RNA–Protein interactions for RNA: ENST00000462539.1

SREBF2-204, Transcript of sterol regulatory element binding transcription factor 2, humanhuman

TSL 2

Gene SREBF2, Length 796 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF2-204ENST00000462539 NISCHQ9Y2I1 1504 aa15.42■□□□□ 0.06
SREBF2-204ENST00000462539 CHIC1Q5VXU3 224 aa13.58□□□□□ -0.24
SREBF2-204ENST00000462539 AEBP2Q6ZN18 517 aaPredicted RBP13.28□□□□□ -0.28
SREBF2-204ENST00000462539 CCDC180Q9P1Z9 1646 aa13.27□□□□□ -0.29
SREBF2-204ENST00000462539 ZCCHC6Q5VYS8 1495 aaKnown RBP13.1□□□□□ -0.31
SREBF2-204ENST00000462539 SHROOM4Q9ULL8 1493 aa12.98□□□□□ -0.33
SREBF2-204ENST00000462539 DCAF1Q9Y4B6 1507 aa12.74□□□□□ -0.37
SREBF2-204ENST00000462539 SUPT5HO00267 1087 aaKnown RBP12.69□□□□□ -0.38
SREBF2-204ENST00000462539 MYO15BQ96JP2 1530 aa12.59□□□□□ -0.39
SREBF2-204ENST00000462539 ABCC9O60706 1549 aa12.46□□□□□ -0.42
SREBF2-204ENST00000462539 DCAF8L2P0C7V8 631 aa12.39□□□□□ -0.43
SREBF2-204ENST00000462539 SCRIBQ14160 1630 aa12.29□□□□□ -0.44
SREBF2-204ENST00000462539 HRCP23327 699 aa12.25□□□□□ -0.45
SREBF2-204ENST00000462539 RB1CC1Q8TDY2 1594 aa12.15□□□□□ -0.46
SREBF2-204ENST00000462539 RSF1Q96T23 1441 aaPredicted RBP12.15□□□□□ -0.46
SREBF2-204ENST00000462539 NACADO15069 1562 aa12.12□□□□□ -0.47
SREBF2-204ENST00000462539 PCGF6Q9BYE7 350 aa12.08□□□□□ -0.48
SREBF2-204ENST00000462539 LOC105371045A0A1W2PR82 267 aa12.01□□□□□ -0.49
SREBF2-204ENST00000462539 PHF23Q9BUL5 403 aaPredicted RBP12.01□□□□□ -0.49
SREBF2-204ENST00000462539 EIF4G1Q04637 1599 aaKnown RBP11.97□□□□□ -0.49
SREBF2-204ENST00000462539 BAZ1AQ9NRL2 1556 aaPredicted RBP11.97□□□□□ -0.49
SREBF2-204ENST00000462539 MROH2BQ7Z745 1585 aa11.96□□□□□ -0.49
SREBF2-204ENST00000462539 WIZO95785 1651 aa11.96□□□□□ -0.5
SREBF2-204ENST00000462539 CECR2Q9BXF3 1484 aa11.95□□□□□ -0.5
SREBF2-204ENST00000462539 TRIM26Q12899 539 aaPredicted RBP11.91□□□□□ -0.5
SREBF2-204ENST00000462539 PPARGC1BQ86YN6 1023 aaKnown RBP11.9□□□□□ -0.5
SREBF2-204ENST00000462539 UNC13AQ9UPW8 1703 aa11.87□□□□□ -0.51
SREBF2-204ENST00000462539 TRIM41Q8WV44 630 aa11.85□□□□□ -0.51
SREBF2-204ENST00000462539 TOP2AP11388 1531 aaKnown RBP11.81□□□□□ -0.52
SREBF2-204ENST00000462539 SMARCA4P51532 1647 aa11.8□□□□□ -0.52
SREBF2-204ENST00000462539 SMARCA2P51531 1590 aa11.74□□□□□ -0.53
SREBF2-204ENST00000462539 ZEB1P37275 1124 aaPredicted RBP11.72□□□□□ -0.53
SREBF2-204ENST00000462539 FAM9AQ8IZU1 332 aaPredicted RBP11.71□□□□□ -0.53
SREBF2-204ENST00000462539 ABCC8Q09428 1581 aa11.67□□□□□ -0.54
SREBF2-204ENST00000462539 CCDC88BA6NC98 1476 aa11.64□□□□□ -0.55
SREBF2-204ENST00000462539 BICRAQ9NZM4 1560 aa11.59□□□□□ -0.55
SREBF2-204ENST00000462539 WRNQ14191 1432 aaPredicted RBP eCLIP11.59□□□□□ -0.55
SREBF2-204ENST00000462539 PEG3Q9GZU2 1588 aa11.58□□□□□ -0.55
SREBF2-204ENST00000462539 EEA1Q15075 1411 aa11.54□□□□□ -0.56
SREBF2-204ENST00000462539 EHMT2Q96KQ7 1210 aa11.54□□□□□ -0.56
SREBF2-204ENST00000462539 CEP162Q5TB80 1403 aa11.52□□□□□ -0.57
SREBF2-204ENST00000462539 TNIKQ9UKE5 1360 aa11.49□□□□□ -0.57
SREBF2-204ENST00000462539 SOGA1O94964 1423 aa11.49□□□□□ -0.57
SREBF2-204ENST00000462539 KIF21BO75037 1637 aa11.49□□□□□ -0.57
SREBF2-204ENST00000462539 SYNJ1O43426 1573 aa11.47□□□□□ -0.57
SREBF2-204ENST00000462539 GOLGA3Q08378 1498 aa11.46□□□□□ -0.57
SREBF2-204ENST00000462539 DNAJC5BQ9UF47 199 aa11.46□□□□□ -0.57
SREBF2-204ENST00000462539 RUSC2Q8N2Y8 1516 aa11.45□□□□□ -0.58
SREBF2-204ENST00000462539 SENP3Q9H4L4 574 aaPredicted RBP11.41□□□□□ -0.58
SREBF2-204ENST00000462539 CEP164Q9UPV0 1460 aa11.38□□□□□ -0.59
SREBF2-204ENST00000462539 BIVM-ERCC5R4GMW8 1640 aa11.37□□□□□ -0.59
SREBF2-204ENST00000462539 ATAD2BQ9ULI0 1458 aa11.37□□□□□ -0.59
SREBF2-204ENST00000462539 CSRNP3Q8WYN3 585 aa11.36□□□□□ -0.59
SREBF2-204ENST00000462539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.35□□□□□ -0.59
SREBF2-204ENST00000462539 BAZ1BQ9UIG0 1483 aaKnown RBP11.35□□□□□ -0.59
SREBF2-204ENST00000462539 PLPPR3Q6T4P5 718 aa11.34□□□□□ -0.59
SREBF2-204ENST00000462539 CCER1Q8TC90 406 aaPredicted RBP11.34□□□□□ -0.59
SREBF2-204ENST00000462539 TOP2BQ02880 1626 aa11.34□□□□□ -0.59
SREBF2-204ENST00000462539 SCAF1Q9H7N4 1312 aaKnown RBP11.31□□□□□ -0.6
SREBF2-204ENST00000462539 PABPN1Q86U42 306 aaKnown RBP eCLIP11.29□□□□□ -0.6
SREBF2-204ENST00000462539 PRDM2Q13029 1718 aa11.28□□□□□ -0.6
SREBF2-204ENST00000462539 CLIP1P30622 1438 aa11.26□□□□□ -0.61
SREBF2-204ENST00000462539 VPS8Q8N3P4 1428 aa11.26□□□□□ -0.61
SREBF2-204ENST00000462539 HMGXB3Q12766 1538 aa11.25□□□□□ -0.61
SREBF2-204ENST00000462539 ERICH3Q5RHP9 1530 aa11.25□□□□□ -0.61
SREBF2-204ENST00000462539 UBTFP17480 764 aaKnown RBP11.25□□□□□ -0.61
SREBF2-204ENST00000462539 RAPGEF2Q9Y4G8 1499 aa11.24□□□□□ -0.61
SREBF2-204ENST00000462539 TTBK1Q5TCY1 1321 aaPredicted RBP11.23□□□□□ -0.61
SREBF2-204ENST00000462539 PELP1Q8IZL8 1130 aaKnown RBP11.21□□□□□ -0.61
SREBF2-204ENST00000462539 ACIN1Q9UKV3 1341 aaKnown RBP11.19□□□□□ -0.62
SREBF2-204ENST00000462539 DIEXFQ68CQ4 756 aaKnown RBP11.18□□□□□ -0.62
SREBF2-204ENST00000462539 ARAP1Q96P48 1450 aa11.17□□□□□ -0.62
SREBF2-204ENST00000462539 CUX1P39880 1505 aa11.16□□□□□ -0.62
SREBF2-204ENST00000462539 PRXQ9BXM0 1461 aa11.16□□□□□ -0.62
SREBF2-204ENST00000462539 NCAPD3P42695 1498 aa11.13□□□□□ -0.63
SREBF2-204ENST00000462539 NEUROD1Q13562 356 aa11.13□□□□□ -0.63
SREBF2-204ENST00000462539 ZNF316A6NFI3 1004 aaPredicted RBP11.12□□□□□ -0.63
SREBF2-204ENST00000462539 CENPBP07199 599 aaPredicted RBP11.1□□□□□ -0.63
SREBF2-204ENST00000462539 DNAJC5Q9H3Z4 198 aa11.09□□□□□ -0.63
SREBF2-204ENST00000462539 CFTRP13569 1480 aa11.06□□□□□ -0.64
SREBF2-204ENST00000462539 HNRNPUL2Q1KMD3 747 aaKnown RBP11.05□□□□□ -0.64
SREBF2-204ENST00000462539 KIF27Q86VH2 1401 aa11.05□□□□□ -0.64
SREBF2-204ENST00000462539 CUX2O14529 1486 aa11.04□□□□□ -0.64
SREBF2-204ENST00000462539 RRBP1Q9P2E9 1410 aaKnown RBP11.03□□□□□ -0.64
SREBF2-204ENST00000462539 APLP2Q06481 763 aa11.03□□□□□ -0.64
SREBF2-204ENST00000462539 CFAP43Q8NDM7 1665 aa11.02□□□□□ -0.64
SREBF2-204ENST00000462539 ARHGAP35Q9NRY4 1499 aa11.02□□□□□ -0.65
SREBF2-204ENST00000462539 GTF3C3Q9Y5Q9 886 aa11.01□□□□□ -0.65
SREBF2-204ENST00000462539 CLSPNQ9HAW4 1339 aa11□□□□□ -0.65
SREBF2-204ENST00000462539 DHX57Q6P158 1386 aaKnown RBP11□□□□□ -0.65
SREBF2-204ENST00000462539 TIAM1Q13009 1591 aa10.99□□□□□ -0.65
SREBF2-204ENST00000462539 MAP3K1Q13233 1512 aa10.98□□□□□ -0.65
SREBF2-204ENST00000462539 RANGAP1P46060 587 aaPredicted RBP10.94□□□□□ -0.66
SREBF2-204ENST00000462539 CTTNBP2Q8WZ74 1663 aa10.93□□□□□ -0.66
SREBF2-204ENST00000462539 KANK4Q5T7N3 995 aaPredicted RBP10.93□□□□□ -0.66
SREBF2-204ENST00000462539 MIER1Q8N108 512 aa10.93□□□□□ -0.66
SREBF2-204ENST00000462539 PCF11O94913 1555 aaKnown RBP10.93□□□□□ -0.66
SREBF2-204ENST00000462539 FGD5Q6ZNL6 1462 aa10.93□□□□□ -0.66
SREBF2-204ENST00000462539 CCNB3Q8WWL7 1395 aa10.9□□□□□ -0.66
SREBF2-204ENST00000462539 WDR97A6NE52 1622 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms