RNA–Protein interactions for RNA: ENST00000434453.1

LMBR1-209, Transcript of limb development membrane protein 1, humanhuman

TSL 5

Gene LMBR1, Length 2,229 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-209ENST00000434453 NISCHQ9Y2I1 1504 aa52.31■■■■■ 5.96
LMBR1-209ENST00000434453 CCDC180Q9P1Z9 1646 aa44.63■■■■■ 4.73
LMBR1-209ENST00000434453 SHROOM4Q9ULL8 1493 aa44.28■■■■■ 4.68
LMBR1-209ENST00000434453 ZCCHC6Q5VYS8 1495 aaKnown RBP44.26■■■■■ 4.68
LMBR1-209ENST00000434453 SUPT5HO00267 1087 aaKnown RBP43.33■■■■■ 4.53
LMBR1-209ENST00000434453 DCAF8L2P0C7V8 631 aa43.05■■■■■ 4.48
LMBR1-209ENST00000434453 DCAF1Q9Y4B6 1507 aa43.01■■■■■ 4.48
LMBR1-209ENST00000434453 CHIC1Q5VXU3 224 aa42.22■■■■■ 4.35
LMBR1-209ENST00000434453 MYO15BQ96JP2 1530 aa42.11■■■■■ 4.33
LMBR1-209ENST00000434453 ABCC9O60706 1549 aa41.75■■■■■ 4.27
LMBR1-209ENST00000434453 SCRIBQ14160 1630 aa41.67■■■■■ 4.26
LMBR1-209ENST00000434453 RSF1Q96T23 1441 aaPredicted RBP41.32■■■■■ 4.21
LMBR1-209ENST00000434453 NACADO15069 1562 aa41.22■■■■■ 4.19
LMBR1-209ENST00000434453 RB1CC1Q8TDY2 1594 aa40.9■■■■■ 4.14
LMBR1-209ENST00000434453 LOC105371045A0A1W2PR82 267 aa40.89■■■■■ 4.14
LMBR1-209ENST00000434453 CECR2Q9BXF3 1484 aa40.77■■■■■ 4.12
LMBR1-209ENST00000434453 HRCP23327 699 aa40.69■■■■■ 4.1
LMBR1-209ENST00000434453 PCGF6Q9BYE7 350 aa40.67■■■■■ 4.1
LMBR1-209ENST00000434453 MROH2BQ7Z745 1585 aa40.65■■■■■ 4.1
LMBR1-209ENST00000434453 WIZO95785 1651 aa40.44■■■■■ 4.06
LMBR1-209ENST00000434453 TRIM41Q8WV44 630 aa40.41■■■■■ 4.06
LMBR1-209ENST00000434453 BAZ1AQ9NRL2 1556 aaPredicted RBP40.21■■■■■ 4.03
LMBR1-209ENST00000434453 UNC13AQ9UPW8 1703 aa40.08■■■■■ 4.01
LMBR1-209ENST00000434453 FAM9AQ8IZU1 332 aaPredicted RBP40■■■■□ 3.99
LMBR1-209ENST00000434453 TRIM26Q12899 539 aaPredicted RBP40■■■■□ 3.99
LMBR1-209ENST00000434453 EIF4G1Q04637 1599 aaKnown RBP39.97■■■■□ 3.99
LMBR1-209ENST00000434453 SMARCA4P51532 1647 aa39.89■■■■□ 3.98
LMBR1-209ENST00000434453 TOP2AP11388 1531 aaKnown RBP39.81■■■■□ 3.96
LMBR1-209ENST00000434453 PPARGC1BQ86YN6 1023 aaKnown RBP39.81■■■■□ 3.96
LMBR1-209ENST00000434453 SMARCA2P51531 1590 aa39.61■■■■□ 3.93
LMBR1-209ENST00000434453 CCDC88BA6NC98 1476 aa39.6■■■■□ 3.93
LMBR1-209ENST00000434453 EHMT2Q96KQ7 1210 aa39.58■■■■□ 3.93
LMBR1-209ENST00000434453 BICRAQ9NZM4 1560 aa39.52■■■■□ 3.92
LMBR1-209ENST00000434453 ABCC8Q09428 1581 aa39.44■■■■□ 3.9
LMBR1-209ENST00000434453 PABPN1Q86U42 306 aaKnown RBP eCLIP39.32■■■■□ 3.88
LMBR1-209ENST00000434453 PEG3Q9GZU2 1588 aa39.19■■■■□ 3.86
LMBR1-209ENST00000434453 ZEB1P37275 1124 aaPredicted RBP39.03■■■■□ 3.84
LMBR1-209ENST00000434453 SOGA1O94964 1423 aa39.03■■■■□ 3.84
LMBR1-209ENST00000434453 RUSC2Q8N2Y8 1516 aa38.86■■■■□ 3.81
LMBR1-209ENST00000434453 ATAD2BQ9ULI0 1458 aa38.85■■■■□ 3.81
LMBR1-209ENST00000434453 EEA1Q15075 1411 aa38.84■■■■□ 3.81
LMBR1-209ENST00000434453 WRNQ14191 1432 aaPredicted RBP eCLIP38.79■■■■□ 3.82e-6■■■■■ 59.6
LMBR1-209ENST00000434453 CEP162Q5TB80 1403 aa38.79■■■■□ 3.8
LMBR1-209ENST00000434453 TNIKQ9UKE5 1360 aa38.76■■■■□ 3.8
LMBR1-209ENST00000434453 CSRNP3Q8WYN3 585 aa38.74■■■■□ 3.79
LMBR1-209ENST00000434453 BAZ1BQ9UIG0 1483 aaKnown RBP38.69■■■■□ 3.78
LMBR1-209ENST00000434453 SYNJ1O43426 1573 aa38.67■■■■□ 3.78
LMBR1-209ENST00000434453 GOLGA3Q08378 1498 aa38.55■■■■□ 3.76
LMBR1-209ENST00000434453 UBTFP17480 764 aaKnown RBP38.47■■■■□ 3.75
LMBR1-209ENST00000434453 KIF21BO75037 1637 aa38.4■■■■□ 3.74
LMBR1-209ENST00000434453 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.38■■■■□ 3.73
LMBR1-209ENST00000434453 CEP164Q9UPV0 1460 aa38.35■■■■□ 3.73
LMBR1-209ENST00000434453 TTBK1Q5TCY1 1321 aaPredicted RBP38.3■■■■□ 3.72
LMBR1-209ENST00000434453 CCER1Q8TC90 406 aaPredicted RBP38.23■■■■□ 3.71
LMBR1-209ENST00000434453 TOP2BQ02880 1626 aa38.23■■■■□ 3.71
LMBR1-209ENST00000434453 HMGXB3Q12766 1538 aa38.15■■■■□ 3.7
LMBR1-209ENST00000434453 BIVM-ERCC5R4GMW8 1640 aa38.13■■■■□ 3.69
LMBR1-209ENST00000434453 NCAPD3P42695 1498 aa38.13■■■■□ 3.69
LMBR1-209ENST00000434453 RAPGEF2Q9Y4G8 1499 aa38.1■■■■□ 3.69
LMBR1-209ENST00000434453 CLIP1P30622 1438 aa38.07■■■■□ 3.69
LMBR1-209ENST00000434453 VPS8Q8N3P4 1428 aa37.94■■■■□ 3.66
LMBR1-209ENST00000434453 CUX1P39880 1505 aa37.86■■■■□ 3.65
LMBR1-209ENST00000434453 PRXQ9BXM0 1461 aa37.8■■■■□ 3.64
LMBR1-209ENST00000434453 ERICH3Q5RHP9 1530 aa37.79■■■■□ 3.64
LMBR1-209ENST00000434453 CFTRP13569 1480 aa37.79■■■■□ 3.64
LMBR1-209ENST00000434453 RANGAP1P46060 587 aaPredicted RBP37.64■■■■□ 3.62
LMBR1-209ENST00000434453 PRDM2Q13029 1718 aa37.62■■■■□ 3.61
LMBR1-209ENST00000434453 KIF27Q86VH2 1401 aa37.57■■■■□ 3.6
LMBR1-209ENST00000434453 ARAP1Q96P48 1450 aa37.56■■■■□ 3.6
LMBR1-209ENST00000434453 HNRNPUL2Q1KMD3 747 aaKnown RBP37.55■■■■□ 3.6
LMBR1-209ENST00000434453 APLP2Q06481 763 aa37.54■■■■□ 3.6
LMBR1-209ENST00000434453 DIEXFQ68CQ4 756 aaKnown RBP37.45■■■■□ 3.59
LMBR1-209ENST00000434453 SCAF1Q9H7N4 1312 aaKnown RBP37.39■■■■□ 3.58
LMBR1-209ENST00000434453 CADPSQ9ULU8 1353 aa37.33■■■■□ 3.57
LMBR1-209ENST00000434453 ARHGAP35Q9NRY4 1499 aa37.25■■■■□ 3.55
LMBR1-209ENST00000434453 KANK4Q5T7N3 995 aaPredicted RBP37.25■■■■□ 3.55
LMBR1-209ENST00000434453 ZNF316A6NFI3 1004 aaPredicted RBP37.24■■■■□ 3.55
LMBR1-209ENST00000434453 CUX2O14529 1486 aa37.23■■■■□ 3.55
LMBR1-209ENST00000434453 CC2D2AQ9P2K1 1620 aa37.21■■■■□ 3.55
LMBR1-209ENST00000434453 IGF1RP08069 1367 aa37.21■■■■□ 3.55
LMBR1-209ENST00000434453 FGD5Q6ZNL6 1462 aa37.16■■■■□ 3.54
LMBR1-209ENST00000434453 RRBP1Q9P2E9 1410 aaKnown RBP37.08■■■■□ 3.53
LMBR1-209ENST00000434453 ACIN1Q9UKV3 1341 aaKnown RBP37.07■■■■□ 3.53
LMBR1-209ENST00000434453 NEUROD1Q13562 356 aa37.05■■■■□ 3.52
LMBR1-209ENST00000434453 CARMIL1Q5VZK9 1371 aa37■■■■□ 3.51
LMBR1-209ENST00000434453 FANCD2Q9BXW9 1451 aa36.98■■■■□ 3.51
LMBR1-209ENST00000434453 DHX57Q6P158 1386 aaKnown RBP36.96■■■■□ 3.51
LMBR1-209ENST00000434453 CLSPNQ9HAW4 1339 aa36.89■■■■□ 3.5
LMBR1-209ENST00000434453 CCNB3Q8WWL7 1395 aa36.85■■■■□ 3.49
LMBR1-209ENST00000434453 DNMBPQ6XZF7 1577 aa36.85■■■■□ 3.49
LMBR1-209ENST00000434453 TIAM1Q13009 1591 aa36.83■■■■□ 3.49
LMBR1-209ENST00000434453 MAP3K1Q13233 1512 aa36.83■■■■□ 3.49
LMBR1-209ENST00000434453 CENPBP07199 599 aaPredicted RBP36.8■■■■□ 3.48
LMBR1-209ENST00000434453 RAD54L2Q9Y4B4 1467 aa36.77■■■■□ 3.48
LMBR1-209ENST00000434453 TOPBP1Q92547 1522 aa36.77■■■■□ 3.48
LMBR1-209ENST00000434453 ABCA10Q8WWZ4 1543 aa36.76■■■■□ 3.48
LMBR1-209ENST00000434453 NESP48681 1621 aa36.76■■■■□ 3.47
LMBR1-209ENST00000434453 POLA1P09884 1462 aaPredicted RBP36.74■■■■□ 3.47
LMBR1-209ENST00000434453 MIER1Q8N108 512 aa36.7■■■■□ 3.47
LMBR1-209ENST00000434453 LRRC9Q6ZRR7 1453 aa36.66■■■■□ 3.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms