RNA–Protein interactions for RNA: ENST00000461115.5

IFT88-204, Transcript of intraflagellar transport 88, humanhuman

TSL 2

Gene IFT88, Length 1,440 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-204ENST00000461115 AEBP2Q6ZN18 517 aaPredicted RBP26.99■■□□□ 1.91
IFT88-204ENST00000461115 CHIC1Q5VXU3 224 aa25.95■■□□□ 1.74
IFT88-204ENST00000461115 NISCHQ9Y2I1 1504 aa24.44■■□□□ 1.5
IFT88-204ENST00000461115 SENP3Q9H4L4 574 aaPredicted RBP23.16■■□□□ 1.3
IFT88-204ENST00000461115 PHF23Q9BUL5 403 aaPredicted RBP22.87■■□□□ 1.25
IFT88-204ENST00000461115 FOXD1Q16676 465 aa21.46■■□□□ 1.03
IFT88-204ENST00000461115 CCDC180Q9P1Z9 1646 aa21.31■■□□□ 1
IFT88-204ENST00000461115 PLPPR3Q6T4P5 718 aa20.93■□□□□ 0.94
IFT88-204ENST00000461115 ZCCHC6Q5VYS8 1495 aaKnown RBP20.59■□□□□ 0.89
IFT88-204ENST00000461115 DCAF1Q9Y4B6 1507 aa20.34■□□□□ 0.85
IFT88-204ENST00000461115 ADRA2BP18089 450 aa20.22■□□□□ 0.83
IFT88-204ENST00000461115 PPP6R1Q9UPN7 881 aa20.21■□□□□ 0.83
IFT88-204ENST00000461115 PIAS4Q8N2W9 510 aaPredicted RBP20.2■□□□□ 0.82
IFT88-204ENST00000461115 MSH5O43196 834 aa20.12■□□□□ 0.81
IFT88-204ENST00000461115 MYO15BQ96JP2 1530 aa20.06■□□□□ 0.8
IFT88-204ENST00000461115 SHROOM4Q9ULL8 1493 aa19.77■□□□□ 0.76
IFT88-204ENST00000461115 DCAF8L2P0C7V8 631 aa19.76■□□□□ 0.75
IFT88-204ENST00000461115 NACADO15069 1562 aa19.75■□□□□ 0.75
IFT88-204ENST00000461115 ABCC9O60706 1549 aa19.72■□□□□ 0.75
IFT88-204ENST00000461115 RB1CC1Q8TDY2 1594 aa19.48■□□□□ 0.71
IFT88-204ENST00000461115 SCRIBQ14160 1630 aa19.42■□□□□ 0.7
IFT88-204ENST00000461115 UNC13AQ9UPW8 1703 aa19.17■□□□□ 0.66
IFT88-204ENST00000461115 POTEDQ86YR6 584 aa19.16■□□□□ 0.66
IFT88-204ENST00000461115 SUPT5HO00267 1087 aaKnown RBP19.13■□□□□ 0.65
IFT88-204ENST00000461115 RSF1Q96T23 1441 aaPredicted RBP19.01■□□□□ 0.63
IFT88-204ENST00000461115 BICRAQ9NZM4 1560 aa18.94■□□□□ 0.62
IFT88-204ENST00000461115 CECR2Q9BXF3 1484 aa18.9■□□□□ 0.62
IFT88-204ENST00000461115 BAZ1AQ9NRL2 1556 aaPredicted RBP18.85■□□□□ 0.61
IFT88-204ENST00000461115 MROH2BQ7Z745 1585 aa18.84■□□□□ 0.61
IFT88-204ENST00000461115 SMARCA4P51532 1647 aa18.74■□□□□ 0.59
IFT88-204ENST00000461115 SCAF1Q9H7N4 1312 aaKnown RBP18.7■□□□□ 0.58
IFT88-204ENST00000461115 WIZO95785 1651 aa18.69■□□□□ 0.58
IFT88-204ENST00000461115 PEG3Q9GZU2 1588 aa18.61■□□□□ 0.57
IFT88-204ENST00000461115 PABPN1Q86U42 306 aaKnown RBP eCLIP18.57■□□□□ 0.56
IFT88-204ENST00000461115 TOP2AP11388 1531 aaKnown RBP18.55■□□□□ 0.56
IFT88-204ENST00000461115 MAPK8IP2Q13387 824 aaPredicted RBP18.49■□□□□ 0.55
IFT88-204ENST00000461115 SMARCA2P51531 1590 aa18.38■□□□□ 0.53
IFT88-204ENST00000461115 EIF4G1Q04637 1599 aaKnown RBP18.38■□□□□ 0.53
IFT88-204ENST00000461115 ATAD2BQ9ULI0 1458 aa18.36■□□□□ 0.53
IFT88-204ENST00000461115 PPP4R3CPQ6ZMV5 832 aa18.34■□□□□ 0.53
IFT88-204ENST00000461115 DMRT2Q9Y5R5 561 aa18.34■□□□□ 0.53
IFT88-204ENST00000461115 CCDC88BA6NC98 1476 aa18.31■□□□□ 0.52
IFT88-204ENST00000461115 HMGXB3Q12766 1538 aa18.23■□□□□ 0.51
IFT88-204ENST00000461115 NCAPD3P42695 1498 aa18.23■□□□□ 0.51
IFT88-204ENST00000461115 BAZ1BQ9UIG0 1483 aaKnown RBP18.22■□□□□ 0.51
IFT88-204ENST00000461115 TRIM41Q8WV44 630 aa18.05■□□□□ 0.48
IFT88-204ENST00000461115 CNKSR2Q8WXI2 1034 aa17.97■□□□□ 0.47
IFT88-204ENST00000461115 CC2D2AQ9P2K1 1620 aa17.96■□□□□ 0.47
IFT88-204ENST00000461115 ABCC8Q09428 1581 aa17.93■□□□□ 0.46
IFT88-204ENST00000461115 PRDM2Q13029 1718 aa17.86■□□□□ 0.45
IFT88-204ENST00000461115 CFTRP13569 1480 aa17.86■□□□□ 0.45
IFT88-204ENST00000461115 WRNQ14191 1432 aaPredicted RBP eCLIP17.84■□□□□ 0.45
IFT88-204ENST00000461115 NCBP3Q53F19 620 aaKnown RBP17.83■□□□□ 0.45
IFT88-204ENST00000461115 SYNJ1O43426 1573 aa17.78■□□□□ 0.44
IFT88-204ENST00000461115 EEA1Q15075 1411 aa17.77■□□□□ 0.44
IFT88-204ENST00000461115 BIVM-ERCC5R4GMW8 1640 aa17.76■□□□□ 0.43
IFT88-204ENST00000461115 TOP2BQ02880 1626 aa17.75■□□□□ 0.43
IFT88-204ENST00000461115 LOC105371045A0A1W2PR82 267 aa17.75■□□□□ 0.43
IFT88-204ENST00000461115 DCAF8L1A6NGE4 600 aa17.75■□□□□ 0.43
IFT88-204ENST00000461115 HOXD11P31277 338 aaPredicted RBP17.74■□□□□ 0.43
IFT88-204ENST00000461115 RNF216Q9NWF9 866 aaPredicted RBP17.72■□□□□ 0.43
IFT88-204ENST00000461115 CADPSQ9ULU8 1353 aa17.71■□□□□ 0.42
IFT88-204ENST00000461115 SOGA1O94964 1423 aa17.64■□□□□ 0.41
IFT88-204ENST00000461115 CUX1P39880 1505 aa17.61■□□□□ 0.41
IFT88-204ENST00000461115 FAM9AQ8IZU1 332 aaPredicted RBP17.6■□□□□ 0.41
IFT88-204ENST00000461115 RUSC2Q8N2Y8 1516 aa17.57■□□□□ 0.4
IFT88-204ENST00000461115 LAMC3Q9Y6N6 1575 aa17.56■□□□□ 0.4
IFT88-204ENST00000461115 CSRNP3Q8WYN3 585 aa17.55■□□□□ 0.4
IFT88-204ENST00000461115 KIF21BO75037 1637 aa17.54■□□□□ 0.4
IFT88-204ENST00000461115 TNIKQ9UKE5 1360 aa17.48■□□□□ 0.39
IFT88-204ENST00000461115 FANCD2Q9BXW9 1451 aa17.48■□□□□ 0.39
IFT88-204ENST00000461115 CEP164Q9UPV0 1460 aa17.46■□□□□ 0.39
IFT88-204ENST00000461115 GOLGA3Q08378 1498 aa17.46■□□□□ 0.38
IFT88-204ENST00000461115 DNMBPQ6XZF7 1577 aa17.42■□□□□ 0.38
IFT88-204ENST00000461115 NESP48681 1621 aa17.42■□□□□ 0.38
IFT88-204ENST00000461115 NPM3O75607 178 aaKnown RBP17.39■□□□□ 0.38
IFT88-204ENST00000461115 ERICH3Q5RHP9 1530 aa17.39■□□□□ 0.37
IFT88-204ENST00000461115 PRXQ9BXM0 1461 aa17.38■□□□□ 0.37
IFT88-204ENST00000461115 KIF27Q86VH2 1401 aa17.37■□□□□ 0.37
IFT88-204ENST00000461115 FGD5Q6ZNL6 1462 aa17.36■□□□□ 0.37
IFT88-204ENST00000461115 PDS5BQ9NTI5 1447 aa17.35■□□□□ 0.37
IFT88-204ENST00000461115 TOPBP1Q92547 1522 aa17.35■□□□□ 0.37
IFT88-204ENST00000461115 DNAJC5BQ9UF47 199 aa17.33■□□□□ 0.36
IFT88-204ENST00000461115 CEP162Q5TB80 1403 aa17.32■□□□□ 0.36
IFT88-204ENST00000461115 RAPGEF2Q9Y4G8 1499 aa17.29■□□□□ 0.36
IFT88-204ENST00000461115 ABCA10Q8WWZ4 1543 aa17.28■□□□□ 0.36
IFT88-204ENST00000461115 KIF21AQ7Z4S6 1674 aa17.28■□□□□ 0.36
IFT88-204ENST00000461115 URB2Q14146 1524 aaKnown RBP17.27■□□□□ 0.36
IFT88-204ENST00000461115 POLA1P09884 1462 aaPredicted RBP17.27■□□□□ 0.36
IFT88-204ENST00000461115 KCNA4P22459 653 aa17.26■□□□□ 0.35
IFT88-204ENST00000461115 WDR97A6NE52 1622 aa17.26■□□□□ 0.35
IFT88-204ENST00000461115 CUX2O14529 1486 aa17.24■□□□□ 0.35
IFT88-204ENST00000461115 IGF1RP08069 1367 aa17.22■□□□□ 0.35
IFT88-204ENST00000461115 UBTFP17480 764 aaKnown RBP17.21■□□□□ 0.34
IFT88-204ENST00000461115 EHMT2Q96KQ7 1210 aa17.21■□□□□ 0.34
IFT88-204ENST00000461115 TRIM26Q12899 539 aaPredicted RBP17.19■□□□□ 0.34
IFT88-204ENST00000461115 CACNB1Q02641 598 aaPredicted RBP17.17■□□□□ 0.34
IFT88-204ENST00000461115 CLIP1P30622 1438 aa17.15■□□□□ 0.34
IFT88-204ENST00000461115 RAD54L2Q9Y4B4 1467 aa17.15■□□□□ 0.34
IFT88-204ENST00000461115 ABCA5Q8WWZ7 1642 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms