RNA–Protein interactions for RNA: ENST00000455551.6

SEMA4D-213, Transcript of semaphorin 4D, humanhuman

TSL 5 BASIC

Gene SEMA4D, Length 3,594 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-213ENST00000455551 NISCHQ9Y2I1 1504 aa25.55■■□□□ 1.68
SEMA4D-213ENST00000455551 SHROOM4Q9ULL8 1493 aa21.9■■□□□ 1.1
SEMA4D-213ENST00000455551 CCDC180Q9P1Z9 1646 aa21.71■■□□□ 1.07
SEMA4D-213ENST00000455551 ZCCHC6Q5VYS8 1495 aaKnown RBP21.59■■□□□ 1.05
SEMA4D-213ENST00000455551 SUPT5HO00267 1087 aaKnown RBP21.42■■□□□ 1.02
SEMA4D-213ENST00000455551 DCAF8L2P0C7V8 631 aa21.41■■□□□ 1.02
SEMA4D-213ENST00000455551 DCAF1Q9Y4B6 1507 aa20.88■□□□□ 0.93
SEMA4D-213ENST00000455551 CHIC1Q5VXU3 224 aa20.7■□□□□ 0.9
SEMA4D-213ENST00000455551 MYO15BQ96JP2 1530 aa20.61■□□□□ 0.89
SEMA4D-213ENST00000455551 SCRIBQ14160 1630 aa20.47■□□□□ 0.87
SEMA4D-213ENST00000455551 ABCC9O60706 1549 aa20.36■□□□□ 0.85
SEMA4D-213ENST00000455551 RSF1Q96T23 1441 aaPredicted RBP20.22■□□□□ 0.83
SEMA4D-213ENST00000455551 LOC105371045A0A1W2PR82 267 aa20.15■□□□□ 0.82
SEMA4D-213ENST00000455551 NACADO15069 1562 aa20.11■□□□□ 0.81
SEMA4D-213ENST00000455551 PCGF6Q9BYE7 350 aa20.03■□□□□ 0.8
SEMA4D-213ENST00000455551 RB1CC1Q8TDY2 1594 aa20.02■□□□□ 0.8
SEMA4D-213ENST00000455551 CECR2Q9BXF3 1484 aa20■□□□□ 0.79
SEMA4D-213ENST00000455551 TRIM41Q8WV44 630 aa19.9■□□□□ 0.78
SEMA4D-213ENST00000455551 MROH2BQ7Z745 1585 aa19.9■□□□□ 0.78
SEMA4D-213ENST00000455551 HRCP23327 699 aa19.89■□□□□ 0.78
SEMA4D-213ENST00000455551 FAM9AQ8IZU1 332 aaPredicted RBP19.83■□□□□ 0.77
SEMA4D-213ENST00000455551 WIZO95785 1651 aa19.8■□□□□ 0.76
SEMA4D-213ENST00000455551 EHMT2Q96KQ7 1210 aa19.74■□□□□ 0.75
SEMA4D-213ENST00000455551 BAZ1AQ9NRL2 1556 aaPredicted RBP19.63■□□□□ 0.73
SEMA4D-213ENST00000455551 PPARGC1BQ86YN6 1023 aaKnown RBP19.6■□□□□ 0.73
SEMA4D-213ENST00000455551 TRIM26Q12899 539 aaPredicted RBP19.59■□□□□ 0.73
SEMA4D-213ENST00000455551 UNC13AQ9UPW8 1703 aa19.55■□□□□ 0.72
SEMA4D-213ENST00000455551 SMARCA4P51532 1647 aa19.49■□□□□ 0.71
SEMA4D-213ENST00000455551 PABPN1Q86U42 306 aaKnown RBP eCLIP19.48■□□□□ 0.71
SEMA4D-213ENST00000455551 TOP2AP11388 1531 aaKnown RBP19.44■□□□□ 0.7
SEMA4D-213ENST00000455551 EIF4G1Q04637 1599 aaKnown RBP19.42■□□□□ 0.7
SEMA4D-213ENST00000455551 CCDC88BA6NC98 1476 aa19.39■□□□□ 0.69
SEMA4D-213ENST00000455551 ABCC8Q09428 1581 aa19.36■□□□□ 0.69
SEMA4D-213ENST00000455551 SMARCA2P51531 1590 aa19.35■□□□□ 0.69
SEMA4D-213ENST00000455551 BICRAQ9NZM4 1560 aa19.31■□□□□ 0.68
SEMA4D-213ENST00000455551 SOGA1O94964 1423 aa19.15■□□□□ 0.66
SEMA4D-213ENST00000455551 ZEB1P37275 1124 aaPredicted RBP19.08■□□□□ 0.64
SEMA4D-213ENST00000455551 RUSC2Q8N2Y8 1516 aa19.07■□□□□ 0.64
SEMA4D-213ENST00000455551 TTBK1Q5TCY1 1321 aaPredicted RBP19.07■□□□□ 0.64
SEMA4D-213ENST00000455551 PEG3Q9GZU2 1588 aa19.05■□□□□ 0.64
SEMA4D-213ENST00000455551 CSRNP3Q8WYN3 585 aa19.02■□□□□ 0.64
SEMA4D-213ENST00000455551 ATAD2BQ9ULI0 1458 aa19.02■□□□□ 0.64
SEMA4D-213ENST00000455551 WRNQ14191 1432 aaPredicted RBP eCLIP19.01■□□□□ 0.63
SEMA4D-213ENST00000455551 CEP162Q5TB80 1403 aa19.01■□□□□ 0.63
SEMA4D-213ENST00000455551 UBTFP17480 764 aaKnown RBP19.01■□□□□ 0.63
SEMA4D-213ENST00000455551 BAZ1BQ9UIG0 1483 aaKnown RBP18.99■□□□□ 0.63
SEMA4D-213ENST00000455551 EEA1Q15075 1411 aa18.95■□□□□ 0.62
SEMA4D-213ENST00000455551 TNIKQ9UKE5 1360 aa18.94■□□□□ 0.62
SEMA4D-213ENST00000455551 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.92■□□□□ 0.62
SEMA4D-213ENST00000455551 SYNJ1O43426 1573 aa18.92■□□□□ 0.62
SEMA4D-213ENST00000455551 GOLGA3Q08378 1498 aa18.87■□□□□ 0.61
SEMA4D-213ENST00000455551 CCER1Q8TC90 406 aaPredicted RBP18.84■□□□□ 0.61
SEMA4D-213ENST00000455551 CEP164Q9UPV0 1460 aa18.76■□□□□ 0.59
SEMA4D-213ENST00000455551 RANGAP1P46060 587 aaPredicted RBP18.75■□□□□ 0.59
SEMA4D-213ENST00000455551 KIF21BO75037 1637 aa18.7■□□□□ 0.58
SEMA4D-213ENST00000455551 RAPGEF2Q9Y4G8 1499 aa18.68■□□□□ 0.58
SEMA4D-213ENST00000455551 CLIP1P30622 1438 aa18.68■□□□□ 0.58
SEMA4D-213ENST00000455551 TOP2BQ02880 1626 aa18.65■□□□□ 0.58
SEMA4D-213ENST00000455551 NCAPD3P42695 1498 aa18.63■□□□□ 0.57
SEMA4D-213ENST00000455551 HMGXB3Q12766 1538 aa18.61■□□□□ 0.57
SEMA4D-213ENST00000455551 BIVM-ERCC5R4GMW8 1640 aa18.57■□□□□ 0.56
SEMA4D-213ENST00000455551 HNRNPUL2Q1KMD3 747 aaKnown RBP18.56■□□□□ 0.56
SEMA4D-213ENST00000455551 VPS8Q8N3P4 1428 aa18.56■□□□□ 0.56
SEMA4D-213ENST00000455551 APLP2Q06481 763 aa18.54■□□□□ 0.56
SEMA4D-213ENST00000455551 CUX1P39880 1505 aa18.53■□□□□ 0.56
SEMA4D-213ENST00000455551 CFTRP13569 1480 aa18.47■□□□□ 0.55
SEMA4D-213ENST00000455551 PRXQ9BXM0 1461 aa18.45■□□□□ 0.54
SEMA4D-213ENST00000455551 KIF27Q86VH2 1401 aa18.42■□□□□ 0.54
SEMA4D-213ENST00000455551 ERICH3Q5RHP9 1530 aa18.41■□□□□ 0.54
SEMA4D-213ENST00000455551 DIEXFQ68CQ4 756 aaKnown RBP18.39■□□□□ 0.53
SEMA4D-213ENST00000455551 ARAP1Q96P48 1450 aa18.37■□□□□ 0.53
SEMA4D-213ENST00000455551 KANK4Q5T7N3 995 aaPredicted RBP18.31■□□□□ 0.52
SEMA4D-213ENST00000455551 CADPSQ9ULU8 1353 aa18.31■□□□□ 0.52
SEMA4D-213ENST00000455551 CUX2O14529 1486 aa18.3■□□□□ 0.52
SEMA4D-213ENST00000455551 SCAF1Q9H7N4 1312 aaKnown RBP18.3■□□□□ 0.52
SEMA4D-213ENST00000455551 PRDM2Q13029 1718 aa18.27■□□□□ 0.52
SEMA4D-213ENST00000455551 CC2D2AQ9P2K1 1620 aa18.26■□□□□ 0.51
SEMA4D-213ENST00000455551 ZNF316A6NFI3 1004 aaPredicted RBP18.25■□□□□ 0.51
SEMA4D-213ENST00000455551 FGD5Q6ZNL6 1462 aa18.23■□□□□ 0.51
SEMA4D-213ENST00000455551 ARHGAP35Q9NRY4 1499 aa18.23■□□□□ 0.51
SEMA4D-213ENST00000455551 IGF1RP08069 1367 aa18.23■□□□□ 0.51
SEMA4D-213ENST00000455551 CARMIL1Q5VZK9 1371 aa18.17■□□□□ 0.5
SEMA4D-213ENST00000455551 NEUROD1Q13562 356 aa18.16■□□□□ 0.5
SEMA4D-213ENST00000455551 FANCD2Q9BXW9 1451 aa18.15■□□□□ 0.5
SEMA4D-213ENST00000455551 ACIN1Q9UKV3 1341 aaKnown RBP18.14■□□□□ 0.49
SEMA4D-213ENST00000455551 ITGAEP38570 1179 aa18.14■□□□□ 0.49
SEMA4D-213ENST00000455551 NESP48681 1621 aa18.1■□□□□ 0.49
SEMA4D-213ENST00000455551 P3H3Q8IVL6 736 aa18.1■□□□□ 0.49
SEMA4D-213ENST00000455551 RAD54L2Q9Y4B4 1467 aa18.09■□□□□ 0.49
SEMA4D-213ENST00000455551 DHX57Q6P158 1386 aaKnown RBP18.08■□□□□ 0.49
SEMA4D-213ENST00000455551 RRBP1Q9P2E9 1410 aaKnown RBP18.08■□□□□ 0.48
SEMA4D-213ENST00000455551 CCNB3Q8WWL7 1395 aa18.06■□□□□ 0.48
SEMA4D-213ENST00000455551 CENPBP07199 599 aaPredicted RBP18.06■□□□□ 0.48
SEMA4D-213ENST00000455551 ATP1B4Q9UN42 357 aaPredicted RBP18.05■□□□□ 0.48
SEMA4D-213ENST00000455551 YTHDC1Q96MU7 727 aaKnown RBP18.04■□□□□ 0.48
SEMA4D-213ENST00000455551 MIER1Q8N108 512 aa18.02■□□□□ 0.47
SEMA4D-213ENST00000455551 DNMBPQ6XZF7 1577 aa18.02■□□□□ 0.47
SEMA4D-213ENST00000455551 POLA1P09884 1462 aaPredicted RBP18.01■□□□□ 0.47
SEMA4D-213ENST00000455551 TOPBP1Q92547 1522 aa18.01■□□□□ 0.47
SEMA4D-213ENST00000455551 TIAM1Q13009 1591 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms