RNA–Protein interactions for RNA: ENST00000433355.6

SHPRH-205, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

TSL 1 (best)

Gene SHPRH, Length 11,660 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-205ENST00000433355 NISCHQ9Y2I1 1504 aa7.59□□□□□ -1.19
SHPRH-205ENST00000433355 CCDC180Q9P1Z9 1646 aa6.92□□□□□ -1.3
SHPRH-205ENST00000433355 DCAF1Q9Y4B6 1507 aa6.61□□□□□ -1.35
SHPRH-205ENST00000433355 MYO15BQ96JP2 1530 aa6.6□□□□□ -1.35
SHPRH-205ENST00000433355 ZCCHC6Q5VYS8 1495 aaKnown RBP6.44□□□□□ -1.38
SHPRH-205ENST00000433355 SHROOM4Q9ULL8 1493 aa6.35□□□□□ -1.39
SHPRH-205ENST00000433355 NACADO15069 1562 aa6.33□□□□□ -1.4
SHPRH-205ENST00000433355 RB1CC1Q8TDY2 1594 aa6.2□□□□□ -1.42
SHPRH-205ENST00000433355 ABCC9O60706 1549 aa6.15□□□□□ -1.42
SHPRH-205ENST00000433355 BAZ1AQ9NRL2 1556 aaPredicted RBP6.07□□□□□ -1.44
SHPRH-205ENST00000433355 EEA1Q15075 1411 aa6.05□□□□□ -1.44
SHPRH-205ENST00000433355 SMARCA2P51531 1590 aa6.01□□□□□ -1.45
SHPRH-205ENST00000433355 ZEB1P37275 1124 aaPredicted RBP5.99□□□□□ -1.45
SHPRH-205ENST00000433355 BAZ1BQ9UIG0 1483 aaKnown RBP5.97□□□□□ -1.45
SHPRH-205ENST00000433355 ACIN1Q9UKV3 1341 aaKnown RBP5.97□□□□□ -1.45
SHPRH-205ENST00000433355 PEG3Q9GZU2 1588 aa5.9□□□□□ -1.47
SHPRH-205ENST00000433355 TOP2AP11388 1531 aaKnown RBP5.87□□□□□ -1.47
SHPRH-205ENST00000433355 SCRIBQ14160 1630 aa5.87□□□□□ -1.47
SHPRH-205ENST00000433355 DCAF8L2P0C7V8 631 aa5.86□□□□□ -1.47
SHPRH-205ENST00000433355 FAM9AQ8IZU1 332 aaPredicted RBP5.86□□□□□ -1.47
SHPRH-205ENST00000433355 HMGXB3Q12766 1538 aa5.86□□□□□ -1.47
SHPRH-205ENST00000433355 SMARCA4P51532 1647 aa5.84□□□□□ -1.47
SHPRH-205ENST00000433355 SUPT5HO00267 1087 aaKnown RBP5.82□□□□□ -1.48
SHPRH-205ENST00000433355 RSF1Q96T23 1441 aaPredicted RBP5.81□□□□□ -1.48
SHPRH-205ENST00000433355 PELP1Q8IZL8 1130 aaKnown RBP5.79□□□□□ -1.48
SHPRH-205ENST00000433355 APLP2Q06481 763 aa5.77□□□□□ -1.49
SHPRH-205ENST00000433355 PRDM2Q13029 1718 aa5.76□□□□□ -1.49
SHPRH-205ENST00000433355 CLSPNQ9HAW4 1339 aa5.76□□□□□ -1.49
SHPRH-205ENST00000433355 ABCC8Q09428 1581 aa5.75□□□□□ -1.49
SHPRH-205ENST00000433355 TRIM41Q8WV44 630 aa5.75□□□□□ -1.49
SHPRH-205ENST00000433355 GOLGA3Q08378 1498 aa5.73□□□□□ -1.49
SHPRH-205ENST00000433355 CEP164Q9UPV0 1460 aa5.73□□□□□ -1.49
SHPRH-205ENST00000433355 CHIC1Q5VXU3 224 aa5.73□□□□□ -1.49
SHPRH-205ENST00000433355 ERICH3Q5RHP9 1530 aa5.73□□□□□ -1.49
SHPRH-205ENST00000433355 WDR97A6NE52 1622 aa5.7□□□□□ -1.5
SHPRH-205ENST00000433355 WRNQ14191 1432 aaPredicted RBP eCLIP5.7□□□□□ -1.5
SHPRH-205ENST00000433355 MYT1Q01538 1121 aa5.7□□□□□ -1.5
SHPRH-205ENST00000433355 KIF21BO75037 1637 aa5.7□□□□□ -1.5
SHPRH-205ENST00000433355 TRIM26Q12899 539 aaPredicted RBP5.68□□□□□ -1.5
SHPRH-205ENST00000433355 NCAPD3P42695 1498 aa5.68□□□□□ -1.5
SHPRH-205ENST00000433355 UNC13AQ9UPW8 1703 aa5.67□□□□□ -1.5
SHPRH-205ENST00000433355 FHAD1B1AJZ9 1412 aa5.65□□□□□ -1.51
SHPRH-205ENST00000433355 TNIKQ9UKE5 1360 aa5.65□□□□□ -1.51
SHPRH-205ENST00000433355 KIF27Q86VH2 1401 aa5.64□□□□□ -1.51
SHPRH-205ENST00000433355 KIF21AQ7Z4S6 1674 aa5.64□□□□□ -1.51
SHPRH-205ENST00000433355 TOP2BQ02880 1626 aa5.62□□□□□ -1.51
SHPRH-205ENST00000433355 MROH2BQ7Z745 1585 aa5.62□□□□□ -1.51
SHPRH-205ENST00000433355 EFCAB5A4FU69 1503 aa5.62□□□□□ -1.51
SHPRH-205ENST00000433355 MAP3K1Q13233 1512 aa5.61□□□□□ -1.51
SHPRH-205ENST00000433355 THOC2Q8NI27 1593 aaKnown RBP5.6□□□□□ -1.51
SHPRH-205ENST00000433355 BIVM-ERCC5R4GMW8 1640 aa5.6□□□□□ -1.51
SHPRH-205ENST00000433355 CUL7Q14999 1698 aa5.6□□□□□ -1.51
SHPRH-205ENST00000433355 EIF4G1Q04637 1599 aaKnown RBP5.6□□□□□ -1.51
SHPRH-205ENST00000433355 CENPBP07199 599 aaPredicted RBP5.59□□□□□ -1.51
SHPRH-205ENST00000433355 ATAD2BQ9ULI0 1458 aa5.59□□□□□ -1.51
SHPRH-205ENST00000433355 CC2D2AQ9P2K1 1620 aa5.59□□□□□ -1.52
SHPRH-205ENST00000433355 CEP162Q5TB80 1403 aa5.58□□□□□ -1.52
SHPRH-205ENST00000433355 CLIP1P30622 1438 aa5.57□□□□□ -1.52
SHPRH-205ENST00000433355 VPS8Q8N3P4 1428 aa5.57□□□□□ -1.52
SHPRH-205ENST00000433355 CFTRP13569 1480 aa5.57□□□□□ -1.52
SHPRH-205ENST00000433355 BICRAQ9NZM4 1560 aa5.56□□□□□ -1.52
SHPRH-205ENST00000433355 TIMELESSQ9UNS1 1208 aa5.56□□□□□ -1.52
SHPRH-205ENST00000433355 HRCP23327 699 aa5.56□□□□□ -1.52
SHPRH-205ENST00000433355 WIZO95785 1651 aa5.56□□□□□ -1.52
SHPRH-205ENST00000433355 FMN1Q68DA7 1419 aa5.56□□□□□ -1.52
SHPRH-205ENST00000433355 LAMC3Q9Y6N6 1575 aa5.55□□□□□ -1.52
SHPRH-205ENST00000433355 PDS5BQ9NTI5 1447 aa5.55□□□□□ -1.52
SHPRH-205ENST00000433355 CUX1P39880 1505 aa5.54□□□□□ -1.52
SHPRH-205ENST00000433355 CCDC88BA6NC98 1476 aa5.54□□□□□ -1.52
SHPRH-205ENST00000433355 ERCC6Q03468 1493 aa5.54□□□□□ -1.52
SHPRH-205ENST00000433355 CSRNP3Q8WYN3 585 aa5.53□□□□□ -1.52
SHPRH-205ENST00000433355 CECR2Q9BXF3 1484 aa5.53□□□□□ -1.52
SHPRH-205ENST00000433355 AQRO60306 1485 aaKnown RBP eCLIP5.52□□□□□ -1.535e-10■■■■■ 39.2
SHPRH-205ENST00000433355 DNMBPQ6XZF7 1577 aa5.52□□□□□ -1.53
SHPRH-205ENST00000433355 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.5□□□□□ -1.53
SHPRH-205ENST00000433355 CADPSQ9ULU8 1353 aa5.5□□□□□ -1.53
SHPRH-205ENST00000433355 CCDC18Q5T9S5 1454 aa5.49□□□□□ -1.53
SHPRH-205ENST00000433355 CDK11AQ9UQ88 783 aaPredicted RBP5.49□□□□□ -1.53
SHPRH-205ENST00000433355 UBTFP17480 764 aaKnown RBP5.48□□□□□ -1.53
SHPRH-205ENST00000433355 FYCO1Q9BQS8 1478 aa5.48□□□□□ -1.53
SHPRH-205ENST00000433355 AKNAQ7Z591 1439 aa5.47□□□□□ -1.53
SHPRH-205ENST00000433355 ABCA10Q8WWZ4 1543 aa5.46□□□□□ -1.54
SHPRH-205ENST00000433355 RAPGEF2Q9Y4G8 1499 aa5.45□□□□□ -1.54
SHPRH-205ENST00000433355 SLC24A1O60721 1099 aa5.45□□□□□ -1.54
SHPRH-205ENST00000433355 CCER1Q8TC90 406 aaPredicted RBP5.44□□□□□ -1.54
SHPRH-205ENST00000433355 ARID4BQ4LE39 1312 aaPredicted RBP5.44□□□□□ -1.54
SHPRH-205ENST00000433355 PRXQ9BXM0 1461 aa5.44□□□□□ -1.54
SHPRH-205ENST00000433355 HECW1Q76N89 1606 aa5.42□□□□□ -1.54
SHPRH-205ENST00000433355 PCGF6Q9BYE7 350 aa5.42□□□□□ -1.54
SHPRH-205ENST00000433355 CFAP43Q8NDM7 1665 aa5.41□□□□□ -1.54
SHPRH-205ENST00000433355 CTTNBP2Q8WZ74 1663 aa5.41□□□□□ -1.54
SHPRH-205ENST00000433355 SCAF1Q9H7N4 1312 aaKnown RBP5.41□□□□□ -1.54
SHPRH-205ENST00000433355 EHBP1L1Q8N3D4 1523 aa5.4□□□□□ -1.55
SHPRH-205ENST00000433355 SYNJ1O43426 1573 aa5.4□□□□□ -1.55
SHPRH-205ENST00000433355 ARHGAP35Q9NRY4 1499 aa5.39□□□□□ -1.55
SHPRH-205ENST00000433355 MAGI1Q96QZ7 1491 aaPredicted RBP5.39□□□□□ -1.55
SHPRH-205ENST00000433355 CUX2O14529 1486 aa5.38□□□□□ -1.55
SHPRH-205ENST00000433355 IFT140Q96RY7 1462 aa5.38□□□□□ -1.55
SHPRH-205ENST00000433355 CASKIN1Q8WXD9 1431 aa5.38□□□□□ -1.55
SHPRH-205ENST00000433355 SUPT6HQ7KZ85 1726 aaKnown RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms