RNA–Protein interactions for RNA: ENST00000458362.5

CRAT-207, Transcript of carnitine O-acetyltransferase, humanhuman

TSL 1 (best)

Gene CRAT, Length 2,253 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRAT-207ENST00000458362 NISCHQ9Y2I1 1504 aa43.2■■■■■ 4.51
CRAT-207ENST00000458362 CCDC180Q9P1Z9 1646 aa36.9■■■■□ 3.5
CRAT-207ENST00000458362 SHROOM4Q9ULL8 1493 aa36.72■■■■□ 3.47
CRAT-207ENST00000458362 ZCCHC6Q5VYS8 1495 aaKnown RBP36.55■■■■□ 3.44
CRAT-207ENST00000458362 SUPT5HO00267 1087 aaKnown RBP35.95■■■■□ 3.35
CRAT-207ENST00000458362 DCAF8L2P0C7V8 631 aa35.66■■■■□ 3.3
CRAT-207ENST00000458362 DCAF1Q9Y4B6 1507 aa35.59■■■■□ 3.29
CRAT-207ENST00000458362 CHIC1Q5VXU3 224 aa35.01■■■■□ 3.2
CRAT-207ENST00000458362 MYO15BQ96JP2 1530 aa34.94■■■■□ 3.18
CRAT-207ENST00000458362 ABCC9O60706 1549 aa34.5■■■■□ 3.11
CRAT-207ENST00000458362 SCRIBQ14160 1630 aa34.45■■■■□ 3.11
CRAT-207ENST00000458362 RSF1Q96T23 1441 aaPredicted RBP34.16■■■■□ 3.06
CRAT-207ENST00000458362 NACADO15069 1562 aa34.12■■■■□ 3.05
CRAT-207ENST00000458362 LOC105371045A0A1W2PR82 267 aa33.95■■■■□ 3.02
CRAT-207ENST00000458362 HRCP23327 699 aa33.85■■■■□ 3.01
CRAT-207ENST00000458362 RB1CC1Q8TDY2 1594 aa33.83■■■■□ 3.01
CRAT-207ENST00000458362 PCGF6Q9BYE7 350 aa33.82■■■■□ 3
CRAT-207ENST00000458362 CECR2Q9BXF3 1484 aa33.7■■■□□ 2.99
CRAT-207ENST00000458362 MROH2BQ7Z745 1585 aa33.6■■■□□ 2.97
CRAT-207ENST00000458362 TRIM41Q8WV44 630 aa33.49■■■□□ 2.95
CRAT-207ENST00000458362 WIZO95785 1651 aa33.44■■■□□ 2.94
CRAT-207ENST00000458362 BAZ1AQ9NRL2 1556 aaPredicted RBP33.22■■■□□ 2.91
CRAT-207ENST00000458362 FAM9AQ8IZU1 332 aaPredicted RBP33.22■■■□□ 2.91
CRAT-207ENST00000458362 TRIM26Q12899 539 aaPredicted RBP33.21■■■□□ 2.91
CRAT-207ENST00000458362 PPARGC1BQ86YN6 1023 aaKnown RBP33.16■■■□□ 2.9
CRAT-207ENST00000458362 UNC13AQ9UPW8 1703 aa33.04■■■□□ 2.88
CRAT-207ENST00000458362 EIF4G1Q04637 1599 aaKnown RBP33.03■■■□□ 2.88
CRAT-207ENST00000458362 SMARCA4P51532 1647 aa32.94■■■□□ 2.86
CRAT-207ENST00000458362 EHMT2Q96KQ7 1210 aa32.91■■■□□ 2.86
CRAT-207ENST00000458362 TOP2AP11388 1531 aaKnown RBP32.9■■■□□ 2.86
CRAT-207ENST00000458362 CCDC88BA6NC98 1476 aa32.73■■■□□ 2.83
CRAT-207ENST00000458362 SMARCA2P51531 1590 aa32.73■■■□□ 2.83
CRAT-207ENST00000458362 ABCC8Q09428 1581 aa32.65■■■□□ 2.82
CRAT-207ENST00000458362 BICRAQ9NZM4 1560 aa32.62■■■□□ 2.81
CRAT-207ENST00000458362 PABPN1Q86U42 306 aaKnown RBP eCLIP32.5■■■□□ 2.79
CRAT-207ENST00000458362 ZEB1P37275 1124 aaPredicted RBP32.43■■■□□ 2.78
CRAT-207ENST00000458362 PEG3Q9GZU2 1588 aa32.4■■■□□ 2.78
CRAT-207ENST00000458362 SOGA1O94964 1423 aa32.3■■■□□ 2.76
CRAT-207ENST00000458362 RUSC2Q8N2Y8 1516 aa32.18■■■□□ 2.74
CRAT-207ENST00000458362 CEP162Q5TB80 1403 aa32.13■■■□□ 2.73
CRAT-207ENST00000458362 EEA1Q15075 1411 aa32.12■■■□□ 2.73
CRAT-207ENST00000458362 WRNQ14191 1432 aaPredicted RBP eCLIP32.11■■■□□ 2.73
CRAT-207ENST00000458362 TNIKQ9UKE5 1360 aa32.09■■■□□ 2.73
CRAT-207ENST00000458362 CSRNP3Q8WYN3 585 aa32.07■■■□□ 2.73
CRAT-207ENST00000458362 ATAD2BQ9ULI0 1458 aa32.06■■■□□ 2.72
CRAT-207ENST00000458362 SYNJ1O43426 1573 aa31.98■■■□□ 2.71
CRAT-207ENST00000458362 BAZ1BQ9UIG0 1483 aaKnown RBP31.95■■■□□ 2.71
CRAT-207ENST00000458362 GOLGA3Q08378 1498 aa31.92■■■□□ 2.7
CRAT-207ENST00000458362 UBTFP17480 764 aaKnown RBP31.9■■■□□ 2.7
CRAT-207ENST00000458362 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.89■■■□□ 2.7
CRAT-207ENST00000458362 TTBK1Q5TCY1 1321 aaPredicted RBP31.86■■■□□ 2.69
CRAT-207ENST00000458362 CCER1Q8TC90 406 aaPredicted RBP31.78■■■□□ 2.68
CRAT-207ENST00000458362 KIF21BO75037 1637 aa31.75■■■□□ 2.67
CRAT-207ENST00000458362 CEP164Q9UPV0 1460 aa31.73■■■□□ 2.67
CRAT-207ENST00000458362 TOP2BQ02880 1626 aa31.58■■■□□ 2.65
CRAT-207ENST00000458362 NCAPD3P42695 1498 aa31.55■■■□□ 2.64
CRAT-207ENST00000458362 HMGXB3Q12766 1538 aa31.55■■■□□ 2.64
CRAT-207ENST00000458362 CLIP1P30622 1438 aa31.54■■■□□ 2.64
CRAT-207ENST00000458362 RAPGEF2Q9Y4G8 1499 aa31.53■■■□□ 2.64
CRAT-207ENST00000458362 BIVM-ERCC5R4GMW8 1640 aa31.49■■■□□ 2.63
CRAT-207ENST00000458362 VPS8Q8N3P4 1428 aa31.41■■■□□ 2.62
CRAT-207ENST00000458362 CUX1P39880 1505 aa31.28■■■□□ 2.6
CRAT-207ENST00000458362 RANGAP1P46060 587 aaPredicted RBP31.26■■■□□ 2.59
CRAT-207ENST00000458362 PRXQ9BXM0 1461 aa31.24■■■□□ 2.59
CRAT-207ENST00000458362 ERICH3Q5RHP9 1530 aa31.23■■■□□ 2.59
CRAT-207ENST00000458362 CFTRP13569 1480 aa31.22■■■□□ 2.59
CRAT-207ENST00000458362 HNRNPUL2Q1KMD3 747 aaKnown RBP31.19■■■□□ 2.58
CRAT-207ENST00000458362 SCAF1Q9H7N4 1312 aaKnown RBP31.16■■■□□ 2.58
CRAT-207ENST00000458362 APLP2Q06481 763 aa31.14■■■□□ 2.58
CRAT-207ENST00000458362 DIEXFQ68CQ4 756 aaKnown RBP31.14■■■□□ 2.58
CRAT-207ENST00000458362 ARAP1Q96P48 1450 aa31.09■■■□□ 2.57
CRAT-207ENST00000458362 KIF27Q86VH2 1401 aa31.05■■■□□ 2.56
CRAT-207ENST00000458362 PRDM2Q13029 1718 aa31.03■■■□□ 2.56
CRAT-207ENST00000458362 ZNF316A6NFI3 1004 aaPredicted RBP30.95■■■□□ 2.54
CRAT-207ENST00000458362 ACIN1Q9UKV3 1341 aaKnown RBP30.87■■■□□ 2.53
CRAT-207ENST00000458362 KANK4Q5T7N3 995 aaPredicted RBP30.86■■■□□ 2.53
CRAT-207ENST00000458362 CADPSQ9ULU8 1353 aa30.86■■■□□ 2.53
CRAT-207ENST00000458362 NEUROD1Q13562 356 aa30.85■■■□□ 2.53
CRAT-207ENST00000458362 ARHGAP35Q9NRY4 1499 aa30.81■■■□□ 2.52
CRAT-207ENST00000458362 CUX2O14529 1486 aa30.79■■■□□ 2.52
CRAT-207ENST00000458362 IGF1RP08069 1367 aa30.74■■■□□ 2.51
CRAT-207ENST00000458362 CC2D2AQ9P2K1 1620 aa30.73■■■□□ 2.51
CRAT-207ENST00000458362 FGD5Q6ZNL6 1462 aa30.7■■■□□ 2.51
CRAT-207ENST00000458362 RRBP1Q9P2E9 1410 aaKnown RBP30.68■■■□□ 2.5
CRAT-207ENST00000458362 DHX57Q6P158 1386 aaKnown RBP30.65■■■□□ 2.5
CRAT-207ENST00000458362 CENPBP07199 599 aaPredicted RBP30.64■■■□□ 2.5
CRAT-207ENST00000458362 CARMIL1Q5VZK9 1371 aa30.59■■■□□ 2.49
CRAT-207ENST00000458362 CLSPNQ9HAW4 1339 aa30.55■■■□□ 2.48
CRAT-207ENST00000458362 FANCD2Q9BXW9 1451 aa30.53■■■□□ 2.48
CRAT-207ENST00000458362 CCNB3Q8WWL7 1395 aa30.52■■■□□ 2.48
CRAT-207ENST00000458362 MIER1Q8N108 512 aa30.52■■■□□ 2.48
CRAT-207ENST00000458362 GTF3C3Q9Y5Q9 886 aa30.49■■■□□ 2.47
CRAT-207ENST00000458362 TIAM1Q13009 1591 aa30.48■■■□□ 2.47
CRAT-207ENST00000458362 MAP3K1Q13233 1512 aa30.44■■■□□ 2.46
CRAT-207ENST00000458362 DNMBPQ6XZF7 1577 aa30.42■■■□□ 2.46
CRAT-207ENST00000458362 RAD54L2Q9Y4B4 1467 aa30.39■■■□□ 2.46
CRAT-207ENST00000458362 YTHDC1Q96MU7 727 aaKnown RBP30.38■■■□□ 2.45
CRAT-207ENST00000458362 ITGAEP38570 1179 aa30.36■■■□□ 2.45
CRAT-207ENST00000458362 NESP48681 1621 aa30.35■■■□□ 2.45
CRAT-207ENST00000458362 TOPBP1Q92547 1522 aa30.35■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms