RNA–Protein interactions for RNA: ENST00000436177.5

VPS50-203, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-203ENST00000436177 AEBP2Q6ZN18 517 aaPredicted RBP22.45■■□□□ 1.18
VPS50-203ENST00000436177 CHIC1Q5VXU3 224 aa21.16■□□□□ 0.98
VPS50-203ENST00000436177 NISCHQ9Y2I1 1504 aa19.2■□□□□ 0.66
VPS50-203ENST00000436177 SENP3Q9H4L4 574 aaPredicted RBP19.12■□□□□ 0.65
VPS50-203ENST00000436177 PHF23Q9BUL5 403 aaPredicted RBP18.9■□□□□ 0.62
VPS50-203ENST00000436177 FOXD1Q16676 465 aa17.88■□□□□ 0.45
VPS50-203ENST00000436177 ABCC9O60706 1549 aa17.26■□□□□ 0.35
VPS50-203ENST00000436177 CCDC180Q9P1Z9 1646 aa17.21■□□□□ 0.35
VPS50-203ENST00000436177 PLPPR3Q6T4P5 718 aa16.85■□□□□ 0.29
VPS50-203ENST00000436177 MSH5O43196 834 aa16.73■□□□□ 0.27
VPS50-203ENST00000436177 PIAS4Q8N2W9 510 aaPredicted RBP16.71■□□□□ 0.27
VPS50-203ENST00000436177 PPP6R1Q9UPN7 881 aa16.65■□□□□ 0.26
VPS50-203ENST00000436177 ADRA2BP18089 450 aa16.62■□□□□ 0.25
VPS50-203ENST00000436177 POTEDQ86YR6 584 aa16.59■□□□□ 0.25
VPS50-203ENST00000436177 RB1CC1Q8TDY2 1594 aa16.43■□□□□ 0.22
VPS50-203ENST00000436177 DCAF8L2P0C7V8 631 aa16.31■□□□□ 0.2
VPS50-203ENST00000436177 NACADO15069 1562 aa16.3■□□□□ 0.2
VPS50-203ENST00000436177 DNAJC5BQ9UF47 199 aa16.08■□□□□ 0.16
VPS50-203ENST00000436177 PABPN1Q86U42 306 aaKnown RBP eCLIP16.07■□□□□ 0.16
VPS50-203ENST00000436177 MYO15BQ96JP2 1530 aa16.07■□□□□ 0.16
VPS50-203ENST00000436177 ZCCHC6Q5VYS8 1495 aaKnown RBP15.92■□□□□ 0.14
VPS50-203ENST00000436177 UNC13AQ9UPW8 1703 aa15.89■□□□□ 0.13
VPS50-203ENST00000436177 DCAF1Q9Y4B6 1507 aa15.85■□□□□ 0.13
VPS50-203ENST00000436177 BICRAQ9NZM4 1560 aa15.85■□□□□ 0.13
VPS50-203ENST00000436177 SHROOM4Q9ULL8 1493 aa15.77■□□□□ 0.11
VPS50-203ENST00000436177 SCRIBQ14160 1630 aa15.72■□□□□ 0.11
VPS50-203ENST00000436177 CECR2Q9BXF3 1484 aa15.56■□□□□ 0.08
VPS50-203ENST00000436177 CC2D2AQ9P2K1 1620 aa15.54■□□□□ 0.08
VPS50-203ENST00000436177 EIF4G1Q04637 1599 aaKnown RBP15.53■□□□□ 0.08
VPS50-203ENST00000436177 MAPK8IP2Q13387 824 aaPredicted RBP15.31■□□□□ 0.04
VPS50-203ENST00000436177 DMRT2Q9Y5R5 561 aa15.14■□□□□ 0.01
VPS50-203ENST00000436177 SCAF1Q9H7N4 1312 aaKnown RBP15.11■□□□□ 0.01
VPS50-203ENST00000436177 NCAPD3P42695 1498 aa15.03■□□□□ -0
VPS50-203ENST00000436177 SMARCA2P51531 1590 aa15□□□□□ -0.01
VPS50-203ENST00000436177 ATAD2BQ9ULI0 1458 aa15□□□□□ -0.01
VPS50-203ENST00000436177 ERCC6Q03468 1493 aa14.98□□□□□ -0.01
VPS50-203ENST00000436177 SMARCA4P51532 1647 aa14.97□□□□□ -0.01
VPS50-203ENST00000436177 HMGXB3Q12766 1538 aa14.95□□□□□ -0.02
VPS50-203ENST00000436177 BAZ1AQ9NRL2 1556 aaPredicted RBP14.94□□□□□ -0.02
VPS50-203ENST00000436177 BAZ1BQ9UIG0 1483 aaKnown RBP14.91□□□□□ -0.02
VPS50-203ENST00000436177 CUX2O14529 1486 aa14.89□□□□□ -0.03
VPS50-203ENST00000436177 DNAJC5Q9H3Z4 198 aa14.83□□□□□ -0.04
VPS50-203ENST00000436177 PEG3Q9GZU2 1588 aa14.81□□□□□ -0.04
VPS50-203ENST00000436177 NESP48681 1621 aa14.78□□□□□ -0.04
VPS50-203ENST00000436177 MROH2BQ7Z745 1585 aa14.78□□□□□ -0.04
VPS50-203ENST00000436177 PPP4R3CPQ6ZMV5 832 aa14.78□□□□□ -0.04
VPS50-203ENST00000436177 LAMC3Q9Y6N6 1575 aa14.71□□□□□ -0.05
VPS50-203ENST00000436177 PDS5BQ9NTI5 1447 aa14.68□□□□□ -0.06
VPS50-203ENST00000436177 DCAF8L1A6NGE4 600 aa14.68□□□□□ -0.06
VPS50-203ENST00000436177 THOC2Q8NI27 1593 aaKnown RBP14.62□□□□□ -0.07
VPS50-203ENST00000436177 CADPSQ9ULU8 1353 aa14.61□□□□□ -0.07
VPS50-203ENST00000436177 WIZO95785 1651 aa14.57□□□□□ -0.08
VPS50-203ENST00000436177 KIF21AQ7Z4S6 1674 aa14.55□□□□□ -0.08
VPS50-203ENST00000436177 MRC2Q9UBG0 1479 aa14.53□□□□□ -0.08
VPS50-203ENST00000436177 CACNB1Q02641 598 aaPredicted RBP14.51□□□□□ -0.09
VPS50-203ENST00000436177 HOXD11P31277 338 aaPredicted RBP14.5□□□□□ -0.09
VPS50-203ENST00000436177 CNKSR2Q8WXI2 1034 aa14.5□□□□□ -0.09
VPS50-203ENST00000436177 CEP164Q9UPV0 1460 aa14.5□□□□□ -0.09
VPS50-203ENST00000436177 RSF1Q96T23 1441 aaPredicted RBP14.49□□□□□ -0.09
VPS50-203ENST00000436177 WDR62O43379 1518 aa14.46□□□□□ -0.1
VPS50-203ENST00000436177 TOP2AP11388 1531 aaKnown RBP14.46□□□□□ -0.1
VPS50-203ENST00000436177 FANCD2Q9BXW9 1451 aa14.45□□□□□ -0.1
VPS50-203ENST00000436177 CFTRP13569 1480 aa14.43□□□□□ -0.1
VPS50-203ENST00000436177 RNF216Q9NWF9 866 aaPredicted RBP14.38□□□□□ -0.11
VPS50-203ENST00000436177 URB2Q14146 1524 aaKnown RBP14.3□□□□□ -0.12
VPS50-203ENST00000436177 CCDC88BA6NC98 1476 aa14.27□□□□□ -0.12
VPS50-203ENST00000436177 TRIM41Q8WV44 630 aa14.27□□□□□ -0.13
VPS50-203ENST00000436177 RNF39Q9H2S5 420 aa14.27□□□□□ -0.13
VPS50-203ENST00000436177 OSCARQ8IYS5 282 aa14.22□□□□□ -0.13
VPS50-203ENST00000436177 PRDM2Q13029 1718 aa14.21□□□□□ -0.14
VPS50-203ENST00000436177 IFT140Q96RY7 1462 aa14.19□□□□□ -0.14
VPS50-203ENST00000436177 ABCC8Q09428 1581 aa14.17□□□□□ -0.14
VPS50-203ENST00000436177 TOPBP1Q92547 1522 aa14.16□□□□□ -0.14
VPS50-203ENST00000436177 NCBP3Q53F19 620 aaKnown RBP14.15□□□□□ -0.14
VPS50-203ENST00000436177 ZNF608Q9ULD9 1512 aaPredicted RBP14.12□□□□□ -0.15
VPS50-203ENST00000436177 DNMBPQ6XZF7 1577 aa14.12□□□□□ -0.15
VPS50-203ENST00000436177 EIF4G3O43432 1585 aaKnown RBP14.05□□□□□ -0.16
VPS50-203ENST00000436177 C1QBPQ07021 282 aaKnown RBP14.04□□□□□ -0.16
VPS50-203ENST00000436177 POLA1P09884 1462 aaPredicted RBP14.02□□□□□ -0.16
VPS50-203ENST00000436177 AQRO60306 1485 aaKnown RBP eCLIP14.01□□□□□ -0.17
VPS50-203ENST00000436177 FBLN2P98095 1184 aa14.01□□□□□ -0.17
VPS50-203ENST00000436177 TARBP1Q13395 1621 aaKnown RBP13.98□□□□□ -0.17
VPS50-203ENST00000436177 NPM3O75607 178 aaKnown RBP13.98□□□□□ -0.17
VPS50-203ENST00000436177 SOGA1O94964 1423 aa13.98□□□□□ -0.17
VPS50-203ENST00000436177 RIMBP3CA6NJZ7 1639 aa13.97□□□□□ -0.17
VPS50-203ENST00000436177 RIMBP3BA6NNM3 1639 aa13.97□□□□□ -0.17
VPS50-203ENST00000436177 RIMBP3Q9UFD9 1639 aa13.97□□□□□ -0.17
VPS50-203ENST00000436177 ARHGEF11O15085 1522 aa13.96□□□□□ -0.17
VPS50-203ENST00000436177 RAD54L2Q9Y4B4 1467 aa13.95□□□□□ -0.18
VPS50-203ENST00000436177 SUPT5HO00267 1087 aaKnown RBP13.95□□□□□ -0.18
VPS50-203ENST00000436177 TDRD9Q8NDG6 1382 aaKnown RBP13.95□□□□□ -0.18
VPS50-203ENST00000436177 FGD5Q6ZNL6 1462 aa13.94□□□□□ -0.18
VPS50-203ENST00000436177 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.93□□□□□ -0.18
VPS50-203ENST00000436177 CHD1O14646 1710 aa13.9□□□□□ -0.18
VPS50-203ENST00000436177 WDR97A6NE52 1622 aa13.9□□□□□ -0.19
VPS50-203ENST00000436177 CUX1P39880 1505 aa13.9□□□□□ -0.19
VPS50-203ENST00000436177 SNAPC4Q5SXM2 1469 aa13.89□□□□□ -0.19
VPS50-203ENST00000436177 CYB5RLQ6IPT4 315 aa13.89□□□□□ -0.19
VPS50-203ENST00000436177 CHMP7Q8WUX9 453 aaPredicted RBP13.89□□□□□ -0.19
VPS50-203ENST00000436177 GRIN2BQ13224 1484 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms