RNA–Protein interactions for RNA: ENST00000444457.5

PMPCB-204, Transcript of peptidase, mitochondrial processing beta subunit, humanhuman

TSL 2

Gene PMPCB, Length 2,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMPCB-204ENST00000444457 NISCHQ9Y2I1 1504 aa39.3■■■■□ 3.88
PMPCB-204ENST00000444457 CCDC180Q9P1Z9 1646 aa33.65■■■□□ 2.98
PMPCB-204ENST00000444457 ZCCHC6Q5VYS8 1495 aaKnown RBP33.24■■■□□ 2.91
PMPCB-204ENST00000444457 SHROOM4Q9ULL8 1493 aa33.12■■■□□ 2.89
PMPCB-204ENST00000444457 SUPT5HO00267 1087 aaKnown RBP32.38■■■□□ 2.77
PMPCB-204ENST00000444457 DCAF1Q9Y4B6 1507 aa32.36■■■□□ 2.77
PMPCB-204ENST00000444457 DCAF8L2P0C7V8 631 aa32.33■■■□□ 2.77
PMPCB-204ENST00000444457 HRCP23327 699 aa31.71■■■□□ 2.67
PMPCB-204ENST00000444457 MYO15BQ96JP2 1530 aa31.52■■■□□ 2.64
PMPCB-204ENST00000444457 CHIC1Q5VXU3 224 aa31.49■■■□□ 2.63
PMPCB-204ENST00000444457 ABCC9O60706 1549 aa31.47■■■□□ 2.63
PMPCB-204ENST00000444457 SCRIBQ14160 1630 aa31.33■■■□□ 2.61
PMPCB-204ENST00000444457 NACADO15069 1562 aa31.09■■■□□ 2.57
PMPCB-204ENST00000444457 RSF1Q96T23 1441 aaPredicted RBP30.97■■■□□ 2.55
PMPCB-204ENST00000444457 PCGF6Q9BYE7 350 aa30.89■■■□□ 2.54
PMPCB-204ENST00000444457 PPARGC1BQ86YN6 1023 aaKnown RBP30.83■■■□□ 2.53
PMPCB-204ENST00000444457 RB1CC1Q8TDY2 1594 aa30.68■■■□□ 2.5
PMPCB-204ENST00000444457 PELP1Q8IZL8 1130 aaKnown RBP30.65■■■□□ 2.5
PMPCB-204ENST00000444457 CECR2Q9BXF3 1484 aa30.58■■■□□ 2.49
PMPCB-204ENST00000444457 MROH2BQ7Z745 1585 aa30.49■■■□□ 2.47
PMPCB-204ENST00000444457 LOC105371045A0A1W2PR82 267 aa30.44■■■□□ 2.46
PMPCB-204ENST00000444457 WIZO95785 1651 aa30.35■■■□□ 2.45
PMPCB-204ENST00000444457 TRIM41Q8WV44 630 aa30.25■■■□□ 2.43
PMPCB-204ENST00000444457 BAZ1AQ9NRL2 1556 aaPredicted RBP30.23■■■□□ 2.43
PMPCB-204ENST00000444457 UNC13AQ9UPW8 1703 aa30.19■■■□□ 2.42
PMPCB-204ENST00000444457 TRIM26Q12899 539 aaPredicted RBP30.08■■■□□ 2.41
PMPCB-204ENST00000444457 SMARCA4P51532 1647 aa30■■■□□ 2.39
PMPCB-204ENST00000444457 EIF4G1Q04637 1599 aaKnown RBP29.95■■■□□ 2.38
PMPCB-204ENST00000444457 TOP2AP11388 1531 aaKnown RBP29.93■■■□□ 2.38
PMPCB-204ENST00000444457 ZEB1P37275 1124 aaPredicted RBP29.91■■■□□ 2.38
PMPCB-204ENST00000444457 SCAF1Q9H7N4 1312 aaKnown RBP29.91■■■□□ 2.38
PMPCB-204ENST00000444457 FAM9AQ8IZU1 332 aaPredicted RBP29.89■■■□□ 2.37
PMPCB-204ENST00000444457 BICRAQ9NZM4 1560 aa29.75■■■□□ 2.35
PMPCB-204ENST00000444457 PABPN1Q86U42 306 aaKnown RBP eCLIP29.75■■■□□ 2.35
PMPCB-204ENST00000444457 SMARCA2P51531 1590 aa29.73■■■□□ 2.35
PMPCB-204ENST00000444457 CCDC88BA6NC98 1476 aa29.71■■■□□ 2.35
PMPCB-204ENST00000444457 ABCC8Q09428 1581 aa29.55■■■□□ 2.32
PMPCB-204ENST00000444457 EHMT2Q96KQ7 1210 aa29.55■■■□□ 2.32
PMPCB-204ENST00000444457 MYT1Q01538 1121 aa29.5■■■□□ 2.31
PMPCB-204ENST00000444457 PEG3Q9GZU2 1588 aa29.5■■■□□ 2.31
PMPCB-204ENST00000444457 ACIN1Q9UKV3 1341 aaKnown RBP29.23■■■□□ 2.27
PMPCB-204ENST00000444457 ATAD2BQ9ULI0 1458 aa29.22■■■□□ 2.27
PMPCB-204ENST00000444457 SOGA1O94964 1423 aa29.19■■■□□ 2.26
PMPCB-204ENST00000444457 EEA1Q15075 1411 aa29.16■■■□□ 2.26
PMPCB-204ENST00000444457 BAZ1BQ9UIG0 1483 aaKnown RBP29.13■■■□□ 2.25
PMPCB-204ENST00000444457 WRNQ14191 1432 aaPredicted RBP eCLIP29.1■■■□□ 2.25
PMPCB-204ENST00000444457 NEUROD1Q13562 356 aa29.08■■■□□ 2.25
PMPCB-204ENST00000444457 RUSC2Q8N2Y8 1516 aa29.06■■■□□ 2.24
PMPCB-204ENST00000444457 CEP162Q5TB80 1403 aa29.02■■■□□ 2.24
PMPCB-204ENST00000444457 TNIKQ9UKE5 1360 aa29.02■■■□□ 2.24
PMPCB-204ENST00000444457 CSRNP3Q8WYN3 585 aa29.01■■■□□ 2.23
PMPCB-204ENST00000444457 SYNJ1O43426 1573 aa29■■■□□ 2.23
PMPCB-204ENST00000444457 GOLGA3Q08378 1498 aa28.91■■■□□ 2.22
PMPCB-204ENST00000444457 GTF3C3Q9Y5Q9 886 aa28.9■■■□□ 2.22
PMPCB-204ENST00000444457 CENPBP07199 599 aaPredicted RBP28.86■■■□□ 2.21
PMPCB-204ENST00000444457 UBTFP17480 764 aaKnown RBP28.82■■■□□ 2.2
PMPCB-204ENST00000444457 KIF21BO75037 1637 aa28.8■■■□□ 2.2
PMPCB-204ENST00000444457 CEP164Q9UPV0 1460 aa28.78■■■□□ 2.2
PMPCB-204ENST00000444457 HMGXB3Q12766 1538 aa28.76■■■□□ 2.19
PMPCB-204ENST00000444457 TOP2BQ02880 1626 aa28.71■■■□□ 2.19
PMPCB-204ENST00000444457 NCAPD3P42695 1498 aa28.71■■■□□ 2.19
PMPCB-204ENST00000444457 DIEXFQ68CQ4 756 aaKnown RBP28.7■■■□□ 2.18
PMPCB-204ENST00000444457 BIVM-ERCC5R4GMW8 1640 aa28.66■■■□□ 2.18
PMPCB-204ENST00000444457 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.64■■■□□ 2.17
PMPCB-204ENST00000444457 CCER1Q8TC90 406 aaPredicted RBP28.62■■■□□ 2.17
PMPCB-204ENST00000444457 TTBK1Q5TCY1 1321 aaPredicted RBP28.58■■■□□ 2.17
PMPCB-204ENST00000444457 RAPGEF2Q9Y4G8 1499 aa28.53■■■□□ 2.16
PMPCB-204ENST00000444457 CLIP1P30622 1438 aa28.52■■■□□ 2.16
PMPCB-204ENST00000444457 CUX1P39880 1505 aa28.42■■■□□ 2.14
PMPCB-204ENST00000444457 CFTRP13569 1480 aa28.42■■■□□ 2.14
PMPCB-204ENST00000444457 VPS8Q8N3P4 1428 aa28.41■■■□□ 2.14
PMPCB-204ENST00000444457 CC2D2AQ9P2K1 1620 aa28.37■■■□□ 2.13
PMPCB-204ENST00000444457 ERICH3Q5RHP9 1530 aa28.37■■■□□ 2.13
PMPCB-204ENST00000444457 PRDM2Q13029 1718 aa28.36■■■□□ 2.13
PMPCB-204ENST00000444457 PRXQ9BXM0 1461 aa28.33■■■□□ 2.13
PMPCB-204ENST00000444457 KIF27Q86VH2 1401 aa28.23■■■□□ 2.11
PMPCB-204ENST00000444457 ZNF316A6NFI3 1004 aaPredicted RBP28.2■■■□□ 2.1
PMPCB-204ENST00000444457 RANGAP1P46060 587 aaPredicted RBP28.18■■■□□ 2.1
PMPCB-204ENST00000444457 APLP2Q06481 763 aa28.16■■■□□ 2.1
PMPCB-204ENST00000444457 ARAP1Q96P48 1450 aa28.12■■■□□ 2.09
PMPCB-204ENST00000444457 CADPSQ9ULU8 1353 aa28.11■■■□□ 2.09
PMPCB-204ENST00000444457 YTHDC1Q96MU7 727 aaKnown RBP28.05■■■□□ 2.08
PMPCB-204ENST00000444457 DNAJC5BQ9UF47 199 aa28.05■■■□□ 2.08
PMPCB-204ENST00000444457 HNRNPUL2Q1KMD3 747 aaKnown RBP28.03■■■□□ 2.08
PMPCB-204ENST00000444457 CUX2O14529 1486 aa27.97■■■□□ 2.07
PMPCB-204ENST00000444457 FGD5Q6ZNL6 1462 aa27.94■■■□□ 2.06
PMPCB-204ENST00000444457 MIER1Q8N108 512 aa27.93■■■□□ 2.06
PMPCB-204ENST00000444457 ARHGAP35Q9NRY4 1499 aa27.9■■■□□ 2.06
PMPCB-204ENST00000444457 IGF1RP08069 1367 aa27.9■■■□□ 2.06
PMPCB-204ENST00000444457 FANCD2Q9BXW9 1451 aa27.84■■■□□ 2.05
PMPCB-204ENST00000444457 KANK4Q5T7N3 995 aaPredicted RBP27.82■■■□□ 2.04
PMPCB-204ENST00000444457 CARMIL1Q5VZK9 1371 aa27.79■■■□□ 2.04
PMPCB-204ENST00000444457 CLSPNQ9HAW4 1339 aa27.77■■■□□ 2.04
PMPCB-204ENST00000444457 DNMBPQ6XZF7 1577 aa27.75■■■□□ 2.03
PMPCB-204ENST00000444457 RRBP1Q9P2E9 1410 aaKnown RBP27.73■■■□□ 2.03
PMPCB-204ENST00000444457 TOPBP1Q92547 1522 aa27.67■■■□□ 2.02
PMPCB-204ENST00000444457 NESP48681 1621 aa27.65■■■□□ 2.02
PMPCB-204ENST00000444457 ABCA10Q8WWZ4 1543 aa27.65■■■□□ 2.02
PMPCB-204ENST00000444457 POLA1P09884 1462 aaPredicted RBP27.63■■■□□ 2.01
PMPCB-204ENST00000444457 RAD54L2Q9Y4B4 1467 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms