RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 NISCHQ9Y2I1 1504 aa28.66■■■□□ 2.18
COL6A3-207ENST00000433762 CCDC180Q9P1Z9 1646 aa24.65■■□□□ 1.54
COL6A3-207ENST00000433762 ZCCHC6Q5VYS8 1495 aaKnown RBP24.29■■□□□ 1.48
COL6A3-207ENST00000433762 SHROOM4Q9ULL8 1493 aa23.85■■□□□ 1.41
COL6A3-207ENST00000433762 DCAF1Q9Y4B6 1507 aa23.8■■□□□ 1.4
COL6A3-207ENST00000433762 SUPT5HO00267 1087 aaKnown RBP23.42■■□□□ 1.34
COL6A3-207ENST00000433762 MYO15BQ96JP2 1530 aa23.18■■□□□ 1.3
COL6A3-207ENST00000433762 ABCC9O60706 1549 aa23.13■■□□□ 1.29
COL6A3-207ENST00000433762 DCAF8L2P0C7V8 631 aa23.11■■□□□ 1.29
COL6A3-207ENST00000433762 CHIC1Q5VXU3 224 aa23.01■■□□□ 1.27
COL6A3-207ENST00000433762 NACADO15069 1562 aa22.68■■□□□ 1.22
COL6A3-207ENST00000433762 SCRIBQ14160 1630 aa22.66■■□□□ 1.22
COL6A3-207ENST00000433762 RSF1Q96T23 1441 aaPredicted RBP22.56■■□□□ 1.2
COL6A3-207ENST00000433762 RB1CC1Q8TDY2 1594 aa22.48■■□□□ 1.19
COL6A3-207ENST00000433762 HRCP23327 699 aa22.34■■□□□ 1.17
COL6A3-207ENST00000433762 MROH2BQ7Z745 1585 aa22.14■■□□□ 1.13
COL6A3-207ENST00000433762 CECR2Q9BXF3 1484 aa22.12■■□□□ 1.13
COL6A3-207ENST00000433762 BAZ1AQ9NRL2 1556 aaPredicted RBP22.1■■□□□ 1.13
COL6A3-207ENST00000433762 PCGF6Q9BYE7 350 aa22.1■■□□□ 1.13
COL6A3-207ENST00000433762 LOC105371045A0A1W2PR82 267 aa22.07■■□□□ 1.12
COL6A3-207ENST00000433762 WIZO95785 1651 aa22.03■■□□□ 1.12
COL6A3-207ENST00000433762 UNC13AQ9UPW8 1703 aa22.02■■□□□ 1.12
COL6A3-207ENST00000433762 TRIM41Q8WV44 630 aa22.01■■□□□ 1.11
COL6A3-207ENST00000433762 TRIM26Q12899 539 aaPredicted RBP21.96■■□□□ 1.11
COL6A3-207ENST00000433762 EIF4G1Q04637 1599 aaKnown RBP21.95■■□□□ 1.1
COL6A3-207ENST00000433762 TOP2AP11388 1531 aaKnown RBP21.87■■□□□ 1.09
COL6A3-207ENST00000433762 SMARCA4P51532 1647 aa21.85■■□□□ 1.09
COL6A3-207ENST00000433762 BICRAQ9NZM4 1560 aa21.79■■□□□ 1.08
COL6A3-207ENST00000433762 PABPN1Q86U42 306 aaKnown RBP eCLIP21.79■■□□□ 1.08
COL6A3-207ENST00000433762 SMARCA2P51531 1590 aa21.68■■□□□ 1.06
COL6A3-207ENST00000433762 ZEB1P37275 1124 aaPredicted RBP21.65■■□□□ 1.06
COL6A3-207ENST00000433762 PEG3Q9GZU2 1588 aa21.61■■□□□ 1.05
COL6A3-207ENST00000433762 CCDC88BA6NC98 1476 aa21.6■■□□□ 1.05
COL6A3-207ENST00000433762 FAM9AQ8IZU1 332 aaPredicted RBP21.53■■□□□ 1.04
COL6A3-207ENST00000433762 PPARGC1BQ86YN6 1023 aaKnown RBP21.5■■□□□ 1.03
COL6A3-207ENST00000433762 EEA1Q15075 1411 aa21.49■■□□□ 1.03
COL6A3-207ENST00000433762 ABCC8Q09428 1581 aa21.43■■□□□ 1.02
COL6A3-207ENST00000433762 WRNQ14191 1432 aaPredicted RBP eCLIP21.41■■□□□ 1.02
COL6A3-207ENST00000433762 TNIKQ9UKE5 1360 aa21.3■■□□□ 1
COL6A3-207ENST00000433762 CEP162Q5TB80 1403 aa21.22■□□□□ 0.99
COL6A3-207ENST00000433762 ATAD2BQ9ULI0 1458 aa21.21■□□□□ 0.99
COL6A3-207ENST00000433762 SOGA1O94964 1423 aa21.2■□□□□ 0.98
COL6A3-207ENST00000433762 GOLGA3Q08378 1498 aa21.18■□□□□ 0.98
COL6A3-207ENST00000433762 KIF21BO75037 1637 aa21.17■□□□□ 0.98
COL6A3-207ENST00000433762 CSRNP3Q8WYN3 585 aa21.16■□□□□ 0.98
COL6A3-207ENST00000433762 BAZ1BQ9UIG0 1483 aaKnown RBP21.14■□□□□ 0.98
COL6A3-207ENST00000433762 EHMT2Q96KQ7 1210 aa21.1■□□□□ 0.97
COL6A3-207ENST00000433762 SYNJ1O43426 1573 aa21.1■□□□□ 0.97
COL6A3-207ENST00000433762 CEP164Q9UPV0 1460 aa21.09■□□□□ 0.97
COL6A3-207ENST00000433762 RUSC2Q8N2Y8 1516 aa21.05■□□□□ 0.96
COL6A3-207ENST00000433762 HMGXB3Q12766 1538 aa21■□□□□ 0.95
COL6A3-207ENST00000433762 TOP2BQ02880 1626 aa20.99■□□□□ 0.95
COL6A3-207ENST00000433762 BIVM-ERCC5R4GMW8 1640 aa20.98■□□□□ 0.95
COL6A3-207ENST00000433762 CC2D2AQ9P2K1 1620 aa20.91■□□□□ 0.94
COL6A3-207ENST00000433762 UBTFP17480 764 aaKnown RBP20.9■□□□□ 0.94
COL6A3-207ENST00000433762 NCAPD3P42695 1498 aa20.9■□□□□ 0.94
COL6A3-207ENST00000433762 CCER1Q8TC90 406 aaPredicted RBP20.86■□□□□ 0.93
COL6A3-207ENST00000433762 ERICH3Q5RHP9 1530 aa20.86■□□□□ 0.93
COL6A3-207ENST00000433762 CLIP1P30622 1438 aa20.83■□□□□ 0.93
COL6A3-207ENST00000433762 VPS8Q8N3P4 1428 aa20.83■□□□□ 0.92
COL6A3-207ENST00000433762 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.8■□□□□ 0.92
COL6A3-207ENST00000433762 PRDM2Q13029 1718 aa20.78■□□□□ 0.92
COL6A3-207ENST00000433762 RAPGEF2Q9Y4G8 1499 aa20.76■□□□□ 0.91
COL6A3-207ENST00000433762 PRXQ9BXM0 1461 aa20.73■□□□□ 0.91
COL6A3-207ENST00000433762 CFTRP13569 1480 aa20.69■□□□□ 0.9
COL6A3-207ENST00000433762 CUX1P39880 1505 aa20.65■□□□□ 0.9
COL6A3-207ENST00000433762 KIF27Q86VH2 1401 aa20.6■□□□□ 0.89
COL6A3-207ENST00000433762 DNAJC5BQ9UF47 199 aa20.59■□□□□ 0.89
COL6A3-207ENST00000433762 APLP2Q06481 763 aa20.56■□□□□ 0.88
COL6A3-207ENST00000433762 ARAP1Q96P48 1450 aa20.53■□□□□ 0.88
COL6A3-207ENST00000433762 TTBK1Q5TCY1 1321 aaPredicted RBP20.5■□□□□ 0.87
COL6A3-207ENST00000433762 DIEXFQ68CQ4 756 aaKnown RBP20.49■□□□□ 0.87
COL6A3-207ENST00000433762 CLSPNQ9HAW4 1339 aa20.47■□□□□ 0.87
COL6A3-207ENST00000433762 ZNF316A6NFI3 1004 aaPredicted RBP20.43■□□□□ 0.86
COL6A3-207ENST00000433762 SCAF1Q9H7N4 1312 aaKnown RBP20.41■□□□□ 0.86
COL6A3-207ENST00000433762 MAP3K1Q13233 1512 aa20.4■□□□□ 0.86
COL6A3-207ENST00000433762 RRBP1Q9P2E9 1410 aaKnown RBP20.39■□□□□ 0.86
COL6A3-207ENST00000433762 PELP1Q8IZL8 1130 aaKnown RBP20.39■□□□□ 0.85
COL6A3-207ENST00000433762 CADPSQ9ULU8 1353 aa20.38■□□□□ 0.85
COL6A3-207ENST00000433762 ACIN1Q9UKV3 1341 aaKnown RBP20.37■□□□□ 0.85
COL6A3-207ENST00000433762 CUX2O14529 1486 aa20.36■□□□□ 0.85
COL6A3-207ENST00000433762 ARHGAP35Q9NRY4 1499 aa20.35■□□□□ 0.85
COL6A3-207ENST00000433762 CENPBP07199 599 aaPredicted RBP20.35■□□□□ 0.85
COL6A3-207ENST00000433762 HNRNPUL2Q1KMD3 747 aaKnown RBP20.34■□□□□ 0.85
COL6A3-207ENST00000433762 IGF1RP08069 1367 aa20.29■□□□□ 0.84
COL6A3-207ENST00000433762 FGD5Q6ZNL6 1462 aa20.27■□□□□ 0.83
COL6A3-207ENST00000433762 NESP48681 1621 aa20.23■□□□□ 0.83
COL6A3-207ENST00000433762 DHX57Q6P158 1386 aaKnown RBP20.23■□□□□ 0.83
COL6A3-207ENST00000433762 TIAM1Q13009 1591 aa20.23■□□□□ 0.83
COL6A3-207ENST00000433762 DNMBPQ6XZF7 1577 aa20.22■□□□□ 0.83
COL6A3-207ENST00000433762 NEUROD1Q13562 356 aa20.2■□□□□ 0.82
COL6A3-207ENST00000433762 CARMIL1Q5VZK9 1371 aa20.2■□□□□ 0.82
COL6A3-207ENST00000433762 LAMC3Q9Y6N6 1575 aa20.2■□□□□ 0.82
COL6A3-207ENST00000433762 CCNB3Q8WWL7 1395 aa20.19■□□□□ 0.82
COL6A3-207ENST00000433762 CFAP43Q8NDM7 1665 aa20.18■□□□□ 0.82
COL6A3-207ENST00000433762 KANK4Q5T7N3 995 aaPredicted RBP20.18■□□□□ 0.82
COL6A3-207ENST00000433762 FANCD2Q9BXW9 1451 aa20.17■□□□□ 0.82
COL6A3-207ENST00000433762 CUL7Q14999 1698 aa20.17■□□□□ 0.82
COL6A3-207ENST00000433762 FHAD1B1AJZ9 1412 aa20.16■□□□□ 0.82
COL6A3-207ENST00000433762 ABCA10Q8WWZ4 1543 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms