RNA–Protein interactions for RNA: ENST00000459854.5

UFD1-205, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best)

Gene UFD1, Length 5,038 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-205ENST00000459854 NISCHQ9Y2I1 1504 aa19.55■□□□□ 0.72
UFD1-205ENST00000459854 DCAF8L2P0C7V8 631 aa17.15■□□□□ 0.34
UFD1-205ENST00000459854 CCDC180Q9P1Z9 1646 aa17.05■□□□□ 0.32
UFD1-205ENST00000459854 ABCC9O60706 1549 aa16.78■□□□□ 0.28
UFD1-205ENST00000459854 ZCCHC6Q5VYS8 1495 aaKnown RBP16.28■□□□□ 0.2
UFD1-205ENST00000459854 SHROOM4Q9ULL8 1493 aa16.18■□□□□ 0.18
UFD1-205ENST00000459854 RB1CC1Q8TDY2 1594 aa16.18■□□□□ 0.18
UFD1-205ENST00000459854 NACADO15069 1562 aa16.17■□□□□ 0.18
UFD1-205ENST00000459854 DCAF1Q9Y4B6 1507 aa16.07■□□□□ 0.16
UFD1-205ENST00000459854 MYO15BQ96JP2 1530 aa15.99■□□□□ 0.15
UFD1-205ENST00000459854 PELP1Q8IZL8 1130 aaKnown RBP15.97■□□□□ 0.15
UFD1-205ENST00000459854 MYT1Q01538 1121 aa15.92■□□□□ 0.14
UFD1-205ENST00000459854 PABPN1Q86U42 306 aaKnown RBP eCLIP15.91■□□□□ 0.14
UFD1-205ENST00000459854 SCRIBQ14160 1630 aa15.84■□□□□ 0.13
UFD1-205ENST00000459854 SUPT5HO00267 1087 aaKnown RBP15.65■□□□□ 0.1
UFD1-205ENST00000459854 BAZ1AQ9NRL2 1556 aaPredicted RBP15.24■□□□□ 0.03
UFD1-205ENST00000459854 BICRAQ9NZM4 1560 aa15.22■□□□□ 0.03
UFD1-205ENST00000459854 CENPBP07199 599 aaPredicted RBP15.19■□□□□ 0.02
UFD1-205ENST00000459854 UNC13AQ9UPW8 1703 aa15.18■□□□□ 0.02
UFD1-205ENST00000459854 CECR2Q9BXF3 1484 aa15.17■□□□□ 0.02
UFD1-205ENST00000459854 CCER1Q8TC90 406 aaPredicted RBP15.17■□□□□ 0.02
UFD1-205ENST00000459854 ZEB1P37275 1124 aaPredicted RBP15.14■□□□□ 0.01
UFD1-205ENST00000459854 RSF1Q96T23 1441 aaPredicted RBP15.09■□□□□ 0.01
UFD1-205ENST00000459854 SMARCA2P51531 1590 aa15.09■□□□□ 0.01
UFD1-205ENST00000459854 BAZ1BQ9UIG0 1483 aaKnown RBP15.08■□□□□ 0.01
UFD1-205ENST00000459854 EIF4G1Q04637 1599 aaKnown RBP15.07■□□□□ 0
UFD1-205ENST00000459854 ERICH6Q7L0X2 663 aa15.05■□□□□ 0
UFD1-205ENST00000459854 SMARCA4P51532 1647 aa15.03■□□□□ -0
UFD1-205ENST00000459854 MROH2BQ7Z745 1585 aa15.03■□□□□ -0
UFD1-205ENST00000459854 ATAD2BQ9ULI0 1458 aa14.97□□□□□ -0.01
UFD1-205ENST00000459854 CC2D2AQ9P2K1 1620 aa14.92□□□□□ -0.02
UFD1-205ENST00000459854 NCAPD3P42695 1498 aa14.9□□□□□ -0.02
UFD1-205ENST00000459854 WIZO95785 1651 aa14.83□□□□□ -0.04
UFD1-205ENST00000459854 TOP2AP11388 1531 aaKnown RBP14.82□□□□□ -0.04
UFD1-205ENST00000459854 DNAJC5BQ9UF47 199 aa14.81□□□□□ -0.04
UFD1-205ENST00000459854 HMGXB3Q12766 1538 aa14.78□□□□□ -0.04
UFD1-205ENST00000459854 TRIM41Q8WV44 630 aa14.78□□□□□ -0.04
UFD1-205ENST00000459854 ERCC6Q03468 1493 aa14.71□□□□□ -0.05
UFD1-205ENST00000459854 PCGF6Q9BYE7 350 aa14.7□□□□□ -0.06
UFD1-205ENST00000459854 PEG3Q9GZU2 1588 aa14.7□□□□□ -0.06
UFD1-205ENST00000459854 APLP2Q06481 763 aa14.7□□□□□ -0.06
UFD1-205ENST00000459854 CCDC88BA6NC98 1476 aa14.68□□□□□ -0.06
UFD1-205ENST00000459854 PDS5BQ9NTI5 1447 aa14.68□□□□□ -0.06
UFD1-205ENST00000459854 CADPSQ9ULU8 1353 aa14.67□□□□□ -0.06
UFD1-205ENST00000459854 NEFLP07196 543 aa14.64□□□□□ -0.07
UFD1-205ENST00000459854 YTHDC1Q96MU7 727 aaKnown RBP14.61□□□□□ -0.07
UFD1-205ENST00000459854 TTBK1Q5TCY1 1321 aaPredicted RBP14.59□□□□□ -0.07
UFD1-205ENST00000459854 FAM9AQ8IZU1 332 aaPredicted RBP14.52□□□□□ -0.08
UFD1-205ENST00000459854 CEP164Q9UPV0 1460 aa14.49□□□□□ -0.09
UFD1-205ENST00000459854 CHIC1Q5VXU3 224 aa14.48□□□□□ -0.09
UFD1-205ENST00000459854 FANCD2Q9BXW9 1451 aa14.47□□□□□ -0.09
UFD1-205ENST00000459854 CFTRP13569 1480 aa14.47□□□□□ -0.09
UFD1-205ENST00000459854 HRCP23327 699 aa14.45□□□□□ -0.1
UFD1-205ENST00000459854 WRNQ14191 1432 aaPredicted RBP eCLIP14.45□□□□□ -0.1
UFD1-205ENST00000459854 LAMC3Q9Y6N6 1575 aa14.45□□□□□ -0.1
UFD1-205ENST00000459854 NESP48681 1621 aa14.41□□□□□ -0.1
UFD1-205ENST00000459854 ABCC8Q09428 1581 aa14.41□□□□□ -0.1
UFD1-205ENST00000459854 EHMT2Q96KQ7 1210 aa14.4□□□□□ -0.1
UFD1-205ENST00000459854 UBTFP17480 764 aaKnown RBP14.34□□□□□ -0.11
UFD1-205ENST00000459854 FBLN2P98095 1184 aa14.33□□□□□ -0.12
UFD1-205ENST00000459854 MRC2Q9UBG0 1479 aa14.32□□□□□ -0.12
UFD1-205ENST00000459854 TRIM26Q12899 539 aaPredicted RBP14.27□□□□□ -0.12
UFD1-205ENST00000459854 SOGA1O94964 1423 aa14.27□□□□□ -0.13
UFD1-205ENST00000459854 KIF27Q86VH2 1401 aa14.24□□□□□ -0.13
UFD1-205ENST00000459854 CSRNP3Q8WYN3 585 aa14.23□□□□□ -0.13
UFD1-205ENST00000459854 CHMP7Q8WUX9 453 aaPredicted RBP14.22□□□□□ -0.13
UFD1-205ENST00000459854 DAXXQ9UER7 740 aaPredicted RBP14.22□□□□□ -0.13
UFD1-205ENST00000459854 RANGAP1P46060 587 aaPredicted RBP14.21□□□□□ -0.13
UFD1-205ENST00000459854 EEA1Q15075 1411 aa14.19□□□□□ -0.14
UFD1-205ENST00000459854 CUX2O14529 1486 aa14.18□□□□□ -0.14
UFD1-205ENST00000459854 TOPBP1Q92547 1522 aa14.17□□□□□ -0.14
UFD1-205ENST00000459854 DNMBPQ6XZF7 1577 aa14.16□□□□□ -0.14
UFD1-205ENST00000459854 FGD5Q6ZNL6 1462 aa14.16□□□□□ -0.14
UFD1-205ENST00000459854 RTL5Q5HYW3 569 aaPredicted RBP14.15□□□□□ -0.14
UFD1-205ENST00000459854 TDRD9Q8NDG6 1382 aaKnown RBP14.14□□□□□ -0.15
UFD1-205ENST00000459854 IFT140Q96RY7 1462 aa14.14□□□□□ -0.15
UFD1-205ENST00000459854 URB2Q14146 1524 aaKnown RBP14.08□□□□□ -0.16
UFD1-205ENST00000459854 CUX1P39880 1505 aa14.08□□□□□ -0.16
UFD1-205ENST00000459854 POLA1P09884 1462 aaPredicted RBP14.07□□□□□ -0.16
UFD1-205ENST00000459854 RAD54L2Q9Y4B4 1467 aa14.06□□□□□ -0.16
UFD1-205ENST00000459854 ATP1B4Q9UN42 357 aaPredicted RBP14.06□□□□□ -0.16
UFD1-205ENST00000459854 TOP2BQ02880 1626 aa14.06□□□□□ -0.16
UFD1-205ENST00000459854 KIF21AQ7Z4S6 1674 aa14.05□□□□□ -0.16
UFD1-205ENST00000459854 PRDM2Q13029 1718 aa14.05□□□□□ -0.16
UFD1-205ENST00000459854 GAPVD1Q14C86 1478 aa14.03□□□□□ -0.16
UFD1-205ENST00000459854 CARMIL1Q5VZK9 1371 aa14.03□□□□□ -0.16
UFD1-205ENST00000459854 SYNJ1O43426 1573 aa14.02□□□□□ -0.16
UFD1-205ENST00000459854 WDR62O43379 1518 aa14.01□□□□□ -0.17
UFD1-205ENST00000459854 AQRO60306 1485 aaKnown RBP eCLIP13.99□□□□□ -0.171e-7■■■■■ 26.8
UFD1-205ENST00000459854 GRIN2BQ13224 1484 aa13.99□□□□□ -0.17
UFD1-205ENST00000459854 LOC105371045A0A1W2PR82 267 aa13.97□□□□□ -0.17
UFD1-205ENST00000459854 ABCA10Q8WWZ4 1543 aa13.95□□□□□ -0.18
UFD1-205ENST00000459854 MYT1LQ9UL68 1186 aa13.95□□□□□ -0.18
UFD1-205ENST00000459854 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.95□□□□□ -0.18
UFD1-205ENST00000459854 HNRNPUL2Q1KMD3 747 aaKnown RBP13.95□□□□□ -0.18
UFD1-205ENST00000459854 OSCARQ8IYS5 282 aa13.94□□□□□ -0.18
UFD1-205ENST00000459854 GOLGA3Q08378 1498 aa13.94□□□□□ -0.18
UFD1-205ENST00000459854 CLSPNQ9HAW4 1339 aa13.93□□□□□ -0.18
UFD1-205ENST00000459854 BIVM-ERCC5R4GMW8 1640 aa13.93□□□□□ -0.18
UFD1-205ENST00000459854 FHAD1B1AJZ9 1412 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms