RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 CHIC1Q5VXU3 224 aa23.84■■□□□ 1.41
VIPAS39-203ENST00000448935 NISCHQ9Y2I1 1504 aa23.52■■□□□ 1.36
VIPAS39-203ENST00000448935 AEBP2Q6ZN18 517 aaPredicted RBP23.41■■□□□ 1.34
VIPAS39-203ENST00000448935 PHF23Q9BUL5 403 aaPredicted RBP21.07■□□□□ 0.96
VIPAS39-203ENST00000448935 CCDC180Q9P1Z9 1646 aa20.51■□□□□ 0.87
VIPAS39-203ENST00000448935 PLPPR3Q6T4P5 718 aa19.81■□□□□ 0.76
VIPAS39-203ENST00000448935 ZCCHC6Q5VYS8 1495 aaKnown RBP19.79■□□□□ 0.76
VIPAS39-203ENST00000448935 SENP3Q9H4L4 574 aaPredicted RBP19.73■□□□□ 0.75
VIPAS39-203ENST00000448935 DCAF1Q9Y4B6 1507 aa19.51■□□□□ 0.71
VIPAS39-203ENST00000448935 DCAF8L2P0C7V8 631 aa19.32■□□□□ 0.68
VIPAS39-203ENST00000448935 MYO15BQ96JP2 1530 aa19.23■□□□□ 0.67
VIPAS39-203ENST00000448935 SHROOM4Q9ULL8 1493 aa19.19■□□□□ 0.66
VIPAS39-203ENST00000448935 ABCC9O60706 1549 aa19.14■□□□□ 0.65
VIPAS39-203ENST00000448935 NACADO15069 1562 aa19.05■□□□□ 0.64
VIPAS39-203ENST00000448935 RB1CC1Q8TDY2 1594 aa18.85■□□□□ 0.61
VIPAS39-203ENST00000448935 SCRIBQ14160 1630 aa18.79■□□□□ 0.6
VIPAS39-203ENST00000448935 SUPT5HO00267 1087 aaKnown RBP18.57■□□□□ 0.56
VIPAS39-203ENST00000448935 ADRA2BP18089 450 aa18.51■□□□□ 0.55
VIPAS39-203ENST00000448935 UNC13AQ9UPW8 1703 aa18.44■□□□□ 0.54
VIPAS39-203ENST00000448935 KCNA4P22459 653 aa18.31■□□□□ 0.52
VIPAS39-203ENST00000448935 RSF1Q96T23 1441 aaPredicted RBP18.27■□□□□ 0.51
VIPAS39-203ENST00000448935 EHMT2Q96KQ7 1210 aa18.26■□□□□ 0.51
VIPAS39-203ENST00000448935 PPP6R1Q9UPN7 881 aa18.26■□□□□ 0.51
VIPAS39-203ENST00000448935 BICRAQ9NZM4 1560 aa18.2■□□□□ 0.5
VIPAS39-203ENST00000448935 BAZ1AQ9NRL2 1556 aaPredicted RBP18.19■□□□□ 0.5
VIPAS39-203ENST00000448935 CECR2Q9BXF3 1484 aa18.19■□□□□ 0.5
VIPAS39-203ENST00000448935 FOXD1Q16676 465 aa18.17■□□□□ 0.5
VIPAS39-203ENST00000448935 MROH2BQ7Z745 1585 aa18.13■□□□□ 0.49
VIPAS39-203ENST00000448935 SMARCA4P51532 1647 aa18.06■□□□□ 0.48
VIPAS39-203ENST00000448935 PABPN1Q86U42 306 aaKnown RBP eCLIP18.04■□□□□ 0.48
VIPAS39-203ENST00000448935 WIZO95785 1651 aa18.01■□□□□ 0.47
VIPAS39-203ENST00000448935 TOP2AP11388 1531 aaKnown RBP17.87■□□□□ 0.45
VIPAS39-203ENST00000448935 PEG3Q9GZU2 1588 aa17.85■□□□□ 0.45
VIPAS39-203ENST00000448935 DNAJC5BQ9UF47 199 aa17.84■□□□□ 0.45
VIPAS39-203ENST00000448935 SMARCA2P51531 1590 aa17.76■□□□□ 0.43
VIPAS39-203ENST00000448935 ATAD2BQ9ULI0 1458 aa17.7■□□□□ 0.42
VIPAS39-203ENST00000448935 EIF4G1Q04637 1599 aaKnown RBP17.67■□□□□ 0.42
VIPAS39-203ENST00000448935 CCDC88BA6NC98 1476 aa17.65■□□□□ 0.42
VIPAS39-203ENST00000448935 BAZ1BQ9UIG0 1483 aaKnown RBP17.63■□□□□ 0.41
VIPAS39-203ENST00000448935 SLC4A1APQ9BWU0 796 aaKnown RBP17.61■□□□□ 0.41
VIPAS39-203ENST00000448935 PPP4R3CPQ6ZMV5 832 aa17.57■□□□□ 0.4
VIPAS39-203ENST00000448935 CSRNP3Q8WYN3 585 aa17.57■□□□□ 0.4
VIPAS39-203ENST00000448935 HMGXB3Q12766 1538 aa17.56■□□□□ 0.4
VIPAS39-203ENST00000448935 NCAPD3P42695 1498 aa17.55■□□□□ 0.4
VIPAS39-203ENST00000448935 TRIM41Q8WV44 630 aa17.51■□□□□ 0.39
VIPAS39-203ENST00000448935 PIAS4Q8N2W9 510 aaPredicted RBP17.41■□□□□ 0.38
VIPAS39-203ENST00000448935 NCBP3Q53F19 620 aaKnown RBP17.4■□□□□ 0.38
VIPAS39-203ENST00000448935 CC2D2AQ9P2K1 1620 aa17.36■□□□□ 0.37
VIPAS39-203ENST00000448935 ABCC8Q09428 1581 aa17.3■□□□□ 0.36
VIPAS39-203ENST00000448935 WRNQ14191 1432 aaPredicted RBP eCLIP17.23■□□□□ 0.35
VIPAS39-203ENST00000448935 PRDM2Q13029 1718 aa17.2■□□□□ 0.34
VIPAS39-203ENST00000448935 CFTRP13569 1480 aa17.19■□□□□ 0.34
VIPAS39-203ENST00000448935 NPM3O75607 178 aaKnown RBP17.14■□□□□ 0.33
VIPAS39-203ENST00000448935 EEA1Q15075 1411 aa17.14■□□□□ 0.33
VIPAS39-203ENST00000448935 LOC105371045A0A1W2PR82 267 aa17.14■□□□□ 0.33
VIPAS39-203ENST00000448935 SYNJ1O43426 1573 aa17.12■□□□□ 0.33
VIPAS39-203ENST00000448935 FAM9AQ8IZU1 332 aaPredicted RBP17.11■□□□□ 0.33
VIPAS39-203ENST00000448935 CADPSQ9ULU8 1353 aa17.1■□□□□ 0.33
VIPAS39-203ENST00000448935 TOP2BQ02880 1626 aa17.09■□□□□ 0.33
VIPAS39-203ENST00000448935 BIVM-ERCC5R4GMW8 1640 aa17.08■□□□□ 0.33
VIPAS39-203ENST00000448935 SOGA1O94964 1423 aa17■□□□□ 0.31
VIPAS39-203ENST00000448935 LAMC3Q9Y6N6 1575 aa16.97■□□□□ 0.31
VIPAS39-203ENST00000448935 CUX1P39880 1505 aa16.96■□□□□ 0.31
VIPAS39-203ENST00000448935 FANCD2Q9BXW9 1451 aa16.91■□□□□ 0.3
VIPAS39-203ENST00000448935 RUSC2Q8N2Y8 1516 aa16.9■□□□□ 0.3
VIPAS39-203ENST00000448935 KIF21BO75037 1637 aa16.87■□□□□ 0.29
VIPAS39-203ENST00000448935 ZBTB22O15209 634 aa16.86■□□□□ 0.29
VIPAS39-203ENST00000448935 CNKSR2Q8WXI2 1034 aa16.86■□□□□ 0.29
VIPAS39-203ENST00000448935 GOLGA3Q08378 1498 aa16.86■□□□□ 0.29
VIPAS39-203ENST00000448935 CEP164Q9UPV0 1460 aa16.85■□□□□ 0.29
VIPAS39-203ENST00000448935 NESP48681 1621 aa16.82■□□□□ 0.28
VIPAS39-203ENST00000448935 TNIKQ9UKE5 1360 aa16.82■□□□□ 0.28
VIPAS39-203ENST00000448935 PDS5BQ9NTI5 1447 aa16.82■□□□□ 0.28
VIPAS39-203ENST00000448935 DNMBPQ6XZF7 1577 aa16.81■□□□□ 0.28
VIPAS39-203ENST00000448935 KIF27Q86VH2 1401 aa16.81■□□□□ 0.28
VIPAS39-203ENST00000448935 FGD5Q6ZNL6 1462 aa16.77■□□□□ 0.27
VIPAS39-203ENST00000448935 SCAF1Q9H7N4 1312 aaKnown RBP16.75■□□□□ 0.27
VIPAS39-203ENST00000448935 UBTFP17480 764 aaKnown RBP16.74■□□□□ 0.27
VIPAS39-203ENST00000448935 TOPBP1Q92547 1522 aa16.74■□□□□ 0.27
VIPAS39-203ENST00000448935 ERICH3Q5RHP9 1530 aa16.73■□□□□ 0.27
VIPAS39-203ENST00000448935 CEP162Q5TB80 1403 aa16.72■□□□□ 0.27
VIPAS39-203ENST00000448935 KIF21AQ7Z4S6 1674 aa16.69■□□□□ 0.26
VIPAS39-203ENST00000448935 PRXQ9BXM0 1461 aa16.69■□□□□ 0.26
VIPAS39-203ENST00000448935 CUX2O14529 1486 aa16.68■□□□□ 0.26
VIPAS39-203ENST00000448935 DNAJC5Q9H3Z4 198 aa16.67■□□□□ 0.26
VIPAS39-203ENST00000448935 RAPGEF2Q9Y4G8 1499 aa16.66■□□□□ 0.26
VIPAS39-203ENST00000448935 POLA1P09884 1462 aaPredicted RBP16.66■□□□□ 0.26
VIPAS39-203ENST00000448935 URB2Q14146 1524 aaKnown RBP16.66■□□□□ 0.26
VIPAS39-203ENST00000448935 ABCA10Q8WWZ4 1543 aa16.64■□□□□ 0.25
VIPAS39-203ENST00000448935 TRIM26Q12899 539 aaPredicted RBP16.6■□□□□ 0.25
VIPAS39-203ENST00000448935 WDR97A6NE52 1622 aa16.58■□□□□ 0.25
VIPAS39-203ENST00000448935 IGF1RP08069 1367 aa16.58■□□□□ 0.24
VIPAS39-203ENST00000448935 MRC2Q9UBG0 1479 aa16.57■□□□□ 0.24
VIPAS39-203ENST00000448935 RAD54L2Q9Y4B4 1467 aa16.57■□□□□ 0.24
VIPAS39-203ENST00000448935 CLIP1P30622 1438 aa16.57■□□□□ 0.24
VIPAS39-203ENST00000448935 FOXD4L1Q9NU39 408 aa16.56■□□□□ 0.24
VIPAS39-203ENST00000448935 PCGF6Q9BYE7 350 aa16.56■□□□□ 0.24
VIPAS39-203ENST00000448935 CUL7Q14999 1698 aa16.53■□□□□ 0.24
VIPAS39-203ENST00000448935 CARMIL1Q5VZK9 1371 aa16.53■□□□□ 0.24
VIPAS39-203ENST00000448935 ABCA5Q8WWZ7 1642 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms