RNA–Protein interactions for RNA: ENST00000467171.2

APOBEC1-202, Transcript of apolipoprotein B mRNA editing enzyme catalytic subunit 1, humanhuman

TSL 1 (best)

Gene APOBEC1, Length 861 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOBEC1-202ENST00000467171 AEBP2Q6ZN18 517 aaPredicted RBP26.34■■□□□ 1.81
APOBEC1-202ENST00000467171 CHIC1Q5VXU3 224 aa25.11■■□□□ 1.61
APOBEC1-202ENST00000467171 SENP3Q9H4L4 574 aaPredicted RBP22.54■■□□□ 1.2
APOBEC1-202ENST00000467171 PHF23Q9BUL5 403 aaPredicted RBP22.21■■□□□ 1.15
APOBEC1-202ENST00000467171 NISCHQ9Y2I1 1504 aa21.39■■□□□ 1.01
APOBEC1-202ENST00000467171 FOXD1Q16676 465 aa20.94■□□□□ 0.94
APOBEC1-202ENST00000467171 PLPPR3Q6T4P5 718 aa20.11■□□□□ 0.81
APOBEC1-202ENST00000467171 MSH5O43196 834 aa19.66■□□□□ 0.74
APOBEC1-202ENST00000467171 PIAS4Q8N2W9 510 aaPredicted RBP19.61■□□□□ 0.73
APOBEC1-202ENST00000467171 PPP6R1Q9UPN7 881 aa19.59■□□□□ 0.73
APOBEC1-202ENST00000467171 ADRA2BP18089 450 aa19.54■□□□□ 0.72
APOBEC1-202ENST00000467171 POTEDQ86YR6 584 aa19.05■□□□□ 0.64
APOBEC1-202ENST00000467171 CCDC180Q9P1Z9 1646 aa18.53■□□□□ 0.56
APOBEC1-202ENST00000467171 ZCCHC6Q5VYS8 1495 aaKnown RBP17.99■□□□□ 0.47
APOBEC1-202ENST00000467171 SCAF1Q9H7N4 1312 aaKnown RBP17.97■□□□□ 0.47
APOBEC1-202ENST00000467171 MAPK8IP2Q13387 824 aaPredicted RBP17.92■□□□□ 0.46
APOBEC1-202ENST00000467171 DMRT2Q9Y5R5 561 aa17.86■□□□□ 0.45
APOBEC1-202ENST00000467171 DCAF1Q9Y4B6 1507 aa17.76■□□□□ 0.43
APOBEC1-202ENST00000467171 PPP4R3CPQ6ZMV5 832 aa17.6■□□□□ 0.41
APOBEC1-202ENST00000467171 MYO15BQ96JP2 1530 aa17.54■□□□□ 0.4
APOBEC1-202ENST00000467171 DCAF8L2P0C7V8 631 aa17.54■□□□□ 0.4
APOBEC1-202ENST00000467171 ABCC9O60706 1549 aa17.44■□□□□ 0.38
APOBEC1-202ENST00000467171 SHROOM4Q9ULL8 1493 aa17.39■□□□□ 0.37
APOBEC1-202ENST00000467171 NACADO15069 1562 aa17.32■□□□□ 0.36
APOBEC1-202ENST00000467171 CNKSR2Q8WXI2 1034 aa17.29■□□□□ 0.36
APOBEC1-202ENST00000467171 HOXD11P31277 338 aaPredicted RBP17.23■□□□□ 0.35
APOBEC1-202ENST00000467171 RNF216Q9NWF9 866 aaPredicted RBP17.12■□□□□ 0.33
APOBEC1-202ENST00000467171 DCAF8L1A6NGE4 600 aa17.11■□□□□ 0.33
APOBEC1-202ENST00000467171 RB1CC1Q8TDY2 1594 aa17.11■□□□□ 0.33
APOBEC1-202ENST00000467171 SCRIBQ14160 1630 aa16.99■□□□□ 0.31
APOBEC1-202ENST00000467171 NCBP3Q53F19 620 aaKnown RBP16.99■□□□□ 0.31
APOBEC1-202ENST00000467171 SUPT5HO00267 1087 aaKnown RBP16.82■□□□□ 0.28
APOBEC1-202ENST00000467171 CACNB1Q02641 598 aaPredicted RBP16.8■□□□□ 0.28
APOBEC1-202ENST00000467171 RNF39Q9H2S5 420 aa16.74■□□□□ 0.27
APOBEC1-202ENST00000467171 NPM3O75607 178 aaKnown RBP16.69■□□□□ 0.26
APOBEC1-202ENST00000467171 DNAJC5BQ9UF47 199 aa16.69■□□□□ 0.26
APOBEC1-202ENST00000467171 RSF1Q96T23 1441 aaPredicted RBP16.64■□□□□ 0.25
APOBEC1-202ENST00000467171 CECR2Q9BXF3 1484 aa16.58■□□□□ 0.24
APOBEC1-202ENST00000467171 BICRAQ9NZM4 1560 aa16.57■□□□□ 0.24
APOBEC1-202ENST00000467171 UNC13AQ9UPW8 1703 aa16.56■□□□□ 0.24
APOBEC1-202ENST00000467171 C1QBPQ07021 282 aaKnown RBP16.53■□□□□ 0.24
APOBEC1-202ENST00000467171 BAZ1AQ9NRL2 1556 aaPredicted RBP16.5■□□□□ 0.23
APOBEC1-202ENST00000467171 MROH2BQ7Z745 1585 aa16.49■□□□□ 0.23
APOBEC1-202ENST00000467171 PABPN1Q86U42 306 aaKnown RBP eCLIP16.49■□□□□ 0.23
APOBEC1-202ENST00000467171 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.42■□□□□ 0.22
APOBEC1-202ENST00000467171 KCNA4P22459 653 aa16.38■□□□□ 0.21
APOBEC1-202ENST00000467171 SMARCA4P51532 1647 aa16.36■□□□□ 0.21
APOBEC1-202ENST00000467171 WIZO95785 1651 aa16.27■□□□□ 0.19
APOBEC1-202ENST00000467171 PEG3Q9GZU2 1588 aa16.23■□□□□ 0.19
APOBEC1-202ENST00000467171 TOP2AP11388 1531 aaKnown RBP16.21■□□□□ 0.19
APOBEC1-202ENST00000467171 ATAD2BQ9ULI0 1458 aa16.15■□□□□ 0.18
APOBEC1-202ENST00000467171 SMARCA2P51531 1590 aa16.12■□□□□ 0.17
APOBEC1-202ENST00000467171 EIF4G1Q04637 1599 aaKnown RBP16.07■□□□□ 0.16
APOBEC1-202ENST00000467171 CCDC88BA6NC98 1476 aa16.05■□□□□ 0.16
APOBEC1-202ENST00000467171 U3KPZ7 1027 aaPredicted RBP16.05■□□□□ 0.16
APOBEC1-202ENST00000467171 NCAPD3P42695 1498 aa16.03■□□□□ 0.16
APOBEC1-202ENST00000467171 BAZ1BQ9UIG0 1483 aaKnown RBP16.02■□□□□ 0.15
APOBEC1-202ENST00000467171 HMGXB3Q12766 1538 aa15.97■□□□□ 0.15
APOBEC1-202ENST00000467171 SLC4A2P04920 1241 aa15.91■□□□□ 0.14
APOBEC1-202ENST00000467171 TRIM41Q8WV44 630 aa15.86■□□□□ 0.13
APOBEC1-202ENST00000467171 CAPN15O75808 1086 aa15.79■□□□□ 0.12
APOBEC1-202ENST00000467171 SPINK5Q9NQ38 1064 aaPredicted RBP15.79■□□□□ 0.12
APOBEC1-202ENST00000467171 CC2D2AQ9P2K1 1620 aa15.77■□□□□ 0.12
APOBEC1-202ENST00000467171 APLP2Q06481 763 aa15.7■□□□□ 0.1
APOBEC1-202ENST00000467171 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.69■□□□□ 0.1
APOBEC1-202ENST00000467171 DSG3P32926 999 aa15.69■□□□□ 0.1
APOBEC1-202ENST00000467171 HNRNPUL2Q1KMD3 747 aaKnown RBP15.69■□□□□ 0.1
APOBEC1-202ENST00000467171 CFTRP13569 1480 aa15.68■□□□□ 0.1
APOBEC1-202ENST00000467171 WRNQ14191 1432 aaPredicted RBP eCLIP15.65■□□□□ 0.1
APOBEC1-202ENST00000467171 ABCC8Q09428 1581 aa15.64■□□□□ 0.09
APOBEC1-202ENST00000467171 CADPSQ9ULU8 1353 aa15.62■□□□□ 0.09
APOBEC1-202ENST00000467171 SAMD1Q6SPF0 538 aaPredicted RBP15.59■□□□□ 0.09
APOBEC1-202ENST00000467171 ZNF219Q9P2Y4 722 aaPredicted RBP15.57■□□□□ 0.08
APOBEC1-202ENST00000467171 EEA1Q15075 1411 aa15.54■□□□□ 0.08
APOBEC1-202ENST00000467171 LOC105371045A0A1W2PR82 267 aa15.54■□□□□ 0.08
APOBEC1-202ENST00000467171 TRHP20396 242 aaPredicted RBP15.53■□□□□ 0.08
APOBEC1-202ENST00000467171 FAM9AQ8IZU1 332 aaPredicted RBP15.5■□□□□ 0.07
APOBEC1-202ENST00000467171 SLC4A1APQ9BWU0 796 aaKnown RBP15.5■□□□□ 0.07
APOBEC1-202ENST00000467171 SYNJ1O43426 1573 aa15.49■□□□□ 0.07
APOBEC1-202ENST00000467171 MYCNP04198 464 aaPredicted RBP15.47■□□□□ 0.07
APOBEC1-202ENST00000467171 TOP2BQ02880 1626 aa15.46■□□□□ 0.07
APOBEC1-202ENST00000467171 SOGA1O94964 1423 aa15.45■□□□□ 0.06
APOBEC1-202ENST00000467171 CSRNP3Q8WYN3 585 aa15.42■□□□□ 0.06
APOBEC1-202ENST00000467171 BIVM-ERCC5R4GMW8 1640 aa15.42■□□□□ 0.06
APOBEC1-202ENST00000467171 CUX1P39880 1505 aa15.41■□□□□ 0.06
APOBEC1-202ENST00000467171 ABCB7O75027 752 aa15.4■□□□□ 0.06
APOBEC1-202ENST00000467171 LAMC3Q9Y6N6 1575 aa15.39■□□□□ 0.05
APOBEC1-202ENST00000467171 FANCD2Q9BXW9 1451 aa15.39■□□□□ 0.05
APOBEC1-202ENST00000467171 PRDM2Q13029 1718 aa15.38■□□□□ 0.05
APOBEC1-202ENST00000467171 RUSC2Q8N2Y8 1516 aa15.35■□□□□ 0.05
APOBEC1-202ENST00000467171 NESP48681 1621 aa15.33■□□□□ 0.04
APOBEC1-202ENST00000467171 FOXD4L1Q9NU39 408 aa15.33■□□□□ 0.04
APOBEC1-202ENST00000467171 PDS5BQ9NTI5 1447 aa15.33■□□□□ 0.04
APOBEC1-202ENST00000467171 TNIKQ9UKE5 1360 aa15.28■□□□□ 0.04
APOBEC1-202ENST00000467171 CEP164Q9UPV0 1460 aa15.27■□□□□ 0.04
APOBEC1-202ENST00000467171 KIF27Q86VH2 1401 aa15.27■□□□□ 0.04
APOBEC1-202ENST00000467171 GOLGA3Q08378 1498 aa15.27■□□□□ 0.03
APOBEC1-202ENST00000467171 DNMBPQ6XZF7 1577 aa15.24■□□□□ 0.03
APOBEC1-202ENST00000467171 FGD5Q6ZNL6 1462 aa15.23■□□□□ 0.03
APOBEC1-202ENST00000467171 KIF21BO75037 1637 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms