHP3-204ENST00000469232 PIAS4Q8N2W9 510 aaPredicted RBP16.01■□□□□ 0.15
NPHP3-204ENST00000469232 MYO15BQ96JP2 1530 aa15.97■□□□□ 0.15
NPHP3-204ENST00000469232 MSH5O43196 834 aa15.84■□□□□ 0.13
NPHP3-204ENST00000469232 NACADO15069 1562 aa15.83■□□□□ 0.12
NPHP3-204ENST00000469232 RB1CC1Q8TDY2 1594 aa15.7■□□□□ 0.1
NPHP3-204ENST00000469232 DCAF8L2P0C7V8 631 aa15.67■□□□□ 0.1
NPHP3-204ENST00000469232 SCRIBQ14160 1630 aa15.38■□□□□ 0.05
NPHP3-204ENST00000469232 UNC13AQ9UPW8 1703 aa15.35■□□□□ 0.05
NPHP3-204ENST00000469232 BICRAQ9NZM4 1560 aa15.27■□□□□ 0.03
NPHP3-204ENST00000469232 SHROOM4Q9ULL8 1493 aa15.26■□□□□ 0.03
NPHP3-204ENST00000469232 PABPN1Q86U42 306 aaKnown RBP eCLIP15.04■□□□□ -0
NPHP3-204ENST00000469232 POTEDQ86YR6 584 aa15.02□□□□□ -0.01
NPHP3-204ENST00000469232 CECR2Q9BXF3 1484 aa14.91□□□□□ -0.02
NPHP3-204ENST00000469232 BAZ1AQ9NRL2 1556 aaPredicted RBP14.88□□□□□ -0.03
NPHP3-204ENST00000469232 SMARCA4P51532 1647 aa14.83□□□□□ -0.04
NPHP3-204ENST00000469232 RSF1Q96T23 1441 aaPredicted RBP14.82□□□□□ -0.04
NPHP3-204ENST00000469232 MROH2BQ7Z745 1585 aa14.82□□□□□ -0.04
NPHP3-204ENST00000469232 EIF4G1Q04637 1599 aaKnown RBP14.78□□□□□ -0.04
NPHP3-204ENST00000469232 PEG3Q9GZU2 1588 aa14.76□□□□□ -0.05
NPHP3-204ENST00000469232 MAPK8IP2Q13387 824 aaPredicted RBP14.74□□□□□ -0.05
NPHP3-204ENST00000469232 SCAF1Q9H7N4 1312 aaKnown RBP14.73□□□□□ -0.05
NPHP3-204ENST00000469232 PPP4R3CPQ6ZMV5 832 aa14.66□□□□□ -0.06
NPHP3-204ENST00000469232 ATAD2BQ9ULI0 1458 aa14.66□□□□□ -0.06
NPHP3-204ENST00000469232 SMARCA2P51531 1590 aa14.65□□□□□ -0.06
NPHP3-204ENST00000469232 WIZO95785 1651 aa14.63□□□□□ -0.07
NPHP3-204ENST00000469232 NCAPD3P42695 1498 aa14.63□□□□□ -0.07
NPHP3-204ENST00000469232 CC2D2AQ9P2K1 1620 aa14.59□□□□□ -0.07
NPHP3-204ENST00000469232 DMRT2Q9Y5R5 561 aa14.59□□□□□ -0.07
NPHP3-204ENST00000469232 HMGXB3Q12766 1538 aa14.58□□□□□ -0.07
NPHP3-204ENST00000469232 TOP2AP11388 1531 aaKnown RBP14.56□□□□□ -0.08
NPHP3-204ENST00000469232 SUPT5HO00267 1087 aaKnown RBP14.56□□□□□ -0.08
NPHP3-204ENST00000469232 BAZ1BQ9UIG0 1483 aaKnown RBP14.51□□□□□ -0.09
NPHP3-204ENST00000469232 DNAJC5BQ9UF47 199 aa14.42□□□□□ -0.1
NPHP3-204ENST00000469232 CCDC88BA6NC98 1476 aa14.37□□□□□ -0.11
NPHP3-204ENST00000469232 CNKSR2Q8WXI2 1034 aa14.32□□□□□ -0.12
NPHP3-204ENST00000469232 CFTRP13569 1480 aa14.21□□□□□ -0.13
NPHP3-204ENST00000469232 CADPSQ9ULU8 1353 aa14.17□□□□□ -0.14
NPHP3-204ENST00000469232 NCBP3Q53F19 620 aaKnown RBP14.17□□□□□ -0.14
NPHP3-204ENST00000469232 HOXD11P31277 338 aaPredicted RBP14.15□□□□□ -0.14
NPHP3-204ENST00000469232 LAMC3Q9Y6N6 1575 aa14.13□□□□□ -0.15
NPHP3-204ENST00000469232 RNF216Q9NWF9 866 aaPredicted RBP14.12□□□□□ -0.15
NPHP3-204ENST00000469232 PRDM2Q13029 1718 aa14.1□□□□□ -0.15
NPHP3-204ENST00000469232 NESP48681 1621 aa14.04□□□□□ -0.16
NPHP3-204ENST00000469232 PDS5BQ9NTI5 1447 aa13.99□□□□□ -0.17
NPHP3-204ENST00000469232 NPM3O75607 178 aaKnown RBP13.98□□□□□ -0.17
NPHP3-204ENST00000469232 FANCD2Q9BXW9 1451 aa13.98□□□□□ -0.17
NPHP3-204ENST00000469232 KCNA4P22459 653 aa13.97□□□□□ -0.17
NPHP3-204ENST00000469232 DCAF8L1A6NGE4 600 aa13.96□□□□□ -0.17
NPHP3-204ENST00000469232 CEP164Q9UPV0 1460 aa13.92□□□□□ -0.18
NPHP3-204ENST00000469232 WRNQ14191 1432 aaPredicted RBP eCLIP13.91□□□□□ -0.18
NPHP3-204ENST00000469232 ABCC8Q09428 1581 aa13.91□□□□□ -0.18
NPHP3-204ENST00000469232 KIF21AQ7Z4S6 1674 aa13.89□□□□□ -0.19
NPHP3-204ENST00000469232 BIVM-ERCC5R4GMW8 1640 aa13.88□□□□□ -0.19
NPHP3-204ENST00000469232 CUX1P39880 1505 aa13.88□□□□□ -0.19
NPHP3-204ENST00000469232 TOP2BQ02880 1626 aa13.88□□□□□ -0.19
NPHP3-204ENST00000469232 SYNJ1O43426 1573 aa13.87□□□□□ -0.19
NPHP3-204ENST00000469232 DNMBPQ6XZF7 1577 aa13.85□□□□□ -0.19
NPHP3-204ENST00000469232 URB2Q14146 1524 aaKnown RBP13.84□□□□□ -0.19
NPHP3-204ENST00000469232 MRC2Q9UBG0 1479 aa13.83□□□□□ -0.2
NPHP3-204ENST00000469232 TOPBP1Q92547 1522 aa13.82□□□□□ -0.2
NPHP3-204ENST00000469232 WDR62O43379 1518 aa13.81□□□□□ -0.2
NPHP3-204ENST00000469232 THOC2Q8NI27 1593 aaKnown RBP13.8□□□□□ -0.2
NPHP3-204ENST00000469232 TRIM41Q8WV44 630 aa13.79□□□□□ -0.2
NPHP3-204ENST00000469232 ERCC6Q03468 1493 aa13.77□□□□□ -0.2
NPHP3-204ENST00000469232 POLA1P09884 1462 aaPredicted RBP13.73□□□□□ -0.21
NPHP3-204ENST00000469232 FGD5Q6ZNL6 1462 aa13.73□□□□□ -0.21
NPHP3-204ENST00000469232 CUX2O14529 1486 aa13.69□□□□□ -0.22
NPHP3-204ENST00000469232 ABCA10Q8WWZ4 1543 aa13.68□□□□□ -0.22
NPHP3-204ENST00000469232 TARBP1Q13395 1621 aaKnown RBP13.67□□□□□ -0.22
NPHP3-204ENST00000469232 WDR97A6NE52 1622 aa13.66□□□□□ -0.22
NPHP3-204ENST00000469232 SOGA1O94964 1423 aa13.65□□□□□ -0.22
NPHP3-204ENST00000469232 EEA1Q15075 1411 aa13.65□□□□□ -0.22
NPHP3-204ENST00000469232 IFT140Q96RY7 1462 aa13.64□□□□□ -0.23
NPHP3-204ENST00000469232 RAD54L2Q9Y4B4 1467 aa13.63□□□□□ -0.23
NPHP3-204ENST00000469232 KIF27Q86VH2 1401 aa13.59□□□□□ -0.23
NPHP3-204ENST00000469232 RUSC2Q8N2Y8 1516 aa13.59□□□□□ -0.23
NPHP3-204ENST00000469232 ABCA5Q8WWZ7 1642 aa13.58□□□□□ -0.24
NPHP3-204ENST00000469232 RNF39Q9H2S5 420 aa13.56□□□□□ -0.24
NPHP3-204ENST00000469232 IGF1RP08069 1367 aa13.53□□□□□ -0.24
NPHP3-204ENST00000469232 ERICH3Q5RHP9 1530 aa13.51□□□□□ -0.25
NPHP3-204ENST00000469232 CSRNP3Q8WYN3 585 aa13.51□□□□□ -0.25
NPHP3-204ENST00000469232 GAPVD1Q14C86 1478 aa13.51□□□□□ -0.25
NPHP3-204ENST00000469232 ZNF608Q9ULD9 1512 aaPredicted RBP13.51□□□□□ -0.25
NPHP3-204ENST00000469232 PRXQ9BXM0 1461 aa13.5□□□□□ -0.25
NPHP3-204ENST00000469232 TDRD9Q8NDG6 1382 aaKnown RBP13.5□□□□□ -0.25
NPHP3-204ENST00000469232 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.48□□□□□ -0.252e-6■■□□□ 12
NPHP3-204ENST00000469232 EIF4G3O43432 1585 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms