RNA–Protein interactions for RNA: ENST00000461159.6

HDAC9-219, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-219ENST00000461159 NISCHQ9Y2I1 1504 aa18.32■□□□□ 0.52
HDAC9-219ENST00000461159 CCDC180Q9P1Z9 1646 aa15.83■□□□□ 0.12
HDAC9-219ENST00000461159 DCAF8L2P0C7V8 631 aa15.55■□□□□ 0.08
HDAC9-219ENST00000461159 ABCC9O60706 1549 aa15.39■□□□□ 0.05
HDAC9-219ENST00000461159 ZCCHC6Q5VYS8 1495 aaKnown RBP15.36■□□□□ 0.05
HDAC9-219ENST00000461159 SHROOM4Q9ULL8 1493 aa15.25■□□□□ 0.03
HDAC9-219ENST00000461159 PELP1Q8IZL8 1130 aaKnown RBP15.04■□□□□ -0
HDAC9-219ENST00000461159 DCAF1Q9Y4B6 1507 aa15□□□□□ -0.01
HDAC9-219ENST00000461159 MYT1Q01538 1121 aa14.94□□□□□ -0.02
HDAC9-219ENST00000461159 NACADO15069 1562 aa14.83□□□□□ -0.04
HDAC9-219ENST00000461159 SCRIBQ14160 1630 aa14.82□□□□□ -0.04
HDAC9-219ENST00000461159 MYO15BQ96JP2 1530 aa14.79□□□□□ -0.04
HDAC9-219ENST00000461159 RB1CC1Q8TDY2 1594 aa14.76□□□□□ -0.05
HDAC9-219ENST00000461159 SUPT5HO00267 1087 aaKnown RBP14.63□□□□□ -0.07
HDAC9-219ENST00000461159 PABPN1Q86U42 306 aaKnown RBP eCLIP14.61□□□□□ -0.07
HDAC9-219ENST00000461159 UNC13AQ9UPW8 1703 aa14.51□□□□□ -0.09
HDAC9-219ENST00000461159 TTBK1Q5TCY1 1321 aaPredicted RBP14.5□□□□□ -0.09
HDAC9-219ENST00000461159 CECR2Q9BXF3 1484 aa14.39□□□□□ -0.11
HDAC9-219ENST00000461159 BICRAQ9NZM4 1560 aa14.38□□□□□ -0.11
HDAC9-219ENST00000461159 RSF1Q96T23 1441 aaPredicted RBP14.26□□□□□ -0.13
HDAC9-219ENST00000461159 MROH2BQ7Z745 1585 aa14.24□□□□□ -0.13
HDAC9-219ENST00000461159 WIZO95785 1651 aa14.12□□□□□ -0.15
HDAC9-219ENST00000461159 BAZ1AQ9NRL2 1556 aaPredicted RBP14.11□□□□□ -0.15
HDAC9-219ENST00000461159 SMARCA4P51532 1647 aa14.08□□□□□ -0.15
HDAC9-219ENST00000461159 SLC24A1O60721 1099 aa13.98□□□□□ -0.17
HDAC9-219ENST00000461159 EIF4G1Q04637 1599 aaKnown RBP13.97□□□□□ -0.17
HDAC9-219ENST00000461159 PRKCSHP14314 528 aaPredicted RBP13.92□□□□□ -0.18
HDAC9-219ENST00000461159 ATAD2BQ9ULI0 1458 aa13.91□□□□□ -0.18
HDAC9-219ENST00000461159 CHIC1Q5VXU3 224 aa13.89□□□□□ -0.19
HDAC9-219ENST00000461159 TOP2AP11388 1531 aaKnown RBP13.85□□□□□ -0.19
HDAC9-219ENST00000461159 BAZ1BQ9UIG0 1483 aaKnown RBP13.84□□□□□ -0.19
HDAC9-219ENST00000461159 ERICH6Q7L0X2 663 aa13.82□□□□□ -0.2
HDAC9-219ENST00000461159 PEG3Q9GZU2 1588 aa13.82□□□□□ -0.2
HDAC9-219ENST00000461159 CCDC88BA6NC98 1476 aa13.82□□□□□ -0.2
HDAC9-219ENST00000461159 SMARCA2P51531 1590 aa13.81□□□□□ -0.2
HDAC9-219ENST00000461159 CC2D2AQ9P2K1 1620 aa13.8□□□□□ -0.2
HDAC9-219ENST00000461159 APLP2Q06481 763 aa13.78□□□□□ -0.2
HDAC9-219ENST00000461159 DNAJC5BQ9UF47 199 aa13.78□□□□□ -0.2
HDAC9-219ENST00000461159 NCAPD3P42695 1498 aa13.74□□□□□ -0.21
HDAC9-219ENST00000461159 HMGXB3Q12766 1538 aa13.66□□□□□ -0.22
HDAC9-219ENST00000461159 HRCP23327 699 aa13.66□□□□□ -0.22
HDAC9-219ENST00000461159 TRIM41Q8WV44 630 aa13.64□□□□□ -0.23
HDAC9-219ENST00000461159 ABCC8Q09428 1581 aa13.58□□□□□ -0.23
HDAC9-219ENST00000461159 FAM9AQ8IZU1 332 aaPredicted RBP13.57□□□□□ -0.24
HDAC9-219ENST00000461159 EHMT2Q96KQ7 1210 aa13.53□□□□□ -0.24
HDAC9-219ENST00000461159 NESP48681 1621 aa13.49□□□□□ -0.25
HDAC9-219ENST00000461159 LOC105371045A0A1W2PR82 267 aa13.48□□□□□ -0.25
HDAC9-219ENST00000461159 CADPSQ9ULU8 1353 aa13.46□□□□□ -0.25
HDAC9-219ENST00000461159 CFTRP13569 1480 aa13.45□□□□□ -0.26
HDAC9-219ENST00000461159 PCGF6Q9BYE7 350 aa13.42□□□□□ -0.26
HDAC9-219ENST00000461159 WRNQ14191 1432 aaPredicted RBP eCLIP13.42□□□□□ -0.26
HDAC9-219ENST00000461159 BCL11AQ9H165 835 aa13.42□□□□□ -0.26
HDAC9-219ENST00000461159 SYNJ1O43426 1573 aa13.37□□□□□ -0.27
HDAC9-219ENST00000461159 DAXXQ9UER7 740 aaPredicted RBP13.37□□□□□ -0.27
HDAC9-219ENST00000461159 SOGA1O94964 1423 aa13.33□□□□□ -0.28
HDAC9-219ENST00000461159 FANCD2Q9BXW9 1451 aa13.33□□□□□ -0.28
HDAC9-219ENST00000461159 RUSC2Q8N2Y8 1516 aa13.32□□□□□ -0.28
HDAC9-219ENST00000461159 CUX1P39880 1505 aa13.29□□□□□ -0.28
HDAC9-219ENST00000461159 LAMC3Q9Y6N6 1575 aa13.26□□□□□ -0.29
HDAC9-219ENST00000461159 SCAF1Q9H7N4 1312 aaKnown RBP13.25□□□□□ -0.29
HDAC9-219ENST00000461159 PPARGC1BQ86YN6 1023 aaKnown RBP13.25□□□□□ -0.29
HDAC9-219ENST00000461159 PRDM2Q13029 1718 aa13.24□□□□□ -0.29
HDAC9-219ENST00000461159 TOP2BQ02880 1626 aa13.23□□□□□ -0.29
HDAC9-219ENST00000461159 PDS5BQ9NTI5 1447 aa13.23□□□□□ -0.29
HDAC9-219ENST00000461159 CEP164Q9UPV0 1460 aa13.22□□□□□ -0.29
HDAC9-219ENST00000461159 KIF21AQ7Z4S6 1674 aa13.21□□□□□ -0.3
HDAC9-219ENST00000461159 BIVM-ERCC5R4GMW8 1640 aa13.2□□□□□ -0.3
HDAC9-219ENST00000461159 CSRNP3Q8WYN3 585 aa13.18□□□□□ -0.3
HDAC9-219ENST00000461159 FGD5Q6ZNL6 1462 aa13.17□□□□□ -0.3
HDAC9-219ENST00000461159 URB2Q14146 1524 aaKnown RBP13.17□□□□□ -0.3
HDAC9-219ENST00000461159 RAD54L2Q9Y4B4 1467 aa13.16□□□□□ -0.3
HDAC9-219ENST00000461159 ERCC6Q03468 1493 aa13.15□□□□□ -0.3
HDAC9-219ENST00000461159 TOPBP1Q92547 1522 aa13.15□□□□□ -0.3
HDAC9-219ENST00000461159 TRIM26Q12899 539 aaPredicted RBP13.14□□□□□ -0.31
HDAC9-219ENST00000461159 RANGAP1P46060 587 aaPredicted RBP13.12□□□□□ -0.31
HDAC9-219ENST00000461159 UBTFP17480 764 aaKnown RBP13.12□□□□□ -0.31
HDAC9-219ENST00000461159 POLA1P09884 1462 aaPredicted RBP13.11□□□□□ -0.31
HDAC9-219ENST00000461159 DNMBPQ6XZF7 1577 aa13.1□□□□□ -0.31
HDAC9-219ENST00000461159 CUX2O14529 1486 aa13.1□□□□□ -0.31
HDAC9-219ENST00000461159 EEA1Q15075 1411 aa13.09□□□□□ -0.31
HDAC9-219ENST00000461159 TDRD9Q8NDG6 1382 aaKnown RBP13.07□□□□□ -0.32
HDAC9-219ENST00000461159 KIF27Q86VH2 1401 aa13.06□□□□□ -0.32
HDAC9-219ENST00000461159 ZEB1P37275 1124 aaPredicted RBP13.05□□□□□ -0.32
HDAC9-219ENST00000461159 MRC2Q9UBG0 1479 aa13.05□□□□□ -0.32
HDAC9-219ENST00000461159 RAPGEF2Q9Y4G8 1499 aa13.02□□□□□ -0.33
HDAC9-219ENST00000461159 IGF1RP08069 1367 aa13□□□□□ -0.33
HDAC9-219ENST00000461159 CENPBP07199 599 aaPredicted RBP12.98□□□□□ -0.33
HDAC9-219ENST00000461159 AQRO60306 1485 aaKnown RBP eCLIP12.98□□□□□ -0.33
HDAC9-219ENST00000461159 GOLGA3Q08378 1498 aa12.97□□□□□ -0.33
HDAC9-219ENST00000461159 ABCA10Q8WWZ4 1543 aa12.97□□□□□ -0.33
HDAC9-219ENST00000461159 ZNF608Q9ULD9 1512 aaPredicted RBP12.95□□□□□ -0.34
HDAC9-219ENST00000461159 KIF21BO75037 1637 aa12.95□□□□□ -0.34
HDAC9-219ENST00000461159 TNIKQ9UKE5 1360 aa12.95□□□□□ -0.34
HDAC9-219ENST00000461159 PRXQ9BXM0 1461 aa12.95□□□□□ -0.34
HDAC9-219ENST00000461159 WDR62O43379 1518 aa12.94□□□□□ -0.34
HDAC9-219ENST00000461159 THOC2Q8NI27 1593 aaKnown RBP12.94□□□□□ -0.34
HDAC9-219ENST00000461159 CARMIL1Q5VZK9 1371 aa12.94□□□□□ -0.34
HDAC9-219ENST00000461159 CEP162Q5TB80 1403 aa12.94□□□□□ -0.34
HDAC9-219ENST00000461159 EIF5BO60841 1220 aaKnown RBP12.92□□□□□ -0.34
HDAC9-219ENST00000461159 TARBP1Q13395 1621 aaKnown RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms