RNA–Protein interactions for RNA: ENST00000429662.6

GABPB1-205, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,392 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-205ENST00000429662 AEBP2Q6ZN18 517 aaPredicted RBP23.37■■□□□ 1.33
GABPB1-205ENST00000429662 CHIC1Q5VXU3 224 aa22.01■■□□□ 1.11
GABPB1-205ENST00000429662 SENP3Q9H4L4 574 aaPredicted RBP19.87■□□□□ 0.77
GABPB1-205ENST00000429662 PHF23Q9BUL5 403 aaPredicted RBP19.62■□□□□ 0.73
GABPB1-205ENST00000429662 NISCHQ9Y2I1 1504 aa19■□□□□ 0.63
GABPB1-205ENST00000429662 FOXD1Q16676 465 aa18.59■□□□□ 0.57
GABPB1-205ENST00000429662 ABCC9O60706 1549 aa17.85■□□□□ 0.45
GABPB1-205ENST00000429662 PLPPR3Q6T4P5 718 aa17.49■□□□□ 0.39
GABPB1-205ENST00000429662 DNAJC5BQ9UF47 199 aa17.4■□□□□ 0.38
GABPB1-205ENST00000429662 CCDC180Q9P1Z9 1646 aa17.39■□□□□ 0.37
GABPB1-205ENST00000429662 MSH5O43196 834 aa17.39■□□□□ 0.37
GABPB1-205ENST00000429662 PIAS4Q8N2W9 510 aaPredicted RBP17.3■□□□□ 0.36
GABPB1-205ENST00000429662 PPP6R1Q9UPN7 881 aa17.3■□□□□ 0.36
GABPB1-205ENST00000429662 POTEDQ86YR6 584 aa17.27■□□□□ 0.35
GABPB1-205ENST00000429662 ADRA2BP18089 450 aa17.21■□□□□ 0.35
GABPB1-205ENST00000429662 RB1CC1Q8TDY2 1594 aa16.74■□□□□ 0.27
GABPB1-205ENST00000429662 UNC13AQ9UPW8 1703 aa16.59■□□□□ 0.25
GABPB1-205ENST00000429662 NACADO15069 1562 aa16.5■□□□□ 0.23
GABPB1-205ENST00000429662 BICRAQ9NZM4 1560 aa16.48■□□□□ 0.23
GABPB1-205ENST00000429662 PABPN1Q86U42 306 aaKnown RBP eCLIP16.44■□□□□ 0.22
GABPB1-205ENST00000429662 DNAJC5Q9H3Z4 198 aa16.31■□□□□ 0.2
GABPB1-205ENST00000429662 CC2D2AQ9P2K1 1620 aa16.19■□□□□ 0.18
GABPB1-205ENST00000429662 CECR2Q9BXF3 1484 aa16.14■□□□□ 0.17
GABPB1-205ENST00000429662 MYO15BQ96JP2 1530 aa16.13■□□□□ 0.17
GABPB1-205ENST00000429662 SHROOM4Q9ULL8 1493 aa16.05■□□□□ 0.16
GABPB1-205ENST00000429662 EIF4G1Q04637 1599 aaKnown RBP16■□□□□ 0.15
GABPB1-205ENST00000429662 DCAF8L2P0C7V8 631 aa15.92■□□□□ 0.14
GABPB1-205ENST00000429662 MAPK8IP2Q13387 824 aaPredicted RBP15.87■□□□□ 0.13
GABPB1-205ENST00000429662 DMRT2Q9Y5R5 561 aa15.76■□□□□ 0.11
GABPB1-205ENST00000429662 SCRIBQ14160 1630 aa15.73■□□□□ 0.11
GABPB1-205ENST00000429662 DCAF1Q9Y4B6 1507 aa15.7■□□□□ 0.1
GABPB1-205ENST00000429662 ZCCHC6Q5VYS8 1495 aaKnown RBP15.67■□□□□ 0.1
GABPB1-205ENST00000429662 CUX2O14529 1486 aa15.66■□□□□ 0.1
GABPB1-205ENST00000429662 SCAF1Q9H7N4 1312 aaKnown RBP15.66■□□□□ 0.1
GABPB1-205ENST00000429662 ERCC6Q03468 1493 aa15.34■□□□□ 0.05
GABPB1-205ENST00000429662 PPP4R3CPQ6ZMV5 832 aa15.34■□□□□ 0.05
GABPB1-205ENST00000429662 THOC2Q8NI27 1593 aaKnown RBP15.31■□□□□ 0.04
GABPB1-205ENST00000429662 NCAPD3P42695 1498 aa15.25■□□□□ 0.03
GABPB1-205ENST00000429662 NESP48681 1621 aa15.24■□□□□ 0.03
GABPB1-205ENST00000429662 TRIM41Q8WV44 630 aa15.17■□□□□ 0.02
GABPB1-205ENST00000429662 HOXD11P31277 338 aaPredicted RBP15.13■□□□□ 0.01
GABPB1-205ENST00000429662 HMGXB3Q12766 1538 aa15.13■□□□□ 0.01
GABPB1-205ENST00000429662 ATAD2BQ9ULI0 1458 aa15.12■□□□□ 0.01
GABPB1-205ENST00000429662 DCAF8L1A6NGE4 600 aa15.09■□□□□ 0.01
GABPB1-205ENST00000429662 KIF21AQ7Z4S6 1674 aa15.08■□□□□ 0.01
GABPB1-205ENST00000429662 CNKSR2Q8WXI2 1034 aa15.06■□□□□ 0
GABPB1-205ENST00000429662 SMARCA2P51531 1590 aa15.02■□□□□ -0
GABPB1-205ENST00000429662 CACNB1Q02641 598 aaPredicted RBP15.01□□□□□ -0.01
GABPB1-205ENST00000429662 LAMC3Q9Y6N6 1575 aa15□□□□□ -0.01
GABPB1-205ENST00000429662 SMARCA4P51532 1647 aa14.99□□□□□ -0.01
GABPB1-205ENST00000429662 RNF216Q9NWF9 866 aaPredicted RBP14.96□□□□□ -0.02
GABPB1-205ENST00000429662 BAZ1AQ9NRL2 1556 aaPredicted RBP14.93□□□□□ -0.02
GABPB1-205ENST00000429662 PEG3Q9GZU2 1588 aa14.91□□□□□ -0.02
GABPB1-205ENST00000429662 WDR62O43379 1518 aa14.89□□□□□ -0.03
GABPB1-205ENST00000429662 RNF39Q9H2S5 420 aa14.86□□□□□ -0.03
GABPB1-205ENST00000429662 BAZ1BQ9UIG0 1483 aaKnown RBP14.86□□□□□ -0.03
GABPB1-205ENST00000429662 MRC2Q9UBG0 1479 aa14.8□□□□□ -0.04
GABPB1-205ENST00000429662 PDS5BQ9NTI5 1447 aa14.8□□□□□ -0.04
GABPB1-205ENST00000429662 RIMBP3CA6NJZ7 1639 aa14.79□□□□□ -0.04
GABPB1-205ENST00000429662 RIMBP3BA6NNM3 1639 aa14.79□□□□□ -0.04
GABPB1-205ENST00000429662 RIMBP3Q9UFD9 1639 aa14.79□□□□□ -0.04
GABPB1-205ENST00000429662 SUPT5HO00267 1087 aaKnown RBP14.73□□□□□ -0.05
GABPB1-205ENST00000429662 CADPSQ9ULU8 1353 aa14.68□□□□□ -0.06
GABPB1-205ENST00000429662 OSCARQ8IYS5 282 aa14.67□□□□□ -0.06
GABPB1-205ENST00000429662 MROH2BQ7Z745 1585 aa14.67□□□□□ -0.06
GABPB1-205ENST00000429662 ARHGEF11O15085 1522 aa14.64□□□□□ -0.07
GABPB1-205ENST00000429662 NCBP3Q53F19 620 aaKnown RBP14.64□□□□□ -0.07
GABPB1-205ENST00000429662 C1QBPQ07021 282 aaKnown RBP14.6□□□□□ -0.07
GABPB1-205ENST00000429662 CEP164Q9UPV0 1460 aa14.59□□□□□ -0.07
GABPB1-205ENST00000429662 URB2Q14146 1524 aaKnown RBP14.56□□□□□ -0.08
GABPB1-205ENST00000429662 FANCD2Q9BXW9 1451 aa14.54□□□□□ -0.08
GABPB1-205ENST00000429662 NPM3O75607 178 aaKnown RBP14.5□□□□□ -0.09
GABPB1-205ENST00000429662 ARAP1Q96P48 1450 aa14.49□□□□□ -0.09
GABPB1-205ENST00000429662 WIZO95785 1651 aa14.47□□□□□ -0.09
GABPB1-205ENST00000429662 ZNF608Q9ULD9 1512 aaPredicted RBP14.47□□□□□ -0.09
GABPB1-205ENST00000429662 CFTRP13569 1480 aa14.46□□□□□ -0.09
GABPB1-205ENST00000429662 CHD1O14646 1710 aa14.41□□□□□ -0.1
GABPB1-205ENST00000429662 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.38□□□□□ -0.11
GABPB1-205ENST00000429662 EIF4G3O43432 1585 aaKnown RBP14.37□□□□□ -0.11
GABPB1-205ENST00000429662 CYB5RLQ6IPT4 315 aa14.37□□□□□ -0.11
GABPB1-205ENST00000429662 PRDM2Q13029 1718 aa14.37□□□□□ -0.11
GABPB1-205ENST00000429662 IFT140Q96RY7 1462 aa14.32□□□□□ -0.12
GABPB1-205ENST00000429662 RSF1Q96T23 1441 aaPredicted RBP14.3□□□□□ -0.12
GABPB1-205ENST00000429662 TRHP20396 242 aaPredicted RBP14.3□□□□□ -0.12
GABPB1-205ENST00000429662 TARBP1Q13395 1621 aaKnown RBP14.26□□□□□ -0.13
GABPB1-205ENST00000429662 CLASP1Q7Z460 1538 aa14.24□□□□□ -0.13
GABPB1-205ENST00000429662 TOPBP1Q92547 1522 aa14.24□□□□□ -0.13
GABPB1-205ENST00000429662 TOP2AP11388 1531 aaKnown RBP14.2□□□□□ -0.14
GABPB1-205ENST00000429662 AQRO60306 1485 aaKnown RBP eCLIP14.17□□□□□ -0.14
GABPB1-205ENST00000429662 HRCP23327 699 aa14.14□□□□□ -0.15
GABPB1-205ENST00000429662 DNMBPQ6XZF7 1577 aa14.13□□□□□ -0.15
GABPB1-205ENST00000429662 KCNA4P22459 653 aa14.12□□□□□ -0.15
GABPB1-205ENST00000429662 U3KPZ7 1027 aaPredicted RBP14.11□□□□□ -0.15
GABPB1-205ENST00000429662 POLA1P09884 1462 aaPredicted RBP14.07□□□□□ -0.16
GABPB1-205ENST00000429662 ABCC8Q09428 1581 aa14.05□□□□□ -0.16
GABPB1-205ENST00000429662 KIF13AQ9H1H9 1805 aa14.03□□□□□ -0.16
GABPB1-205ENST00000429662 SNAPC4Q5SXM2 1469 aa14.03□□□□□ -0.16
GABPB1-205ENST00000429662 SYNJ1O43426 1573 aa14.02□□□□□ -0.16
GABPB1-205ENST00000429662 CCDC88BA6NC98 1476 aa14.02□□□□□ -0.17
GABPB1-205ENST00000429662 GAPVD1Q14C86 1478 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms